146 |
0.005657 |
0.1365 |
b4322 |
uxuA |
-7.47 |
0.371307 |
180 -- 195 |
52 -- 75 |
mannonate hydrolase |
|
_____________179______________________196\n_____________|________________________|\n5'-CAU...ACCCA________________________AAAUC...AUA-3'\n______________CUAUGU________GAAAGAGGAA\n______________|||||:________:|||:|||||\n______________GAUACG________UUUUUUCCUU\n3'-UUU...AACAC______UCAUUAAG__________CAUUC...ACG-5'\n_____________|________________________|\n_____________76_______________________51\n |
189 -- 195 |
52 -- 58 |
-13.8583 kcal/mol |
2.68591 kcal/mol |
3.70263 kcal/mol |
179 196@LB@ | |@LB@5'-CAU...ACCCA AAAUC...AUA-3'@LB@ CUAUGU GAAAGAGGAA@LB@ |||||: :|||:|||||@LB@ GAUACG UUUUUUCCUU@LB@3'-UUU...AACAC UCAUUAAG CAUUC...ACG-5'@LB@ | |@LB@ 76 51@LB@@LB@@LB@Energy -7.47 kcal/mol@LB@Hybridization Energy -13.8583 kcal/mol@LB@Unfolding Energy - mRNA 2.68591 kcal/mol@LB@Unfolding Energy - sRNA 3.70263 kcal/mol@LB@@LB@Position - mRNA 180 -- 195@LB@Position - sRNA 52 -- 75@LB@Position Seed - mRNA 189 -- 195@LB@Position Seed - sRNA 52 -- 58@LB@ |
168 |
0.006702 |
0.1406 |
b2051 |
wcaH |
-7.67 |
0.342256 |
86 -- 123 |
5 -- 40 |
GDP-mannose mannosyl hydrolase |
|
_____________85_______________________________________124\n_____________|________________________________________|\n5'-GCG...ACUGC____U___AC_____UG____A_______UG_________GAAAU...UUG-3'\n______________UGGA_GUG__GCGCC__CAUC_GCUUGGC___GUA_UCAC\n______________||||_|:|__:||||__||||_|||||:|___|:|_||||\n______________ACCU_CGC__UGCGG__GUAG_CGAACUG___CGU_AGUG\n3'-UUU...GUUAU________GU___________________CAA___A____GACG-5'\n_____________|________________________________________|\n_____________41_______________________________________4\n |
108 -- 114 |
16 -- 22 |
-36.6804 kcal/mol |
13.756 kcal/mol |
15.262 kcal/mol |
85 124@LB@ | |@LB@5'-GCG...ACUGC U AC UG A UG GAAAU...UUG-3'@LB@ UGGA GUG GCGCC CAUC GCUUGGC GUA UCAC@LB@ |||| |:| :|||| |||| |||||:| |:| ||||@LB@ ACCU CGC UGCGG GUAG CGAACUG CGU AGUG@LB@3'-UUU...GUUAU GU CAA A GACG-5'@LB@ | |@LB@ 41 4@LB@@LB@@LB@Energy -7.67 kcal/mol@LB@Hybridization Energy -36.6804 kcal/mol@LB@Unfolding Energy - mRNA 13.756 kcal/mol@LB@Unfolding Energy - sRNA 15.262 kcal/mol@LB@@LB@Position - mRNA 86 -- 123@LB@Position - sRNA 5 -- 40@LB@Position Seed - mRNA 108 -- 114@LB@Position Seed - sRNA 16 -- 22@LB@ |
32 |
0.0001844 |
0.0203 |
b0006 |
yaaA |
-10.88 |
0.067423 |
215 -- 223 |
1 -- 9 |
peroxide resistance protein lowers intracellular iron |
|
_____________214_______224\n_____________|_________|\n5'-UUC...CUUAU_________GAAAA...AGU-3'\n______________UUCACCUGC\n______________|||||||||\n______________AAGUGGACG\n3'-UUU...AACGU_________-5'\n_____________|________|\n_____________10_______1\n |
217 -- 223 |
1 -- 7 |
-15.2887 kcal/mol |
2.04449 kcal/mol |
2.37317 kcal/mol |
214 224@LB@ | |@LB@5'-UUC...CUUAU GAAAA...AGU-3'@LB@ UUCACCUGC@LB@ |||||||||@LB@ AAGUGGACG@LB@3'-UUU...AACGU -5'@LB@ | |@LB@ 10 1@LB@@LB@@LB@Energy -10.88 kcal/mol@LB@Hybridization Energy -15.2887 kcal/mol@LB@Unfolding Energy - mRNA 2.04449 kcal/mol@LB@Unfolding Energy - sRNA 2.37317 kcal/mol@LB@@LB@Position - mRNA 215 -- 223@LB@Position - sRNA 1 -- 9@LB@Position Seed - mRNA 217 -- 223@LB@Position Seed - sRNA 1 -- 7@LB@ |
167 |
0.006646 |
0.1402 |
b0007 |
yaaJ |
-8.17 |
0.274480 |
254 -- 261 |
1 -- 8 |
putative transporter |
|
_____________253______262\n_____________|________|\n5'-CAA...AUGAU________UCUUC...GAU-3'\n______________UUACCUGC\n______________|:||||||\n______________AGUGGACG\n3'-UUU...ACGUA________-5'\n_____________|_______|\n_____________9_______1\n |
255 -- 261 |
1 -- 7 |
-12.8229 kcal/mol |
2.29081 kcal/mol |
2.36381 kcal/mol |
253 262@LB@ | |@LB@5'-CAA...AUGAU UCUUC...GAU-3'@LB@ UUACCUGC@LB@ |:||||||@LB@ AGUGGACG@LB@3'-UUU...ACGUA -5'@LB@ | |@LB@ 9 1@LB@@LB@@LB@Energy -8.17 kcal/mol@LB@Hybridization Energy -12.8229 kcal/mol@LB@Unfolding Energy - mRNA 2.29081 kcal/mol@LB@Unfolding Energy - sRNA 2.36381 kcal/mol@LB@@LB@Position - mRNA 254 -- 261@LB@Position - sRNA 1 -- 8@LB@Position Seed - mRNA 255 -- 261@LB@Position Seed - sRNA 1 -- 7@LB@ |
156 |
0.006066 |
0.137 |
b0005 |
yaaX |
-9.16 |
0.170742 |
96 -- 118 |
53 -- 73 |
DUF2502 family putative periplasmic protein |
b2390 |
_____________95______________________119\n_____________|_______________________|\n5'-UCU...AAUAA_________C_______UU____UUGCG...AAU-3'\n______________AUGCGGUAA_UUAGAGA__AGGA\n______________||||:||||_|:|:|:|__||||\n______________UACGUCAUU_AGUUUUU__UCCU\n3'-UUU...CACGA_________A_____________UCAUU...ACG-5'\n_____________|_______________________|\n_____________74______________________52\n |
98 -- 104 |
65 -- 71 |
-18.9701 kcal/mol |
6.27714 kcal/mol |
3.52907 kcal/mol |
95 119@LB@ | |@LB@5'-UCU...AAUAA C UU UUGCG...AAU-3'@LB@ AUGCGGUAA UUAGAGA AGGA@LB@ ||||:|||| |:|:|:| ||||@LB@ UACGUCAUU AGUUUUU UCCU@LB@3'-UUU...CACGA A UCAUU...ACG-5'@LB@ | |@LB@ 74 52@LB@@LB@@LB@Energy -9.16 kcal/mol@LB@Hybridization Energy -18.9701 kcal/mol@LB@Unfolding Energy - mRNA 6.27714 kcal/mol@LB@Unfolding Energy - sRNA 3.52907 kcal/mol@LB@@LB@Position - mRNA 96 -- 118@LB@Position - sRNA 53 -- 73@LB@Position Seed - mRNA 98 -- 104@LB@Position Seed - sRNA 65 -- 71@LB@ |
89 |
0.002455 |
0.09689 |
b0466 |
ybaM |
-10.99 |
0.063193 |
248 -- 263 |
68 -- 82 |
DUF2496 family protein |
|
_____________247______________264\n_____________|________________|\n5'-GCA...GAUUU__________C__G__GAAAA...CGC-3'\n______________GAUUGUGCUG_UG_AG\n______________:||||||||:_||_||\n______________UUAACACGAU_AC_UC\n3'-UUU...CUUAG_____________G__AUUAA...ACG-5'\n_____________|________________|\n_____________83_______________67\n |
251 -- 257 |
73 -- 79 |
-16.1643 kcal/mol |
2.45269 kcal/mol |
2.72435 kcal/mol |
247 264@LB@ | |@LB@5'-GCA...GAUUU C G GAAAA...CGC-3'@LB@ GAUUGUGCUG UG AG@LB@ :||||||||: || ||@LB@ UUAACACGAU AC UC@LB@3'-UUU...CUUAG G AUUAA...ACG-5'@LB@ | |@LB@ 83 67@LB@@LB@@LB@Energy -10.99 kcal/mol@LB@Hybridization Energy -16.1643 kcal/mol@LB@Unfolding Energy - mRNA 2.45269 kcal/mol@LB@Unfolding Energy - sRNA 2.72435 kcal/mol@LB@@LB@Position - mRNA 248 -- 263@LB@Position - sRNA 68 -- 82@LB@Position Seed - mRNA 251 -- 257@LB@Position Seed - sRNA 73 -- 79@LB@ |
126 |
0.004539 |
0.1258 |
b0546 |
ybcM |
-11.00 |
0.062763 |
188 -- 220 |
45 -- 91 |
DLP12 prophage; putative DNA-binding transcriptional regulator |
b1499 b0564 b3515 b4116 b0566 b3516 |
_____________187_____________________________________________221\n_____________|_______________________________________________|\n5'-GCU...AUAAA___G__UGA__GUA_________A_______________________UAACU...GUC-3'\n______________GUA_GG___GA___UGCUG_GCA______________GAGGUAAGAC\n______________|||_|:___:|___||||:_|||______________||:|||||||\n______________CAU_CU___UU___ACGAU_CGU______________CUUCAUUCUG\n3'-UUU...CGCAG___G__UAG__AAC_____A___CAUUAAGUUUUUUC__________UUAUA...ACG-5'\n_____________|_______________________________________________|\n_____________92______________________________________________44\n |
214 -- 220 |
45 -- 51 |
-23.4531 kcal/mol |
6.72952 kcal/mol |
5.72765 kcal/mol |
187 221@LB@ | |@LB@5'-GCU...AUAAA G UGA GUA A UAACU...GUC-3'@LB@ GUA GG GA UGCUG GCA GAGGUAAGAC@LB@ ||| |: :| ||||: ||| ||:|||||||@LB@ CAU CU UU ACGAU CGU CUUCAUUCUG@LB@3'-UUU...CGCAG G UAG AAC A CAUUAAGUUUUUUC UUAUA...ACG-5'@LB@ | |@LB@ 92 44@LB@@LB@@LB@Energy -11.00 kcal/mol@LB@Hybridization Energy -23.4531 kcal/mol@LB@Unfolding Energy - mRNA 6.72952 kcal/mol@LB@Unfolding Energy - sRNA 5.72765 kcal/mol@LB@@LB@Position - mRNA 188 -- 220@LB@Position - sRNA 45 -- 91@LB@Position Seed - mRNA 214 -- 220@LB@Position Seed - sRNA 45 -- 51@LB@ |
69 |
0.001222 |
0.06239 |
b0699 |
ybfA |
-13.19 |
0.016050 |
183 -- 205 |
37 -- 62 |
DUF2517 family protein |
|
_____________182________________________206\n_____________|__________________________|\n5'-AUG...AGAUA____________AAA___________ACUCU...GGA-3'\n______________CAAAAGGGGGAG______AGUAUGGA\n______________|||||::||:||______|:||||||\n______________GUUUUUUCCUUC______UUAUACCU\n3'-UUU...AUUAA____________AUUCUG________CGCGU...ACG-5'\n_____________|__________________________|\n_____________63_________________________36\n |
199 -- 205 |
37 -- 43 |
-21.7 kcal/mol |
3.27833 kcal/mol |
5.2343 kcal/mol |
182 206@LB@ | |@LB@5'-AUG...AGAUA AAA ACUCU...GGA-3'@LB@ CAAAAGGGGGAG AGUAUGGA@LB@ |||||::||:|| |:||||||@LB@ GUUUUUUCCUUC UUAUACCU@LB@3'-UUU...AUUAA AUUCUG CGCGU...ACG-5'@LB@ | |@LB@ 63 36@LB@@LB@@LB@Energy -13.19 kcal/mol@LB@Hybridization Energy -21.7 kcal/mol@LB@Unfolding Energy - mRNA 3.27833 kcal/mol@LB@Unfolding Energy - sRNA 5.2343 kcal/mol@LB@@LB@Position - mRNA 183 -- 205@LB@Position - sRNA 37 -- 62@LB@Position Seed - mRNA 199 -- 205@LB@Position Seed - sRNA 37 -- 43@LB@ |
62 |
0.001027 |
0.05816 |
b0717 |
ybgP |
-6.75 |
0.488398 |
48 -- 57 |
53 -- 62 |
putative periplasmic pilin chaperone |
b3047 |
_____________47_________58\n_____________|__________|\n5'-GCG...GUUGG__________CAUGC...CCA-3'\n______________CGAGGAAGGA\n______________|:|::|||||\n______________GUUUUUUCCU\n3'-UUU...AUUAA__________UCAUU...ACG-5'\n_____________|__________|\n_____________63_________52\n |
51 -- 57 |
53 -- 59 |
-10.1576 kcal/mol |
0.982686 kcal/mol |
2.4254 kcal/mol |
47 58@LB@ | |@LB@5'-GCG...GUUGG CAUGC...CCA-3'@LB@ CGAGGAAGGA@LB@ |:|::|||||@LB@ GUUUUUUCCU@LB@3'-UUU...AUUAA UCAUU...ACG-5'@LB@ | |@LB@ 63 52@LB@@LB@@LB@Energy -6.75 kcal/mol@LB@Hybridization Energy -10.1576 kcal/mol@LB@Unfolding Energy - mRNA 0.982686 kcal/mol@LB@Unfolding Energy - sRNA 2.4254 kcal/mol@LB@@LB@Position - mRNA 48 -- 57@LB@Position - sRNA 53 -- 62@LB@Position Seed - mRNA 51 -- 57@LB@Position Seed - sRNA 53 -- 59@LB@ |
132 |
0.004965 |
0.1313 |
b0876 |
ybjD |
-10.35 |
0.091015 |
20 -- 74 |
49 -- 93 |
putative OLD family ATP-dependent endonuclease; DUF2813 family protein |
|
_____________19______________________________________________________75\n_____________|_______________________________________________________|\n5'-CGU...AUUUA__A___U_____U___AUUU_____UUUU_____ACUUA____C___________UAACG...GGG-3'\n______________UC_UGC_AAUUA_UUG____UGUUG____UGCAG_____UCAG_AAGAGGGAGUA\n______________||_|:|_|||:|_|||____||:|:____|||||_____|||:_||:|||:||||\n______________AG_AUG_UUAGU_AAC____ACGAU____ACGUC_____AGUU_UUUUCCUUCAU\n3'-UUU...GCCGC__C___C_____U_____________________AUUA_________________UCUGU...ACG-5'\n_____________|_______________________________________________________|\n_____________94______________________________________________________48\n |
68 -- 74 |
49 -- 55 |
-28.5607 kcal/mol |
13.348 kcal/mol |
4.86987 kcal/mol |
19 75@LB@ | |@LB@5'-CGU...AUUUA A U U AUUU UUUU ACUUA C UAACG...GGG-3'@LB@ UC UGC AAUUA UUG UGUUG UGCAG UCAG AAGAGGGAGUA@LB@ || |:| |||:| ||| ||:|: ||||| |||: ||:|||:||||@LB@ AG AUG UUAGU AAC ACGAU ACGUC AGUU UUUUCCUUCAU@LB@3'-UUU...GCCGC C C U AUUA UCUGU...ACG-5'@LB@ | |@LB@ 94 48@LB@@LB@@LB@Energy -10.35 kcal/mol@LB@Hybridization Energy -28.5607 kcal/mol@LB@Unfolding Energy - mRNA 13.348 kcal/mol@LB@Unfolding Energy - sRNA 4.86987 kcal/mol@LB@@LB@Position - mRNA 20 -- 74@LB@Position - sRNA 49 -- 93@LB@Position Seed - mRNA 68 -- 74@LB@Position Seed - sRNA 49 -- 55@LB@ |