160 |
0.006309 |
0.1377 |
b2602 |
yfiL |
-11.97 |
0.035037 |
175 -- 199 |
46 -- 76 |
lipoprotein |
|
_____________174_____________________________200\n_____________|_______________________________|\n5'-CCU...AAUCC__________________________A____AAUGA...GGU-3'\n______________GCUAUGC_____UUUGAAAAAGGA_G_AAGA\n______________|||||||_____||::||||||||_|_||||\n______________CGAUACG_____AAGUUUUUUCCU_C_UUCU\n3'-UUU...UAACA_______UCAUU____________U_A____GUUAU...ACG-5'\n_____________|_______________________________|\n_____________77______________________________45\n |
187 -- 193 |
53 -- 59 |
-23.3315 kcal/mol |
6.08708 kcal/mol |
5.27798 kcal/mol |
174 200@LB@ | |@LB@5'-CCU...AAUCC A AAUGA...GGU-3'@LB@ GCUAUGC UUUGAAAAAGGA G AAGA@LB@ ||||||| ||::|||||||| | ||||@LB@ CGAUACG AAGUUUUUUCCU C UUCU@LB@3'-UUU...UAACA UCAUU U A GUUAU...ACG-5'@LB@ | |@LB@ 77 45@LB@@LB@@LB@Energy -11.97 kcal/mol@LB@Hybridization Energy -23.3315 kcal/mol@LB@Unfolding Energy - mRNA 6.08708 kcal/mol@LB@Unfolding Energy - sRNA 5.27798 kcal/mol@LB@@LB@Position - mRNA 175 -- 199@LB@Position - sRNA 46 -- 76@LB@Position Seed - mRNA 187 -- 193@LB@Position Seed - sRNA 53 -- 59@LB@ |
78 |
0.001866 |
0.08273 |
b2952 |
yggT |
-14.70 |
0.005634 |
84 -- 104 |
37 -- 56 |
putative inner membrane protein; compensates for loss in K+ uptake |
|
_____________83____________________105\n_____________|_____________________|\n5'-AGG...UCUCU_____U__C____________AGCCG...ACA-3'\n______________GGGAA_GU_GGACGAUAUGGA\n______________:||||_||_:|||:|||||||\n______________UCCUU_CA_UCUGUUAUACCU\n3'-UUU...UUUUU________U____________CGCGU...ACG-5'\n_____________|_____________________|\n_____________57____________________36\n |
98 -- 104 |
37 -- 43 |
-24.1681 kcal/mol |
5.76987 kcal/mol |
3.6645 kcal/mol |
83 105@LB@ | |@LB@5'-AGG...UCUCU U C AGCCG...ACA-3'@LB@ GGGAA GU GGACGAUAUGGA@LB@ :|||| || :|||:|||||||@LB@ UCCUU CA UCUGUUAUACCU@LB@3'-UUU...UUUUU U CGCGU...ACG-5'@LB@ | |@LB@ 57 36@LB@@LB@@LB@Energy -14.70 kcal/mol@LB@Hybridization Energy -24.1681 kcal/mol@LB@Unfolding Energy - mRNA 5.76987 kcal/mol@LB@Unfolding Energy - sRNA 3.6645 kcal/mol@LB@@LB@Position - mRNA 84 -- 104@LB@Position - sRNA 37 -- 56@LB@Position Seed - mRNA 98 -- 104@LB@Position Seed - sRNA 37 -- 43@LB@ |
148 |
0.005829 |
0.1368 |
b2962 |
yggX |
-8.12 |
0.280656 |
21 -- 35 |
68 -- 81 |
oxidative damage protective factor for iron-sulfur proteins |
|
_____________20______________36\n_____________|_______________|\n5'-UCA...UAGAU______C________CUUCC...AGA-3'\n______________AUUGUG_CUAUGUGG\n______________||||||_|||||::|\n______________UAACAC_GAUACGUC\n3'-UUU...UUAGU_______________AUUAA...ACG-5'\n_____________|_______________|\n_____________82______________67\n |
28 -- 34 |
69 -- 75 |
-14.4611 kcal/mol |
4.51468 kcal/mol |
1.82249 kcal/mol |
20 36@LB@ | |@LB@5'-UCA...UAGAU C CUUCC...AGA-3'@LB@ AUUGUG CUAUGUGG@LB@ |||||| |||||::|@LB@ UAACAC GAUACGUC@LB@3'-UUU...UUAGU AUUAA...ACG-5'@LB@ | |@LB@ 82 67@LB@@LB@@LB@Energy -8.12 kcal/mol@LB@Hybridization Energy -14.4611 kcal/mol@LB@Unfolding Energy - mRNA 4.51468 kcal/mol@LB@Unfolding Energy - sRNA 1.82249 kcal/mol@LB@@LB@Position - mRNA 21 -- 35@LB@Position - sRNA 68 -- 81@LB@Position Seed - mRNA 28 -- 34@LB@Position Seed - sRNA 69 -- 75@LB@ |
70 |
0.001371 |
0.06901 |
b2989 |
yghU |
-9.78 |
0.124117 |
251 -- 269 |
4 -- 23 |
putative S-transferase |
|
_____________250__________________270\n_____________|____________________|\n5'-UUA...AAAUC_________GC_________AAUAU...CGC-3'\n______________CGC_UGGCG__GCGUUCGCC\n______________|||_||:||__||:|||:||\n______________GCG_ACUGC__CGUAAGUGG\n3'-UUU...GGGUA___A_____AA_________ACG-5'\n_____________|____________________|\n_____________24___________________3\n |
263 -- 269 |
4 -- 10 |
-26.6155 kcal/mol |
8.73321 kcal/mol |
8.10973 kcal/mol |
250 270@LB@ | |@LB@5'-UUA...AAAUC GC AAUAU...CGC-3'@LB@ CGC UGGCG GCGUUCGCC@LB@ ||| ||:|| ||:|||:||@LB@ GCG ACUGC CGUAAGUGG@LB@3'-UUU...GGGUA A AA ACG-5'@LB@ | |@LB@ 24 3@LB@@LB@@LB@Energy -9.78 kcal/mol@LB@Hybridization Energy -26.6155 kcal/mol@LB@Unfolding Energy - mRNA 8.73321 kcal/mol@LB@Unfolding Energy - sRNA 8.10973 kcal/mol@LB@@LB@Position - mRNA 251 -- 269@LB@Position - sRNA 4 -- 23@LB@Position Seed - mRNA 263 -- 269@LB@Position Seed - sRNA 4 -- 10@LB@ |
80 |
0.001886 |
0.08273 |
b3205 |
yhbJ |
-9.88 |
0.117656 |
21 -- 27 |
1 -- 7 |
adaptor protein for GlmZ/GlmY sRNA decay glucosamine-6-phosphate-regulated; NTPase |
|
_____________20______28\n_____________|_______|\n5'-CGG...AAACG_______AUACU...CCG-3'\n______________CACCUGC\n______________|||||||\n______________GUGGACG\n3'-UUU...CGUAA_______-5'\n_____________|______|\n_____________8______1\n |
21 -- 27 |
1 -- 7 |
-13.6981 kcal/mol |
1.48735 kcal/mol |
2.34039 kcal/mol |
20 28@LB@ | |@LB@5'-CGG...AAACG AUACU...CCG-3'@LB@ CACCUGC@LB@ |||||||@LB@ GUGGACG@LB@3'-UUU...CGUAA -5'@LB@ | |@LB@ 8 1@LB@@LB@@LB@Energy -9.88 kcal/mol@LB@Hybridization Energy -13.6981 kcal/mol@LB@Unfolding Energy - mRNA 1.48735 kcal/mol@LB@Unfolding Energy - sRNA 2.34039 kcal/mol@LB@@LB@Position - mRNA 21 -- 27@LB@Position - sRNA 1 -- 7@LB@Position Seed - mRNA 21 -- 27@LB@Position Seed - sRNA 1 -- 7@LB@ |
113 |
0.00365 |
0.1131 |
b3154 |
yhbP |
-10.91 |
0.065979 |
249 -- 297 |
26 -- 85 |
UPF0306 family protein |
|
_____________248___________________________________________________________298\n_____________|_____________________________________________________________|\n5'-AAA...AUGUU____C___GUG_______C_____________________ACUC____U____U_______UUU-3'\n______________GUCA_UUG___UGUGCAG___________AGGAAG_GGGA_____UGG_GCGC_AAUGCCU\n______________:|||_|||___|:|||||___________||||||_::||_____|||_||||_||:|||:\n______________UAGU_AAC___AUACGUC___________UCCUUC_UUCU_____ACC_CGCG_UUGCGGG\n3'-UUU...AUGCU____U___ACG_______AUUAAGUUUUU______A____GUUAU___U____________UAGCG...ACG-5'\n_____________|_____________________________________________________________|\n_____________86____________________________________________________________25\n |
260 -- 266 |
68 -- 74 |
-42.816 kcal/mol |
18.2405 kcal/mol |
13.6657 kcal/mol |
248 298@LB@ | |@LB@5'-AAA...AUGUU C GUG C ACUC U U UUU-3'@LB@ GUCA UUG UGUGCAG AGGAAG GGGA UGG GCGC AAUGCCU@LB@ :||| ||| |:||||| |||||| ::|| ||| |||| ||:|||:@LB@ UAGU AAC AUACGUC UCCUUC UUCU ACC CGCG UUGCGGG@LB@3'-UUU...AUGCU U ACG AUUAAGUUUUU A GUUAU U UAGCG...ACG-5'@LB@ | |@LB@ 86 25@LB@@LB@@LB@Energy -10.91 kcal/mol@LB@Hybridization Energy -42.816 kcal/mol@LB@Unfolding Energy - mRNA 18.2405 kcal/mol@LB@Unfolding Energy - sRNA 13.6657 kcal/mol@LB@@LB@Position - mRNA 249 -- 297@LB@Position - sRNA 26 -- 85@LB@Position Seed - mRNA 260 -- 266@LB@Position Seed - sRNA 68 -- 74@LB@ |
108 |
0.003432 |
0.1114 |
b3159 |
yhbV |
-7.84 |
0.318675 |
148 -- 178 |
4 -- 39 |
U32 peptidase family protein |
|
_____________147___________________________________179\n_____________|_____________________________________|\n5'-GUG...CCGAA__CA_____A_______U_____________A_____GUAAA...AUC-3'\n______________GG__CGCAA___CCA_C_CUUGGCG___CAU_UCACC\n______________||__|||||___|||_|_||||:||___|||_|||||\n______________CC__GCGUU___GGU_G_GAACUGC___GUA_AGUGG\n3'-UUU...UUAUA__UC_____GCG___A_C_______AAC_________ACG-5'\n_____________|_____________________________________|\n_____________40____________________________________3\n |
163 -- 169 |
15 -- 21 |
-29.1995 kcal/mol |
6.07879 kcal/mol |
15.29 kcal/mol |
147 179@LB@ | |@LB@5'-GUG...CCGAA CA A U A GUAAA...AUC-3'@LB@ GG CGCAA CCA C CUUGGCG CAU UCACC@LB@ || ||||| ||| | ||||:|| ||| |||||@LB@ CC GCGUU GGU G GAACUGC GUA AGUGG@LB@3'-UUU...UUAUA UC GCG A C AAC ACG-5'@LB@ | |@LB@ 40 3@LB@@LB@@LB@Energy -7.84 kcal/mol@LB@Hybridization Energy -29.1995 kcal/mol@LB@Unfolding Energy - mRNA 6.07879 kcal/mol@LB@Unfolding Energy - sRNA 15.29 kcal/mol@LB@@LB@Position - mRNA 148 -- 178@LB@Position - sRNA 4 -- 39@LB@Position Seed - mRNA 163 -- 169@LB@Position Seed - sRNA 15 -- 21@LB@ |
139 |
0.00529 |
0.1336 |
b3211 |
yhcC |
-9.14 |
0.172713 |
199 -- 227 |
39 -- 75 |
putative Fe-S oxidoreductase Radical SAM superfamily protein |
|
_____________198___________________________________228\n_____________|_____________________________________|\n5'-UGC...UCAGA_________UA________UU________U_______UUUGG...GCC-3'\n______________UUAUGCAGU____CAGAAA________AG_CAAUAUG\n______________:||||||||____||:|||________||_|||||||\n______________GAUACGUCA____GUUUUU________UC_GUUAUAC\n3'-UUU...AACAC_________UUAA______UCCUUCAU__U_______CUCGC...ACG-5'\n_____________|_____________________________________|\n_____________76____________________________________38\n |
221 -- 227 |
39 -- 45 |
-19.1659 kcal/mol |
3.3824 kcal/mol |
6.6377 kcal/mol |
198 228@LB@ | |@LB@5'-UGC...UCAGA UA UU U UUUGG...GCC-3'@LB@ UUAUGCAGU CAGAAA AG CAAUAUG@LB@ :|||||||| ||:||| || |||||||@LB@ GAUACGUCA GUUUUU UC GUUAUAC@LB@3'-UUU...AACAC UUAA UCCUUCAU U CUCGC...ACG-5'@LB@ | |@LB@ 76 38@LB@@LB@@LB@Energy -9.14 kcal/mol@LB@Hybridization Energy -19.1659 kcal/mol@LB@Unfolding Energy - mRNA 3.3824 kcal/mol@LB@Unfolding Energy - sRNA 6.6377 kcal/mol@LB@@LB@Position - mRNA 199 -- 227@LB@Position - sRNA 39 -- 75@LB@Position Seed - mRNA 221 -- 227@LB@Position Seed - sRNA 39 -- 45@LB@ |
151 |
0.005924 |
0.1368 |
b3248 |
yhdE |
-13.35 |
0.014399 |
2 -- 41 |
1 -- 42 |
dTTP/UTP pyrophosphatase; m(5)UTP/m(5)CTP/pseudo-UTP pyrophosphatase |
|
_____________1___________________________________________42\n_____________|___________________________________________|\n__________5'-U_____C___A_______G_____C_________U______G__GGUGG...AGC-3'\n______________UAUGG_AGC__GGCGCU_GUCGU___AUGUUGC_UUCGCU_GU\n______________|||||_|||__::|||:_:|||:___|:|||||_|||:|:_|:\n______________AUACC_UCG__UUGCGG_UAGCG___UGCAACG_AAGUGG_CG\n3'-UUU...CUGUU_________CG______G_____AAC_______U______A__-5'\n_____________|__________________________________________|\n_____________43_________________________________________1\n |
25 -- 31 |
11 -- 17 |
-43.9582 kcal/mol |
15.3205 kcal/mol |
15.293 kcal/mol |
1 42@LB@ | |@LB@ 5'-U C A G C U G GGUGG...AGC-3'@LB@ UAUGG AGC GGCGCU GUCGU AUGUUGC UUCGCU GU@LB@ ||||| ||| ::|||: :|||: |:||||| |||:|: |:@LB@ AUACC UCG UUGCGG UAGCG UGCAACG AAGUGG CG@LB@3'-UUU...CUGUU CG G AAC U A -5'@LB@ | |@LB@ 43 1@LB@@LB@@LB@Energy -13.35 kcal/mol@LB@Hybridization Energy -43.9582 kcal/mol@LB@Unfolding Energy - mRNA 15.3205 kcal/mol@LB@Unfolding Energy - sRNA 15.293 kcal/mol@LB@@LB@Position - mRNA 2 -- 41@LB@Position - sRNA 1 -- 42@LB@Position Seed - mRNA 25 -- 31@LB@Position Seed - sRNA 11 -- 17@LB@ |
93 |
0.002751 |
0.1042 |
b3407 |
yhgF |
-15.01 |
0.004479 |
248 -- 282 |
1 -- 31 |
putative transcriptional accessory protein |
|
_____________247_________________________________283\n_____________|___________________________________|\n5'-CCC...CAGGC_______GAACA_G______C__C___________UUGAC...CCG-3'\n______________GCGCCCG_____G_UUGACG_UG_CGUUCGCCUGC\n______________:|||||:_____|_||||||_||_|:|||:|||||\n______________UGCGGGU_____C_AACUGC_AC_GUAAGUGGACG\n3'-UUU...CGCGU_______AG____G______A______________-5'\n_____________|__________________________________|\n_____________32_________________________________1\n |
276 -- 282 |
1 -- 7 |
-43.3047 kcal/mol |
13.2535 kcal/mol |
15.0438 kcal/mol |
247 283@LB@ | |@LB@5'-CCC...CAGGC GAACA G C C UUGAC...CCG-3'@LB@ GCGCCCG G UUGACG UG CGUUCGCCUGC@LB@ :|||||: | |||||| || |:|||:|||||@LB@ UGCGGGU C AACUGC AC GUAAGUGGACG@LB@3'-UUU...CGCGU AG G A -5'@LB@ | |@LB@ 32 1@LB@@LB@@LB@Energy -15.01 kcal/mol@LB@Hybridization Energy -43.3047 kcal/mol@LB@Unfolding Energy - mRNA 13.2535 kcal/mol@LB@Unfolding Energy - sRNA 15.0438 kcal/mol@LB@@LB@Position - mRNA 248 -- 282@LB@Position - sRNA 1 -- 31@LB@Position Seed - mRNA 276 -- 282@LB@Position Seed - sRNA 1 -- 7@LB@ |