| 86 |
0.002341 |
0.09591 |
b0144 |
gluQ |
-7.21 |
0.411815 |
221 -- 264 |
26 -- 65 |
glutamyl-Q tRNA(Asp) synthetase |
|
_____________220__________________________________________265\n_____________|____________________________________________|\n5'-AGA...UUUUU__________AU__C__ACAC_______AUU__C___UU_____CCUCU...UGA-3'\n______________GUUCAAAGAG__GA_AG____ACAGUAU___GG_CGC__CGCCC\n______________:||||||:|:__||_||____|||:|||___:|_|||__|||||\n______________UAAGUUUUUU__CU_UC____UGUUAUA___UC_GCG__GCGGG\n3'-UUU...GUCAU__________C______AUUC_______CC_______UU_____UAGCG...ACG-5'\n_____________|____________________________________________|\n_____________66___________________________________________25\n |
242 -- 248 |
40 -- 46 |
-28.4973 kcal/mol |
7.75098 kcal/mol |
13.5387 kcal/mol |
220 265@LB@ | |@LB@5'-AGA...UUUUU AU C ACAC AUU C UU CCUCU...UGA-3'@LB@ GUUCAAAGAG GA AG ACAGUAU GG CGC CGCCC@LB@ :||||||:|: || || |||:||| :| ||| |||||@LB@ UAAGUUUUUU CU UC UGUUAUA UC GCG GCGGG@LB@3'-UUU...GUCAU C AUUC CC UU UAGCG...ACG-5'@LB@ | |@LB@ 66 25@LB@@LB@@LB@Energy -7.21 kcal/mol@LB@Hybridization Energy -28.4973 kcal/mol@LB@Unfolding Energy - mRNA 7.75098 kcal/mol@LB@Unfolding Energy - sRNA 13.5387 kcal/mol@LB@@LB@Position - mRNA 221 -- 264@LB@Position - sRNA 26 -- 65@LB@Position Seed - mRNA 242 -- 248@LB@Position Seed - sRNA 40 -- 46@LB@ |
| 8 |
8.903e-06 |
0.003921 |
b1654 |
grxD |
-12.06 |
0.033180 |
187 -- 203 |
41 -- 57 |
glutaredoxin-4 |
|
_____________186_____________________204\n_____________|_______________________|\n5'-AAA...AGUUU_______C_______________ACCAC...CUG-3'\n______________GAGGAAG_AAGACAAU___GAGC\n______________:||||||_||||||||___||||\n______________UUCCUUC_UUCUGUUA___CUCG\n3'-UUU...GUUUU_______A________UAC____CGUUG...ACG-5'\n_____________|_______________________|\n_____________58______________________40\n |
196 -- 202 |
42 -- 48 |
-22.6133 kcal/mol |
5.89741 kcal/mol |
4.1846 kcal/mol |
186 204@LB@ | |@LB@5'-AAA...AGUUU C ACCAC...CUG-3'@LB@ GAGGAAG AAGACAAU GAGC@LB@ :|||||| |||||||| ||||@LB@ UUCCUUC UUCUGUUA CUCG@LB@3'-UUU...GUUUU A UAC CGUUG...ACG-5'@LB@ | |@LB@ 58 40@LB@@LB@@LB@Energy -12.06 kcal/mol@LB@Hybridization Energy -22.6133 kcal/mol@LB@Unfolding Energy - mRNA 5.89741 kcal/mol@LB@Unfolding Energy - sRNA 4.1846 kcal/mol@LB@@LB@Position - mRNA 187 -- 203@LB@Position - sRNA 41 -- 57@LB@Position Seed - mRNA 196 -- 202@LB@Position Seed - sRNA 42 -- 48@LB@ |
| 51 |
0.0005809 |
0.04013 |
b2507 |
guaA |
-13.60 |
0.012166 |
41 -- 74 |
55 -- 93 |
GMP synthetase (glutamine aminotransferase) |
|
_____________40______________________________________75\n_____________|_______________________________________|\n5'-GGC...GGAGU_______U___________G______GC___________CCACG...ACU-3'\n______________UUGUACG_AUCA_____GC_GUGCGG__AUUCAGGAAAG\n______________|:|||||_||||_____||_:|||:|__|||||::||||\n______________AGCAUGC_UAGU_____CG_UACGUC__UAAGUUUUUUC\n3'-UUU...GCCGC_______U____UAACA__A______AU___________CUUCA...ACG-5'\n_____________|_______________________________________|\n_____________94______________________________________54\n |
41 -- 47 |
87 -- 93 |
-31.8361 kcal/mol |
13.3993 kcal/mol |
4.84189 kcal/mol |
40 75@LB@ | |@LB@5'-GGC...GGAGU U G GC CCACG...ACU-3'@LB@ UUGUACG AUCA GC GUGCGG AUUCAGGAAAG@LB@ |:||||| |||| || :|||:| |||||::||||@LB@ AGCAUGC UAGU CG UACGUC UAAGUUUUUUC@LB@3'-UUU...GCCGC U UAACA A AU CUUCA...ACG-5'@LB@ | |@LB@ 94 54@LB@@LB@@LB@Energy -13.60 kcal/mol@LB@Hybridization Energy -31.8361 kcal/mol@LB@Unfolding Energy - mRNA 13.3993 kcal/mol@LB@Unfolding Energy - sRNA 4.84189 kcal/mol@LB@@LB@Position - mRNA 41 -- 74@LB@Position - sRNA 55 -- 93@LB@Position Seed - mRNA 41 -- 47@LB@Position Seed - sRNA 87 -- 93@LB@ |
| 188 |
0.008258 |
0.1545 |
b3803 |
hemX |
-8.31 |
0.258101 |
280 -- 297 |
46 -- 62 |
putative uroporphyrinogen III methyltransferase |
|
_____________279________________298\n_____________|__________________|\n5'-AAA...CGCAA_______AAA________ACA-3'\n______________CAGAAAA___GAGUAAGA\n______________||:||||___:|||||||\n______________GUUUUUU___UUCAUUCU\n3'-UUU...AUUAA_______CC_________GUUAU...ACG-5'\n_____________|__________________|\n_____________63_________________45\n |
291 -- 297 |
46 -- 52 |
-11.8819 kcal/mol |
0.215347 kcal/mol |
3.36135 kcal/mol |
279 298@LB@ | |@LB@5'-AAA...CGCAA AAA ACA-3'@LB@ CAGAAAA GAGUAAGA@LB@ ||:|||| :|||||||@LB@ GUUUUUU UUCAUUCU@LB@3'-UUU...AUUAA CC GUUAU...ACG-5'@LB@ | |@LB@ 63 45@LB@@LB@@LB@Energy -8.31 kcal/mol@LB@Hybridization Energy -11.8819 kcal/mol@LB@Unfolding Energy - mRNA 0.215347 kcal/mol@LB@Unfolding Energy - sRNA 3.36135 kcal/mol@LB@@LB@Position - mRNA 280 -- 297@LB@Position - sRNA 46 -- 62@LB@Position Seed - mRNA 291 -- 297@LB@Position Seed - sRNA 46 -- 52@LB@ |
| 196 |
0.008885 |
0.1548 |
b3052 |
hldE |
-13.36 |
0.014255 |
113 -- 160 |
38 -- 93 |
heptose 7-phosphate kinase and heptose 1-phosphate adenyltransferase |
|
_____________112______________________________________________________161\n_____________|________________________________________________________|\n5'-GCG...UGAAC_G________________________A___GGCUGGU______AAU__________UAUUA...CGC-3'\n______________U_GUGCGGG_CAA____GCUG_GCAG_AGU________GGAAG___GA_AGUAUGG\n______________|_||:||::_|||____|||:_||||_|:|________|||||___||_|:|||||\n______________A_CAUGCUU_GUU____CGAU_CGUC_UUA________CCUUC___CU_UUAUACC\n3'-UUU...GCCGC_G_______A___AACA____A____A___AGUUUUUU_____AUU__G_______UCGCG...ACG-5'\n_____________|________________________________________________________|\n_____________94_______________________________________________________37\n |
154 -- 160 |
38 -- 44 |
-32.7339 kcal/mol |
11.626 kcal/mol |
7.73696 kcal/mol |
112 161@LB@ | |@LB@5'-GCG...UGAAC G A GGCUGGU AAU UAUUA...CGC-3'@LB@ U GUGCGGG CAA GCUG GCAG AGU GGAAG GA AGUAUGG@LB@ | ||:||:: ||| |||: |||| |:| ||||| || |:|||||@LB@ A CAUGCUU GUU CGAU CGUC UUA CCUUC CU UUAUACC@LB@3'-UUU...GCCGC G A AACA A A AGUUUUUU AUU G UCGCG...ACG-5'@LB@ | |@LB@ 94 37@LB@@LB@@LB@Energy -13.36 kcal/mol@LB@Hybridization Energy -32.7339 kcal/mol@LB@Unfolding Energy - mRNA 11.626 kcal/mol@LB@Unfolding Energy - sRNA 7.73696 kcal/mol@LB@@LB@Position - mRNA 113 -- 160@LB@Position - sRNA 38 -- 93@LB@Position Seed - mRNA 154 -- 160@LB@Position Seed - sRNA 38 -- 44@LB@ |
| 15 |
2.607e-05 |
0.006123 |
b2552 |
hmp |
-15.14 |
0.004063 |
170 -- 224 |
20 -- 85 |
fused nitric oxide dioxygenase/dihydropteridine reductase 2 |
|
_____________169___________________________________________________________________225\n_____________|_____________________________________________________________________|\n5'-AUU...GAUAC_______AAG_______________________________C_____CUU______UCAAA________ACAGU...UUA-3'\n______________AUCAAUU_____AUGCA_______AAAAAAGGA____AGAC_AUAUG___GA_CGC_____CCAUCGCU\n______________|||||||_____|||||_______|||||||||____||||_|||||___||_|||_____||||||||\n______________UAGUUAA_____UACGU_______UUUUUUCCU____UCUG_UAUAC___CU_GCG_____GGUAGCGA\n3'-UUU...AUGCU_______CACGA_____CAUUAAG_________UCAU____U__________C___UUGCG________ACUGC...ACG-5'\n_____________|_____________________________________________________________________|\n_____________86____________________________________________________________________19\n |
218 -- 224 |
20 -- 26 |
-42.0201 kcal/mol |
9.32625 kcal/mol |
17.5545 kcal/mol |
169 225@LB@ | |@LB@5'-AUU...GAUAC AAG C CUU UCAAA ACAGU...UUA-3'@LB@ AUCAAUU AUGCA AAAAAAGGA AGAC AUAUG GA CGC CCAUCGCU@LB@ ||||||| ||||| ||||||||| |||| ||||| || ||| ||||||||@LB@ UAGUUAA UACGU UUUUUUCCU UCUG UAUAC CU GCG GGUAGCGA@LB@3'-UUU...AUGCU CACGA CAUUAAG UCAU U C UUGCG ACUGC...ACG-5'@LB@ | |@LB@ 86 19@LB@@LB@@LB@Energy -15.14 kcal/mol@LB@Hybridization Energy -42.0201 kcal/mol@LB@Unfolding Energy - mRNA 9.32625 kcal/mol@LB@Unfolding Energy - sRNA 17.5545 kcal/mol@LB@@LB@Position - mRNA 170 -- 224@LB@Position - sRNA 20 -- 85@LB@Position Seed - mRNA 218 -- 224@LB@Position Seed - sRNA 20 -- 26@LB@ |
| 191 |
0.008524 |
0.1548 |
b3203 |
hpf |
-8.75 |
0.209451 |
199 -- 206 |
68 -- 75 |
ribosome hibernation promoting factor HPF; stabilizes 100S dimers |
|
_____________198______207\n_____________|________|\n5'-GAU...AGACA________CUCAA...GAA-3'\n______________CUAUGCAG\n______________||||||||\n______________GAUACGUC\n3'-UUU...AACAC________AUUAA...ACG-5'\n_____________|________|\n_____________76_______67\n |
200 -- 206 |
68 -- 74 |
-11.4515 kcal/mol |
0.966058 kcal/mol |
1.73443 kcal/mol |
198 207@LB@ | |@LB@5'-GAU...AGACA CUCAA...GAA-3'@LB@ CUAUGCAG@LB@ ||||||||@LB@ GAUACGUC@LB@3'-UUU...AACAC AUUAA...ACG-5'@LB@ | |@LB@ 76 67@LB@@LB@@LB@Energy -8.75 kcal/mol@LB@Hybridization Energy -11.4515 kcal/mol@LB@Unfolding Energy - mRNA 0.966058 kcal/mol@LB@Unfolding Energy - sRNA 1.73443 kcal/mol@LB@@LB@Position - mRNA 199 -- 206@LB@Position - sRNA 68 -- 75@LB@Position Seed - mRNA 200 -- 206@LB@Position Seed - sRNA 68 -- 74@LB@ |
| 92 |
0.002723 |
0.1042 |
b1413 |
hrpA |
-14.20 |
0.008055 |
24 -- 69 |
1 -- 41 |
putative ATP-dependent helicase |
|
_____________23_______________________________________________70\n_____________|________________________________________________|\n5'-GGU...UUUGA________AU____________UGU____ACUU______CAAU_____CACAG...GCG-3'\n______________AUGG_GCG__GC_CCCGUUGCU___UGAC____UAUUCA____CCUGC\n______________||||_|||__:|_|||:|:|||___||||____:|||||____|||||\n______________UACC_CGC__UG_GGGUAGCGA___ACUG____GUAAGU____GGACG\n3'-UUU...UGUUA____U___GU__C________________CAAC_______________-5'\n_____________|_______________________________________________|\n_____________42______________________________________________1\n |
37 -- 43 |
20 -- 26 |
-41.3168 kcal/mol |
11.8333 kcal/mol |
15.2922 kcal/mol |
23 70@LB@ | |@LB@5'-GGU...UUUGA AU UGU ACUU CAAU CACAG...GCG-3'@LB@ AUGG GCG GC CCCGUUGCU UGAC UAUUCA CCUGC@LB@ |||| ||| :| |||:|:||| |||| :||||| |||||@LB@ UACC CGC UG GGGUAGCGA ACUG GUAAGU GGACG@LB@3'-UUU...UGUUA U GU C CAAC -5'@LB@ | |@LB@ 42 1@LB@@LB@@LB@Energy -14.20 kcal/mol@LB@Hybridization Energy -41.3168 kcal/mol@LB@Unfolding Energy - mRNA 11.8333 kcal/mol@LB@Unfolding Energy - sRNA 15.2922 kcal/mol@LB@@LB@Position - mRNA 24 -- 69@LB@Position - sRNA 1 -- 41@LB@Position Seed - mRNA 37 -- 43@LB@Position Seed - sRNA 20 -- 26@LB@ |
| 133 |
0.004969 |
0.1313 |
b0148 |
hrpB |
-12.31 |
0.028366 |
190 -- 234 |
2 -- 40 |
putative ATP-dependent helicase |
|
_____________189___________________________________________235\n_____________|_____________________________________________|\n5'-GCA...CCCUC________UU___G________GCC______UGCCGUC_______AAUUA...AAU-3'\n______________UGGAGCGU__UGU_UCGUCGUU___CGUUGC_______UUACCUG\n______________|||||||:__:|:_:|:|||:|___||||||_______|:|||||\n______________ACCUCGCG__GCG_GGUAGCGA___GCAACG_______AGUGGAC\n3'-UUU...GUUAU________UU____________ACU______UA____________G-5'\n_____________|_____________________________________________|\n_____________41____________________________________________1\n |
228 -- 234 |
2 -- 8 |
-41.1674 kcal/mol |
13.5737 kcal/mol |
15.2914 kcal/mol |
189 235@LB@ | |@LB@5'-GCA...CCCUC UU G GCC UGCCGUC AAUUA...AAU-3'@LB@ UGGAGCGU UGU UCGUCGUU CGUUGC UUACCUG@LB@ |||||||: :|: :|:|||:| |||||| |:|||||@LB@ ACCUCGCG GCG GGUAGCGA GCAACG AGUGGAC@LB@3'-UUU...GUUAU UU ACU UA G-5'@LB@ | |@LB@ 41 1@LB@@LB@@LB@Energy -12.31 kcal/mol@LB@Hybridization Energy -41.1674 kcal/mol@LB@Unfolding Energy - mRNA 13.5737 kcal/mol@LB@Unfolding Energy - sRNA 15.2914 kcal/mol@LB@@LB@Position - mRNA 190 -- 234@LB@Position - sRNA 2 -- 40@LB@Position Seed - mRNA 228 -- 234@LB@Position Seed - sRNA 2 -- 8@LB@ |
| 166 |
0.006486 |
0.1377 |
b0440 |
hupB |
-11.63 |
0.043010 |
149 -- 200 |
46 -- 93 |
HU DNA-binding transcriptional regulator beta subunit |
|
_____________148______________________________________________________201\n_____________|________________________________________________________|\n5'-CGC...CGCGU______CUUGAAG__U__________GAUAUA______AU__________AG____GUGAA...CUG-3'\n______________UCGUAC_______GA_UCAA__GUGC________AAUU__AAAGAGGAAG__AAGA\n______________||||||_______||_||||__||||________||||__|||:||||||__||||\n______________AGCAUG_______CU_AGUU__CACG________UUAA__UUUUUCCUUC__UUCU\n3'-UUU...GCCGC_______________U____AA____AUACGUCA____GU__________A_____GUUAU...ACG-5'\n_____________|________________________________________________________|\n_____________94_______________________________________________________45\n |
188 -- 194 |
51 -- 57 |
-29.0191 kcal/mol |
11.8112 kcal/mol |
5.57675 kcal/mol |
148 201@LB@ | |@LB@5'-CGC...CGCGU CUUGAAG U GAUAUA AU AG GUGAA...CUG-3'@LB@ UCGUAC GA UCAA GUGC AAUU AAAGAGGAAG AAGA@LB@ |||||| || |||| |||| |||| |||:|||||| ||||@LB@ AGCAUG CU AGUU CACG UUAA UUUUUCCUUC UUCU@LB@3'-UUU...GCCGC U AA AUACGUCA GU A GUUAU...ACG-5'@LB@ | |@LB@ 94 45@LB@@LB@@LB@Energy -11.63 kcal/mol@LB@Hybridization Energy -29.0191 kcal/mol@LB@Unfolding Energy - mRNA 11.8112 kcal/mol@LB@Unfolding Energy - sRNA 5.57675 kcal/mol@LB@@LB@Position - mRNA 149 -- 200@LB@Position - sRNA 46 -- 93@LB@Position Seed - mRNA 188 -- 194@LB@Position Seed - sRNA 51 -- 57@LB@ |
