| 13 |
2.167e-05 |
0.005627 |
b0123 |
cueO |
-18.83 |
0.000188 |
100 -- 180 |
1 -- 93 |
multicopper oxidase (laccase) |
|
_____________99__________________________________________________________________________________________________181\n_____________|___________________________________________________________________________________________________|\n5'-CUG...CAUUA________UUA________C______CU___CC___CCGU_______________U___________________A________U______________UUAAG...CGU-3'\n______________UUGU_CGA___AAUUGUGU__UGCGG__UGA__UUC____AAGGGGAAG___GAC_____________AUGCUCA_CGUUUGAU_UUGU_UUCGCCUGC\n______________|:||_|||___|||||||:__|||:|__|:|__|||____||::|||||___|||_____________|:||:||_||:||||:_|||:_|||:|||||\n______________AGCA_GCU___UUAACACG__ACGUC__AUU__AAG____UUUUCCUUC___CUG_____________UGCGGGU_GCGAACUG_AACG_AAGUGGACG\n3'-UUU...GCCGC____U___UAG________AU_______________UU___________AUU___UUAUACCUCGCGU_______A________C____U_________-5'\n_____________|__________________________________________________________________________________________________|\n_____________94_________________________________________________________________________________________________1\n |
174 -- 180 |
1 -- 7 |
-64.9216 kcal/mol |
25.1682 kcal/mol |
20.925 kcal/mol |
99 181@LB@ | |@LB@5'-CUG...CAUUA UUA C CU CC CCGU U A U UUAAG...CGU-3'@LB@ UUGU CGA AAUUGUGU UGCGG UGA UUC AAGGGGAAG GAC AUGCUCA CGUUUGAU UUGU UUCGCCUGC@LB@ |:|| ||| |||||||: |||:| |:| ||| ||::||||| ||| |:||:|| ||:||||: |||: |||:|||||@LB@ AGCA GCU UUAACACG ACGUC AUU AAG UUUUCCUUC CUG UGCGGGU GCGAACUG AACG AAGUGGACG@LB@3'-UUU...GCCGC U UAG AU UU AUU UUAUACCUCGCGU A C U -5'@LB@ | |@LB@ 94 1@LB@@LB@@LB@Energy -18.83 kcal/mol@LB@Hybridization Energy -64.9216 kcal/mol@LB@Unfolding Energy - mRNA 25.1682 kcal/mol@LB@Unfolding Energy - sRNA 20.925 kcal/mol@LB@@LB@Position - mRNA 100 -- 180@LB@Position - sRNA 1 -- 93@LB@Position Seed - mRNA 174 -- 180@LB@Position Seed - sRNA 1 -- 7@LB@ |
| 183 |
0.007971 |
0.1528 |
b1874 |
cutC |
-9.62 |
0.134922 |
271 -- 300 |
54 -- 87 |
copper homeostasis protein |
|
_____________270________________________________300\n_____________|__________________________________|\n5'-CCG...AGACA_____G____A__________CCC___________-3'\n______________GAGUU_AAUU_UGC___GCAG_____CAAAAGAGG\n______________||:|:_||||_|||___||||_____|||||:|||\n______________CUUAG_UUAA_ACG___CGUC_____GUUUUUUCC\n3'-UUU...GCAUG__________C___AUA____AUUAA_________UUCAU...ACG-5'\n_____________|___________________________________|\n_____________88__________________________________53\n |
294 -- 300 |
54 -- 60 |
-18.7273 kcal/mol |
5.34866 kcal/mol |
3.76003 kcal/mol |
270 300@LB@ | |@LB@5'-CCG...AGACA G A CCC -3'@LB@ GAGUU AAUU UGC GCAG CAAAAGAGG@LB@ ||:|: |||| ||| |||| |||||:|||@LB@ CUUAG UUAA ACG CGUC GUUUUUUCC@LB@3'-UUU...GCAUG C AUA AUUAA UUCAU...ACG-5'@LB@ | |@LB@ 88 53@LB@@LB@@LB@Energy -9.62 kcal/mol@LB@Hybridization Energy -18.7273 kcal/mol@LB@Unfolding Energy - mRNA 5.34866 kcal/mol@LB@Unfolding Energy - sRNA 3.76003 kcal/mol@LB@@LB@Position - mRNA 271 -- 300@LB@Position - sRNA 54 -- 87@LB@Position Seed - mRNA 294 -- 300@LB@Position Seed - sRNA 54 -- 60@LB@ |
| 150 |
0.005897 |
0.1368 |
b0887 |
cydD |
-10.72 |
0.073556 |
183 -- 190 |
1 -- 8 |
glutathione/cysteine ABC transporter export permease/ATPase |
|
_____________182______191\n_____________|________|\n5'-AUU...AUAAC________UAAGC...UGA-3'\n______________UCACCUGC\n______________||||||||\n______________AGUGGACG\n3'-UUU...ACGUA________-5'\n_____________|_______|\n_____________9_______1\n |
184 -- 190 |
1 -- 7 |
-15.001 kcal/mol |
1.91816 kcal/mol |
2.36381 kcal/mol |
182 191@LB@ | |@LB@5'-AUU...AUAAC UAAGC...UGA-3'@LB@ UCACCUGC@LB@ ||||||||@LB@ AGUGGACG@LB@3'-UUU...ACGUA -5'@LB@ | |@LB@ 9 1@LB@@LB@@LB@Energy -10.72 kcal/mol@LB@Hybridization Energy -15.001 kcal/mol@LB@Unfolding Energy - mRNA 1.91816 kcal/mol@LB@Unfolding Energy - sRNA 2.36381 kcal/mol@LB@@LB@Position - mRNA 183 -- 190@LB@Position - sRNA 1 -- 8@LB@Position Seed - mRNA 184 -- 190@LB@Position Seed - sRNA 1 -- 7@LB@ |
| 116 |
0.003923 |
0.1189 |
b4515 |
cydX |
-11.57 |
0.044828 |
15 -- 31 |
37 -- 53 |
cytochrome d (bd-I) ubiquinol oxidase subunit X |
|
_____________14________________32\n_____________|_________________|\n5'-ACC...AACGC____CU___________AUGCA...GUC-3'\n______________AAGU__GACAAUGUGGG\n______________||||__||||||:|||:\n______________UUCA__CUGUUAUACCU\n3'-UUU...UUUCC____UU___________CGCGU...ACG-5'\n_____________|_________________|\n_____________54________________36\n |
25 -- 31 |
37 -- 43 |
-18.6761 kcal/mol |
3.6374 kcal/mol |
3.44536 kcal/mol |
14 32@LB@ | |@LB@5'-ACC...AACGC CU AUGCA...GUC-3'@LB@ AAGU GACAAUGUGGG@LB@ |||| ||||||:|||:@LB@ UUCA CUGUUAUACCU@LB@3'-UUU...UUUCC UU CGCGU...ACG-5'@LB@ | |@LB@ 54 36@LB@@LB@@LB@Energy -11.57 kcal/mol@LB@Hybridization Energy -18.6761 kcal/mol@LB@Unfolding Energy - mRNA 3.6374 kcal/mol@LB@Unfolding Energy - sRNA 3.44536 kcal/mol@LB@@LB@Position - mRNA 15 -- 31@LB@Position - sRNA 37 -- 53@LB@Position Seed - mRNA 25 -- 31@LB@Position Seed - sRNA 37 -- 43@LB@ |
| 119 |
0.004048 |
0.119 |
b3607 |
cysE |
-9.06 |
0.179616 |
191 -- 204 |
40 -- 54 |
serine acetyltransferase |
|
_____________190_____________205\n_____________|_______________|\n5'-CGG...CGUGU_______________CGUGU...CGA-3'\n______________GGAGUAAG_CAAUGU\n______________|:||||||_||||:|\n______________CUUCAUUC_GUUAUA\n3'-UUU...UUUUC________U______CCUCG...ACG-5'\n_____________|_______________|\n_____________55______________39\n |
192 -- 198 |
47 -- 53 |
-13.6491 kcal/mol |
2.75521 kcal/mol |
1.82942 kcal/mol |
190 205@LB@ | |@LB@5'-CGG...CGUGU CGUGU...CGA-3'@LB@ GGAGUAAG CAAUGU@LB@ |:|||||| ||||:|@LB@ CUUCAUUC GUUAUA@LB@3'-UUU...UUUUC U CCUCG...ACG-5'@LB@ | |@LB@ 55 39@LB@@LB@@LB@Energy -9.06 kcal/mol@LB@Hybridization Energy -13.6491 kcal/mol@LB@Unfolding Energy - mRNA 2.75521 kcal/mol@LB@Unfolding Energy - sRNA 1.82942 kcal/mol@LB@@LB@Position - mRNA 191 -- 204@LB@Position - sRNA 40 -- 54@LB@Position Seed - mRNA 192 -- 198@LB@Position Seed - sRNA 47 -- 53@LB@ |
| 81 |
0.001932 |
0.08273 |
b2763 |
cysI |
-12.36 |
0.027367 |
234 -- 285 |
1 -- 58 |
sulfite reductase beta subunit NAD(P)-binding heme-binding |
|
_____________233_________________________________________________________286\n_____________|___________________________________________________________|\n5'-GAA...UGGUC_______AACU_____ACGCC__________AA______A___AA_____AC_______GCGGC...CGG-3'\n______________GAAGGAA____GACAG_____GAGCGC_AUG______GC_UGA____GCA__UACCUGC\n______________:||||||____||||:_____||||||_|:|______||_|||____|||__:||||||\n______________UUUCCUU____CUGUU_____CUCGCG_UGC______CG_ACU____CGU__GUGGACG\n3'-UUU...AGUUU_______CAUU_____AUAC_______U___GGGUAG__A___GCAA___AA_______-5'\n_____________|__________________________________________________________|\n_____________59_________________________________________________________1\n |
279 -- 285 |
1 -- 7 |
-40.3147 kcal/mol |
11.0832 kcal/mol |
16.8724 kcal/mol |
233 286@LB@ | |@LB@5'-GAA...UGGUC AACU ACGCC AA A AA AC GCGGC...CGG-3'@LB@ GAAGGAA GACAG GAGCGC AUG GC UGA GCA UACCUGC@LB@ :|||||| ||||: |||||| |:| || ||| ||| :||||||@LB@ UUUCCUU CUGUU CUCGCG UGC CG ACU CGU GUGGACG@LB@3'-UUU...AGUUU CAUU AUAC U GGGUAG A GCAA AA -5'@LB@ | |@LB@ 59 1@LB@@LB@@LB@Energy -12.36 kcal/mol@LB@Hybridization Energy -40.3147 kcal/mol@LB@Unfolding Energy - mRNA 11.0832 kcal/mol@LB@Unfolding Energy - sRNA 16.8724 kcal/mol@LB@@LB@Position - mRNA 234 -- 285@LB@Position - sRNA 1 -- 58@LB@Position Seed - mRNA 279 -- 285@LB@Position Seed - sRNA 1 -- 7@LB@ |
| 9 |
1.504e-05 |
0.005627 |
b1189 |
dadA |
-11.44 |
0.048458 |
195 -- 226 |
48 -- 78 |
D-amino acid dehydrogenase |
|
_____________194_______________________________227\n_____________|_________________________________|\n5'-CCG...UCGGA__G_______G___UG____UACU_________UGUGG...CGG-3'\n______________GU_GCUAUGC_AGU___UCA____GGGAAGUGG\n______________||_|||||||_|||___|||____:||||||::\n______________CA_CGAUACG_UCA___AGU____UCCUUCAUU\n3'-UUU...GUUAA______________UUA___UUUU_________CUGUU...ACG-5'\n_____________|_________________________________|\n_____________79________________________________47\n |
220 -- 226 |
48 -- 54 |
-26.7579 kcal/mol |
10.7545 kcal/mol |
4.57065 kcal/mol |
194 227@LB@ | |@LB@5'-CCG...UCGGA G G UG UACU UGUGG...CGG-3'@LB@ GU GCUAUGC AGU UCA GGGAAGUGG@LB@ || ||||||| ||| ||| :||||||::@LB@ CA CGAUACG UCA AGU UCCUUCAUU@LB@3'-UUU...GUUAA UUA UUUU CUGUU...ACG-5'@LB@ | |@LB@ 79 47@LB@@LB@@LB@Energy -11.44 kcal/mol@LB@Hybridization Energy -26.7579 kcal/mol@LB@Unfolding Energy - mRNA 10.7545 kcal/mol@LB@Unfolding Energy - sRNA 4.57065 kcal/mol@LB@@LB@Position - mRNA 195 -- 226@LB@Position - sRNA 48 -- 78@LB@Position Seed - mRNA 220 -- 226@LB@Position Seed - sRNA 48 -- 54@LB@ |
| 138 |
0.00525 |
0.1336 |
b0031 |
dapB |
-12.01 |
0.034078 |
16 -- 66 |
61 -- 114 |
dihydrodipicolinate reductase |
|
_____________15____________________________________________________________67\n_____________|_____________________________________________________________|\n5'-GUG...GAGGU__________________________ACCU____CAUGUU_______________C_____UCGAC...UGG-3'\n______________GCUGGCUC________UGGCGUCGUA____GUCA______AUUG_GC_AUGCAGU_AUUCA\n______________||:|:|||________:|||||||||____:|||______||||_||_|||||||_|||||\n______________CGGCUGAG________GCCGCAGCAU____UAGU______UAAC_CG_UACGUCA_UAAGU\n___3'-UUUUUUUU________UAGUUUCA__________GCU_______________A__A_______U_____UUUUU...ACG-5'\n_____________|_____________________________________________________________|\n_____________115___________________________________________________________60\n |
54 -- 60 |
67 -- 73 |
-49.0979 kcal/mol |
18.4253 kcal/mol |
18.6631 kcal/mol |
15 67@LB@ | |@LB@5'-GUG...GAGGU ACCU CAUGUU C UCGAC...UGG-3'@LB@ GCUGGCUC UGGCGUCGUA GUCA AUUG GC AUGCAGU AUUCA@LB@ ||:|:||| :||||||||| :||| |||| || ||||||| |||||@LB@ CGGCUGAG GCCGCAGCAU UAGU UAAC CG UACGUCA UAAGU@LB@ 3'-UUUUUUUU UAGUUUCA GCU A A U UUUUU...ACG-5'@LB@ | |@LB@ 115 60@LB@@LB@@LB@Energy -12.01 kcal/mol@LB@Hybridization Energy -49.0979 kcal/mol@LB@Unfolding Energy - mRNA 18.4253 kcal/mol@LB@Unfolding Energy - sRNA 18.6631 kcal/mol@LB@@LB@Position - mRNA 16 -- 66@LB@Position - sRNA 61 -- 114@LB@Position Seed - mRNA 54 -- 60@LB@Position Seed - sRNA 67 -- 73@LB@ |
| 58 |
0.0009751 |
0.05816 |
b3809 |
dapF |
-9.70 |
0.129467 |
46 -- 52 |
1 -- 7 |
diaminopimelate epimerase |
|
_____________45______53\n_____________|_______|\n5'-UCU...UUUCC_______AGAUA...UGG-3'\n______________CGCCUGC\n______________|:|||||\n______________GUGGACG\n3'-UUU...CGUAA_______-5'\n_____________|______|\n_____________8______1\n |
46 -- 52 |
1 -- 7 |
-13.4276 kcal/mol |
1.39772 kcal/mol |
2.34039 kcal/mol |
45 53@LB@ | |@LB@5'-UCU...UUUCC AGAUA...UGG-3'@LB@ CGCCUGC@LB@ |:|||||@LB@ GUGGACG@LB@3'-UUU...CGUAA -5'@LB@ | |@LB@ 8 1@LB@@LB@@LB@Energy -9.70 kcal/mol@LB@Hybridization Energy -13.4276 kcal/mol@LB@Unfolding Energy - mRNA 1.39772 kcal/mol@LB@Unfolding Energy - sRNA 2.34039 kcal/mol@LB@@LB@Position - mRNA 46 -- 52@LB@Position - sRNA 1 -- 7@LB@Position Seed - mRNA 46 -- 52@LB@Position Seed - sRNA 1 -- 7@LB@ |
| 34 |
0.0002646 |
0.02697 |
b1206 |
dauA |
-13.80 |
0.010599 |
120 -- 158 |
1 -- 34 |
C4-dicarboxylic acid transporter |
|
_____________119_____________________________________159\n_____________|_______________________________________|\n5'-CCU...UGUCU_____A____U____A____CUA___CUCC_________CAUUU...UGA-3'\n______________GUAAU_UCCA_UUGU_UGAC___UGC____UUCACCUGC\n______________|:||:_:|||_|:|:_||||___|||____|||||||||\n______________CGUUG_GGGU_AGCG_ACUG___ACG____AAGUGGACG\n3'-UUU...CCUCG_____C_________A____CA____U____________-5'\n_____________|______________________________________|\n_____________35_____________________________________1\n |
152 -- 158 |
1 -- 7 |
-32.3364 kcal/mol |
3.2737 kcal/mol |
15.2664 kcal/mol |
119 159@LB@ | |@LB@5'-CCU...UGUCU A U A CUA CUCC CAUUU...UGA-3'@LB@ GUAAU UCCA UUGU UGAC UGC UUCACCUGC@LB@ |:||: :||| |:|: |||| ||| |||||||||@LB@ CGUUG GGGU AGCG ACUG ACG AAGUGGACG@LB@3'-UUU...CCUCG C A CA U -5'@LB@ | |@LB@ 35 1@LB@@LB@@LB@Energy -13.80 kcal/mol@LB@Hybridization Energy -32.3364 kcal/mol@LB@Unfolding Energy - mRNA 3.2737 kcal/mol@LB@Unfolding Energy - sRNA 15.2664 kcal/mol@LB@@LB@Position - mRNA 120 -- 158@LB@Position - sRNA 1 -- 34@LB@Position Seed - mRNA 152 -- 158@LB@Position Seed - sRNA 1 -- 7@LB@ |
