| 178 |
0.007484 |
0.1481 |
b1243 |
oppA |
-9.58 |
0.138030 |
24 -- 34 |
81 -- 91 |
oligopeptide ABC transporter periplasmic binding protein |
|
_____________23__________35\n_____________|___________|\n5'-UGU...ACACA___________CAUAA...UCA-3'\n______________GUACGAAUCGA\n______________|||||||||:|\n______________CAUGCUUAGUU\n3'-UUU...CGCAG___________AACAC...ACG-5'\n_____________|___________|\n_____________92__________80\n |
28 -- 34 |
81 -- 87 |
-14.5847 kcal/mol |
2.82098 kcal/mol |
2.19089 kcal/mol |
23 35@LB@ | |@LB@5'-UGU...ACACA CAUAA...UCA-3'@LB@ GUACGAAUCGA@LB@ |||||||||:|@LB@ CAUGCUUAGUU@LB@3'-UUU...CGCAG AACAC...ACG-5'@LB@ | |@LB@ 92 80@LB@@LB@@LB@Energy -9.58 kcal/mol@LB@Hybridization Energy -14.5847 kcal/mol@LB@Unfolding Energy - mRNA 2.82098 kcal/mol@LB@Unfolding Energy - sRNA 2.19089 kcal/mol@LB@@LB@Position - mRNA 24 -- 34@LB@Position - sRNA 81 -- 91@LB@Position Seed - mRNA 28 -- 34@LB@Position Seed - sRNA 81 -- 87@LB@ |
| 175 |
0.007208 |
0.145 |
b1444 |
patD |
-10.32 |
0.092173 |
197 -- 205 |
69 -- 77 |
gamma-aminobutyraldehyde dehydrogenase |
|
_____________196_______206\n_____________|_________|\n5'-UCG...GAAUA_________ACAUA...UUG-3'\n______________UGCUAUGCA\n______________|||||||||\n______________ACGAUACGU\n3'-UUU...UUAAC_________CAUUA...ACG-5'\n_____________|_________|\n_____________78________68\n |
199 -- 205 |
69 -- 75 |
-13.9965 kcal/mol |
1.91367 kcal/mol |
1.75858 kcal/mol |
196 206@LB@ | |@LB@5'-UCG...GAAUA ACAUA...UUG-3'@LB@ UGCUAUGCA@LB@ |||||||||@LB@ ACGAUACGU@LB@3'-UUU...UUAAC CAUUA...ACG-5'@LB@ | |@LB@ 78 68@LB@@LB@@LB@Energy -10.32 kcal/mol@LB@Hybridization Energy -13.9965 kcal/mol@LB@Unfolding Energy - mRNA 1.91367 kcal/mol@LB@Unfolding Energy - sRNA 1.75858 kcal/mol@LB@@LB@Position - mRNA 197 -- 205@LB@Position - sRNA 69 -- 77@LB@Position Seed - mRNA 199 -- 205@LB@Position Seed - sRNA 69 -- 75@LB@ |
| 127 |
0.004567 |
0.1258 |
b2320 |
pdxB |
-8.62 |
0.223386 |
291 -- 299 |
20 -- 28 |
erythronate-4-phosphate dehydrogenase |
|
_____________290_______300\n_____________|_________|\n5'-ACG...CAAUC_________C-3'\n______________CCCGUCGCU\n______________|||:|||||\n______________GGGUAGCGA\n3'-UUU...GUUGC_________ACUGC...ACG-5'\n_____________|_________|\n_____________29________19\n |
293 -- 299 |
20 -- 26 |
-15.7186 kcal/mol |
1.54056 kcal/mol |
5.56153 kcal/mol |
290 300@LB@ | |@LB@5'-ACG...CAAUC C-3'@LB@ CCCGUCGCU@LB@ |||:|||||@LB@ GGGUAGCGA@LB@3'-UUU...GUUGC ACUGC...ACG-5'@LB@ | |@LB@ 29 19@LB@@LB@@LB@Energy -8.62 kcal/mol@LB@Hybridization Energy -15.7186 kcal/mol@LB@Unfolding Energy - mRNA 1.54056 kcal/mol@LB@Unfolding Energy - sRNA 5.56153 kcal/mol@LB@@LB@Position - mRNA 291 -- 299@LB@Position - sRNA 20 -- 28@LB@Position Seed - mRNA 293 -- 299@LB@Position Seed - sRNA 20 -- 26@LB@ |
| 118 |
0.004043 |
0.119 |
b1636 |
pdxY |
-15.07 |
0.004282 |
119 -- 169 |
46 -- 90 |
pyridoxamine kinase |
|
_____________118___________________________________________________170\n_____________|_____________________________________________________|\n5'-UAU...AGAAU___U____U_________GGAAAUA_____U___G_G________________AAUCA...UCU-3'\n______________UAC__GUC_GAUU_UGCU_______AUGCA_UAA_U_GAAAGGGGGAGUGAGA\n______________|||__:||_:|||_||||_______|||||_|||_|_:|||::||:|||:|||\n______________AUG__UAG_UUAA_ACGA_______UACGU_AUU_A_UUUUUUCCUUCAUUCU\n3'-UUU...GCAGC___CU________C________________C___A_G________________GUUAU...ACG-5'\n_____________|_____________________________________________________|\n_____________91____________________________________________________45\n |
163 -- 169 |
46 -- 52 |
-32.4349 kcal/mol |
11.9314 kcal/mol |
5.43414 kcal/mol |
118 170@LB@ | |@LB@5'-UAU...AGAAU U U GGAAAUA U G G AAUCA...UCU-3'@LB@ UAC GUC GAUU UGCU AUGCA UAA U GAAAGGGGGAGUGAGA@LB@ ||| :|| :||| |||| ||||| ||| | :|||::||:|||:|||@LB@ AUG UAG UUAA ACGA UACGU AUU A UUUUUUCCUUCAUUCU@LB@3'-UUU...GCAGC CU C C A G GUUAU...ACG-5'@LB@ | |@LB@ 91 45@LB@@LB@@LB@Energy -15.07 kcal/mol@LB@Hybridization Energy -32.4349 kcal/mol@LB@Unfolding Energy - mRNA 11.9314 kcal/mol@LB@Unfolding Energy - sRNA 5.43414 kcal/mol@LB@@LB@Position - mRNA 119 -- 169@LB@Position - sRNA 46 -- 90@LB@Position Seed - mRNA 163 -- 169@LB@Position Seed - sRNA 46 -- 52@LB@ |
| 42 |
0.0003514 |
0.02948 |
b3847 |
pepQ |
-12.53 |
0.024661 |
145 -- 205 |
37 -- 89 |
proline dipeptidase |
|
_____________144______________________________________________________________206\n_____________|________________________________________________________________|\n5'-UUG...UCUGG_________________AGA_____AGACU___GG________ACA____GGUAA___A_____AUCAC...UUC-3'\n______________AUGAA_CGA_UGUGCUA___UGCGG_____UAA__UCAAAAAA___GAAG______AA_AUGGA\n______________|:|||_|:|_|||||||___|||:|_____|||__||||||||___||||______||_|||||\n______________UGCUU_GUU_ACACGAU___ACGUC_____AUU__AGUUUUUU___CUUC______UU_UACCU\n3'-UUU...CAGCA_____A___A_______________________A_________C______AUUCUG__A_____CGCGU...ACG-5'\n_____________|________________________________________________________________|\n_____________90_______________________________________________________________36\n |
153 -- 159 |
73 -- 79 |
-31.666 kcal/mol |
11.3417 kcal/mol |
7.78939 kcal/mol |
144 206@LB@ | |@LB@5'-UUG...UCUGG AGA AGACU GG ACA GGUAA A AUCAC...UUC-3'@LB@ AUGAA CGA UGUGCUA UGCGG UAA UCAAAAAA GAAG AA AUGGA@LB@ |:||| |:| ||||||| |||:| ||| |||||||| |||| || |||||@LB@ UGCUU GUU ACACGAU ACGUC AUU AGUUUUUU CUUC UU UACCU@LB@3'-UUU...CAGCA A A A C AUUCUG A CGCGU...ACG-5'@LB@ | |@LB@ 90 36@LB@@LB@@LB@Energy -12.53 kcal/mol@LB@Hybridization Energy -31.666 kcal/mol@LB@Unfolding Energy - mRNA 11.3417 kcal/mol@LB@Unfolding Energy - sRNA 7.78939 kcal/mol@LB@@LB@Position - mRNA 145 -- 205@LB@Position - sRNA 37 -- 89@LB@Position Seed - mRNA 153 -- 159@LB@Position Seed - sRNA 73 -- 79@LB@ |
| 161 |
0.006314 |
0.1377 |
b4099 |
phnI |
-7.36 |
0.387929 |
194 -- 228 |
46 -- 79 |
ribophosphonate triphosphate synthase complex putative catalytic subunit |
|
_____________193__________________________________229\n_____________|____________________________________|\n5'-AGC...GGAGG______G_____C__UGC___U_________C____AGGCG...GCG-3'\n______________UGUGCU_AUGUA_GU____CG_GAAAGGGGG_GAGA\n______________||||||_|||:|_||____|:_:|||||::|_:|||\n______________ACACGA_UACGU_CA____GU_UUUUCCUUC_UUCU\n3'-UUU...AGUUA_______________UUAA__U_________A____GUUAU...ACG-5'\n_____________|____________________________________|\n_____________80___________________________________45\n |
217 -- 223 |
51 -- 57 |
-26.8268 kcal/mol |
14.1464 kcal/mol |
5.32077 kcal/mol |
193 229@LB@ | |@LB@5'-AGC...GGAGG G C UGC U C AGGCG...GCG-3'@LB@ UGUGCU AUGUA GU CG GAAAGGGGG GAGA@LB@ |||||| |||:| || |: :|||||::| :|||@LB@ ACACGA UACGU CA GU UUUUCCUUC UUCU@LB@3'-UUU...AGUUA UUAA U A GUUAU...ACG-5'@LB@ | |@LB@ 80 45@LB@@LB@@LB@Energy -7.36 kcal/mol@LB@Hybridization Energy -26.8268 kcal/mol@LB@Unfolding Energy - mRNA 14.1464 kcal/mol@LB@Unfolding Energy - sRNA 5.32077 kcal/mol@LB@@LB@Position - mRNA 194 -- 228@LB@Position - sRNA 46 -- 79@LB@Position Seed - mRNA 217 -- 223@LB@Position Seed - sRNA 51 -- 57@LB@ |
| 186 |
0.008102 |
0.1535 |
b1768 |
pncA |
-9.42 |
0.149628 |
191 -- 212 |
21 -- 39 |
nicotinamidase/pyrazinamidase |
|
_____________190____________________213\n_____________|______________________|\n5'-UAA...AUUAA____A_U_________CC____GCCCU...CUA-3'\n______________GGAG_C_GUAAUGCCC__UCGC\n______________||||_|_|:||:||||__||||\n______________CCUC_G_CGUUGCGGG__AGCG\n3'-UUU...UUAUA________________U_____AACUG...ACG-5'\n_____________|______________________|\n_____________40_____________________20\n |
200 -- 206 |
26 -- 32 |
-26.7187 kcal/mol |
5.14291 kcal/mol |
12.1569 kcal/mol |
190 213@LB@ | |@LB@5'-UAA...AUUAA A U CC GCCCU...CUA-3'@LB@ GGAG C GUAAUGCCC UCGC@LB@ |||| | |:||:|||| ||||@LB@ CCUC G CGUUGCGGG AGCG@LB@3'-UUU...UUAUA U AACUG...ACG-5'@LB@ | |@LB@ 40 20@LB@@LB@@LB@Energy -9.42 kcal/mol@LB@Hybridization Energy -26.7187 kcal/mol@LB@Unfolding Energy - mRNA 5.14291 kcal/mol@LB@Unfolding Energy - sRNA 12.1569 kcal/mol@LB@@LB@Position - mRNA 191 -- 212@LB@Position - sRNA 21 -- 39@LB@Position Seed - mRNA 200 -- 206@LB@Position Seed - sRNA 26 -- 32@LB@ |
| 100 |
0.003303 |
0.1114 |
b1126 |
potA |
-10.42 |
0.087379 |
73 -- 89 |
61 -- 76 |
spermidine/putrescine ABC transporter ATPase |
|
_____________72________________90\n_____________|_________________|\n5'-CAA...AUAAA____A_C__________CAACA...UUC-3'\n______________GCUA_G_CAGUAAUUCA\n______________||||_|_||||||||||\n______________CGAU_C_GUCAUUAAGU\n3'-UUU...UAACA____A____________UUUUU...ACG-5'\n_____________|_________________|\n_____________77________________60\n |
83 -- 89 |
61 -- 67 |
-17.6149 kcal/mol |
3.71554 kcal/mol |
3.47887 kcal/mol |
72 90@LB@ | |@LB@5'-CAA...AUAAA A C CAACA...UUC-3'@LB@ GCUA G CAGUAAUUCA@LB@ |||| | ||||||||||@LB@ CGAU C GUCAUUAAGU@LB@3'-UUU...UAACA A UUUUU...ACG-5'@LB@ | |@LB@ 77 60@LB@@LB@@LB@Energy -10.42 kcal/mol@LB@Hybridization Energy -17.6149 kcal/mol@LB@Unfolding Energy - mRNA 3.71554 kcal/mol@LB@Unfolding Energy - sRNA 3.47887 kcal/mol@LB@@LB@Position - mRNA 73 -- 89@LB@Position - sRNA 61 -- 76@LB@Position Seed - mRNA 83 -- 89@LB@Position Seed - sRNA 61 -- 67@LB@ |
| 193 |
0.00868 |
0.1548 |
b4226 |
ppa |
-9.88 |
0.117380 |
102 -- 122 |
43 -- 61 |
inorganic pyrophosphatase |
|
_____________101___________________123\n_____________|_____________________|\n5'-AUA...CUGGU__________AAUG_______AAACA...UCG-3'\n______________GAAAAAGGAA____AAGACGA\n______________:|||||||||____|||||:|\n______________UUUUUUCCUU____UUCUGUU\n3'-UUU...UUAAG__________CA_________AUACC...ACG-5'\n_____________|_____________________|\n_____________62____________________42\n |
116 -- 122 |
43 -- 49 |
-15.2744 kcal/mol |
3.19261 kcal/mol |
2.19883 kcal/mol |
101 123@LB@ | |@LB@5'-AUA...CUGGU AAUG AAACA...UCG-3'@LB@ GAAAAAGGAA AAGACGA@LB@ :||||||||| |||||:|@LB@ UUUUUUCCUU UUCUGUU@LB@3'-UUU...UUAAG CA AUACC...ACG-5'@LB@ | |@LB@ 62 42@LB@@LB@@LB@Energy -9.88 kcal/mol@LB@Hybridization Energy -15.2744 kcal/mol@LB@Unfolding Energy - mRNA 3.19261 kcal/mol@LB@Unfolding Energy - sRNA 2.19883 kcal/mol@LB@@LB@Position - mRNA 102 -- 122@LB@Position - sRNA 43 -- 61@LB@Position Seed - mRNA 116 -- 122@LB@Position Seed - sRNA 43 -- 49@LB@ |
| 125 |
0.004538 |
0.1258 |
b0951 |
pqiB |
-12.90 |
0.019327 |
185 -- 205 |
37 -- 57 |
paraquat-inducible SoxRS-regulated MCE domain protein |
|
_____________184___________________206\n_____________|_____________________|\n5'-CUG...AGCAU______UCCU___________AUCUA...UUC-3'\n______________GAGGAG____GACAGUAUGGA\n______________:||||:____||||:||||||\n______________UUCCUU____CUGUUAUACCU\n3'-UUU...GUUUU______CAUU___________CGCGU...ACG-5'\n_____________|_____________________|\n_____________58____________________36\n |
199 -- 205 |
37 -- 43 |
-21.8788 kcal/mol |
5.24969 kcal/mol |
3.68958 kcal/mol |
184 206@LB@ | |@LB@5'-CUG...AGCAU UCCU AUCUA...UUC-3'@LB@ GAGGAG GACAGUAUGGA@LB@ :||||: ||||:||||||@LB@ UUCCUU CUGUUAUACCU@LB@3'-UUU...GUUUU CAUU CGCGU...ACG-5'@LB@ | |@LB@ 58 36@LB@@LB@@LB@Energy -12.90 kcal/mol@LB@Hybridization Energy -21.8788 kcal/mol@LB@Unfolding Energy - mRNA 5.24969 kcal/mol@LB@Unfolding Energy - sRNA 3.68958 kcal/mol@LB@@LB@Position - mRNA 185 -- 205@LB@Position - sRNA 37 -- 57@LB@Position Seed - mRNA 199 -- 205@LB@Position Seed - sRNA 37 -- 43@LB@ |
