| 20 |
4.953e-05 |
0.008725 |
b1841 |
yobA |
-18.58 |
0.000237 |
158 -- 228 |
20 -- 76 |
CopC family protein |
|
_____________157_______________________________________________________________________229\n_____________|_________________________________________________________________________|\n5'-GCC...ACAAG_______UCUGUAAAAA___U___AC_________U_____________CUUCAAC____C__U___U_____ACGCG...AGU-3'\n______________GUUAUGC__________AGU_AUU__AAAAAGGAA___AGAUAAUAUGG_______UGCA_GC_CCC_UCGCU\n______________|:|||||__________|||_|||__|||||||||___|||:|||||||_______:|||_:|_|||_|||||\n______________CGAUACG__________UCA_UAA__UUUUUCCUU___UCUGUUAUACC_______GCGU_UG_GGG_AGCGA\n3'-UUU...UAACA____________________U___GU_________CAU___________UC____________C___U_____ACUGC...ACG-5'\n_____________|_________________________________________________________________________|\n_____________77________________________________________________________________________19\n |
198 -- 204 |
38 -- 44 |
-46.9503 kcal/mol |
10.9442 kcal/mol |
17.4278 kcal/mol |
157 229@LB@ | |@LB@5'-GCC...ACAAG UCUGUAAAAA U AC U CUUCAAC C U U ACGCG...AGU-3'@LB@ GUUAUGC AGU AUU AAAAAGGAA AGAUAAUAUGG UGCA GC CCC UCGCU@LB@ |:||||| ||| ||| ||||||||| |||:||||||| :||| :| ||| |||||@LB@ CGAUACG UCA UAA UUUUUCCUU UCUGUUAUACC GCGU UG GGG AGCGA@LB@3'-UUU...UAACA U GU CAU UC C U ACUGC...ACG-5'@LB@ | |@LB@ 77 19@LB@@LB@@LB@Energy -18.58 kcal/mol@LB@Hybridization Energy -46.9503 kcal/mol@LB@Unfolding Energy - mRNA 10.9442 kcal/mol@LB@Unfolding Energy - sRNA 17.4278 kcal/mol@LB@@LB@Position - mRNA 158 -- 228@LB@Position - sRNA 20 -- 76@LB@Position Seed - mRNA 198 -- 204@LB@Position Seed - sRNA 38 -- 44@LB@ |
| 144 |
0.005571 |
0.1363 |
b1843 |
yobB |
-15.05 |
0.004361 |
174 -- 196 |
50 -- 72 |
C-N hydrolase family protein |
|
_____________173_____________________197\n_____________|_______________________|\n5'-CCU...UAAUU______C____U___________CAUUA...CCA-3'\n______________UGCAGU_AUUU_GAAAAGGAAGU\n______________||||||_|||:_:||||||||||\n______________ACGUCA_UAAG_UUUUUCCUUCA\n3'-UUU...ACGAU______U____U___________UUCUG...ACG-5'\n_____________|_______________________|\n_____________73______________________49\n |
190 -- 196 |
50 -- 56 |
-24.355 kcal/mol |
5.29079 kcal/mol |
4.01539 kcal/mol |
173 197@LB@ | |@LB@5'-CCU...UAAUU C U CAUUA...CCA-3'@LB@ UGCAGU AUUU GAAAAGGAAGU@LB@ |||||| |||: :||||||||||@LB@ ACGUCA UAAG UUUUUCCUUCA@LB@3'-UUU...ACGAU U U UUCUG...ACG-5'@LB@ | |@LB@ 73 49@LB@@LB@@LB@Energy -15.05 kcal/mol@LB@Hybridization Energy -24.355 kcal/mol@LB@Unfolding Energy - mRNA 5.29079 kcal/mol@LB@Unfolding Energy - sRNA 4.01539 kcal/mol@LB@@LB@Position - mRNA 174 -- 196@LB@Position - sRNA 50 -- 72@LB@Position Seed - mRNA 190 -- 196@LB@Position Seed - sRNA 50 -- 56@LB@ |
| 197 |
0.008895 |
0.1548 |
b2844 |
yqeF |
-5.48 |
0.714940 |
222 -- 246 |
20 -- 39 |
short chain acyltransferase |
|
_____________221_______________________247\n_____________|_________________________|\n5'-CCA...UUGUC_______UACG___A_______G__GCUUU...UCG-3'\n______________GGGGCGU____GAC_CCUAUCG_CU\n______________||:|||:____:||_||:||||_||\n______________CCUCGCG____UUG_GGGUAGC_GA\n3'-UUU...UUAUA______________C__________ACUGC...ACG-5'\n_____________|_________________________|\n_____________40________________________19\n |
237 -- 243 |
22 -- 28 |
-25.7666 kcal/mol |
8.11246 kcal/mol |
12.1811 kcal/mol |
221 247@LB@ | |@LB@5'-CCA...UUGUC UACG A G GCUUU...UCG-3'@LB@ GGGGCGU GAC CCUAUCG CU@LB@ ||:|||: :|| ||:|||| ||@LB@ CCUCGCG UUG GGGUAGC GA@LB@3'-UUU...UUAUA C ACUGC...ACG-5'@LB@ | |@LB@ 40 19@LB@@LB@@LB@Energy -5.48 kcal/mol@LB@Hybridization Energy -25.7666 kcal/mol@LB@Unfolding Energy - mRNA 8.11246 kcal/mol@LB@Unfolding Energy - sRNA 12.1811 kcal/mol@LB@@LB@Position - mRNA 222 -- 246@LB@Position - sRNA 20 -- 39@LB@Position Seed - mRNA 237 -- 243@LB@Position Seed - sRNA 22 -- 28@LB@ |
| 128 |
0.004569 |
0.1258 |
b3033 |
yqiB |
-9.35 |
0.155553 |
90 -- 130 |
43 -- 87 |
DUF1249 protein YqiB |
|
_____________89_____________________________________________131\n_____________|______________________________________________|\n5'-UGG...GCCGG_____________AUAC______GUA__________AAAUC_____CGCAG...GCG-3'\n______________GAA_CAG____GC____CAGUGG___GAAGAGGGGA_____GACAA\n______________|||_||:____||____||||::___:||:|:||:|_____|||||\n______________CUU_GUU____CG____GUCAUU___UUUUUUCCUU_____CUGUU\n3'-UUU...GCAUG___A___AACA__AUAC______AAG__________CAUU______AUACC...ACG-5'\n_____________|______________________________________________|\n_____________88_____________________________________________42\n |
114 -- 120 |
52 -- 58 |
-22.1335 kcal/mol |
7.07839 kcal/mol |
5.71172 kcal/mol |
89 131@LB@ | |@LB@5'-UGG...GCCGG AUAC GUA AAAUC CGCAG...GCG-3'@LB@ GAA CAG GC CAGUGG GAAGAGGGGA GACAA@LB@ ||| ||: || ||||:: :||:|:||:| |||||@LB@ CUU GUU CG GUCAUU UUUUUUCCUU CUGUU@LB@3'-UUU...GCAUG A AACA AUAC AAG CAUU AUACC...ACG-5'@LB@ | |@LB@ 88 42@LB@@LB@@LB@Energy -9.35 kcal/mol@LB@Hybridization Energy -22.1335 kcal/mol@LB@Unfolding Energy - mRNA 7.07839 kcal/mol@LB@Unfolding Energy - sRNA 5.71172 kcal/mol@LB@@LB@Position - mRNA 90 -- 130@LB@Position - sRNA 43 -- 87@LB@Position Seed - mRNA 114 -- 120@LB@Position Seed - sRNA 52 -- 58@LB@ |
| 181 |
0.007702 |
0.1499 |
b3145 |
yraK |
-8.82 |
0.202558 |
266 -- 280 |
35 -- 49 |
putative fimbrial-like adhesin protein |
b0533 b0941 |
_____________265_____________281\n_____________|_______________|\n5'-CGA...UCCUC____G__________CGACA...CGA-3'\n______________AGGA_GGUGUGGAGC\n______________|:||_::|:||||||\n______________UUCU_UUAUACCUCG\n3'-UUU...CUUCA____G__________CGUUG...ACG-5'\n_____________|_______________|\n_____________50______________34\n |
274 -- 280 |
35 -- 41 |
-19.5909 kcal/mol |
7.00879 kcal/mol |
3.74396 kcal/mol |
265 281@LB@ | |@LB@5'-CGA...UCCUC G CGACA...CGA-3'@LB@ AGGA GGUGUGGAGC@LB@ |:|| ::|:||||||@LB@ UUCU UUAUACCUCG@LB@3'-UUU...CUUCA G CGUUG...ACG-5'@LB@ | |@LB@ 50 34@LB@@LB@@LB@Energy -8.82 kcal/mol@LB@Hybridization Energy -19.5909 kcal/mol@LB@Unfolding Energy - mRNA 7.00879 kcal/mol@LB@Unfolding Energy - sRNA 3.74396 kcal/mol@LB@@LB@Position - mRNA 266 -- 280@LB@Position - sRNA 35 -- 49@LB@Position Seed - mRNA 274 -- 280@LB@Position Seed - sRNA 35 -- 41@LB@ |
| 26 |
0.000123 |
0.01616 |
b3280 |
yrdB |
-11.55 |
0.045184 |
198 -- 244 |
43 -- 92 |
DUF1488 family protein |
|
_____________197__________________________________________________245\n_____________|____________________________________________________|\n5'-CCA...UUGUC__CG______________C__C____UUC_____C_____AG__________GAAUA...GCG-3'\n______________CG__UGAAUCAG____GC_AU_CAGU____CGGA_AGGGA__AGUGGGACGA\n______________||__:||||||:____||_||_||||____|::|_|:|||__|||::|||:|\n______________GC__GCUUAGUU____CG_UA_GUCA____GUUU_UUCCU__UCAUUCUGUU\n3'-UUU...CCGCA__AU________AACA__A__C____UUAA____U_________________AUACC...ACG-5'\n_____________|____________________________________________________|\n_____________93___________________________________________________42\n |
238 -- 244 |
43 -- 49 |
-31.3697 kcal/mol |
13.9577 kcal/mol |
5.86211 kcal/mol |
197 245@LB@ | |@LB@5'-CCA...UUGUC CG C C UUC C AG GAAUA...GCG-3'@LB@ CG UGAAUCAG GC AU CAGU CGGA AGGGA AGUGGGACGA@LB@ || :||||||: || || |||| |::| |:||| |||::|||:|@LB@ GC GCUUAGUU CG UA GUCA GUUU UUCCU UCAUUCUGUU@LB@3'-UUU...CCGCA AU AACA A C UUAA U AUACC...ACG-5'@LB@ | |@LB@ 93 42@LB@@LB@@LB@Energy -11.55 kcal/mol@LB@Hybridization Energy -31.3697 kcal/mol@LB@Unfolding Energy - mRNA 13.9577 kcal/mol@LB@Unfolding Energy - sRNA 5.86211 kcal/mol@LB@@LB@Position - mRNA 198 -- 244@LB@Position - sRNA 43 -- 92@LB@Position Seed - mRNA 238 -- 244@LB@Position Seed - sRNA 43 -- 49@LB@ |
| 31 |
0.0001757 |
0.01997 |
b4222 |
ytfP |
-8.86 |
0.198985 |
202 -- 224 |
67 -- 90 |
GGCT-like protein |
|
_____________201_______________________225\n_____________|_________________________|\n5'-ACC...AGCAA_______AU_________CG_____UUACG...ACC-3'\n______________UGCGAAU___UUGU_CUA__GCAGU\n______________|:|||||___||||_|||__|||||\n______________AUGCUUA___AACA_GAU__CGUCA\n3'-UUU...GCAGC_______GUU____C___A______UUAAG...ACG-5'\n_____________|_________________________|\n_____________91________________________66\n |
202 -- 208 |
84 -- 90 |
-18.173 kcal/mol |
4.78992 kcal/mol |
4.5307 kcal/mol |
201 225@LB@ | |@LB@5'-ACC...AGCAA AU CG UUACG...ACC-3'@LB@ UGCGAAU UUGU CUA GCAGU@LB@ |:||||| |||| ||| |||||@LB@ AUGCUUA AACA GAU CGUCA@LB@3'-UUU...GCAGC GUU C A UUAAG...ACG-5'@LB@ | |@LB@ 91 66@LB@@LB@@LB@Energy -8.86 kcal/mol@LB@Hybridization Energy -18.173 kcal/mol@LB@Unfolding Energy - mRNA 4.78992 kcal/mol@LB@Unfolding Energy - sRNA 4.5307 kcal/mol@LB@@LB@Position - mRNA 202 -- 224@LB@Position - sRNA 67 -- 90@LB@Position Seed - mRNA 202 -- 208@LB@Position Seed - sRNA 84 -- 90@LB@ |
| 109 |
0.003466 |
0.1114 |
b4485 |
ytfR |
-10.51 |
0.083206 |
29 -- 56 |
35 -- 61 |
putative sugar ABC transporter ATPase |
|
_____________28____________________________57\n_____________|_____________________________|\n5'-CCU...AAGAA___UU__A_________AA__________AUUGA...GCC-3'\n______________GAA__AG_GAAG_AAGA__AAUAUGGGGU\n______________:||__||_||||_||||__|||||||:|:\n______________UUU__UC_CUUC_UUCU__UUAUACCUCG\n3'-UUU...UUAAG___UU_______A____G___________CGUUG...ACG-5'\n_____________|_____________________________|\n_____________62____________________________34\n |
50 -- 56 |
35 -- 41 |
-20.6661 kcal/mol |
5.51365 kcal/mol |
4.61294 kcal/mol |
28 57@LB@ | |@LB@5'-CCU...AAGAA UU A AA AUUGA...GCC-3'@LB@ GAA AG GAAG AAGA AAUAUGGGGU@LB@ :|| || |||| |||| |||||||:|:@LB@ UUU UC CUUC UUCU UUAUACCUCG@LB@3'-UUU...UUAAG UU A G CGUUG...ACG-5'@LB@ | |@LB@ 62 34@LB@@LB@@LB@Energy -10.51 kcal/mol@LB@Hybridization Energy -20.6661 kcal/mol@LB@Unfolding Energy - mRNA 5.51365 kcal/mol@LB@Unfolding Energy - sRNA 4.61294 kcal/mol@LB@@LB@Position - mRNA 29 -- 56@LB@Position - sRNA 35 -- 61@LB@Position Seed - mRNA 50 -- 56@LB@Position Seed - sRNA 35 -- 41@LB@ |
| 47 |
0.0004845 |
0.03632 |
b0102 |
zapD |
-14.30 |
0.007459 |
100 -- 148 |
1 -- 47 |
FtsZ stabilizer |
|
_____________99____________________________________________________149\n_____________|_____________________________________________________|\n5'-ACC...UCAUU_______AC_______CCGG___________AUCG________C_________ACGCA...CCA-3'\n______________GAUAAUA___GGCGCA____AUG_CUAUCGC____GAUGUUGC___CGCCUGC\n______________||:||||___:|||||____|:|_|:|||||____||:|||||___|:|||||\n______________CUGUUAU___UCGCGU____UGC_GGUAGCG____CUGCAACG___GUGGACG\n3'-UUU...UCAUU_______ACC_____________G_______AA__________UAA_______-5'\n_____________|____________________________________________________|\n_____________48___________________________________________________1\n |
142 -- 148 |
1 -- 7 |
-50.0565 kcal/mol |
18.9794 kcal/mol |
16.7767 kcal/mol |
99 149@LB@ | |@LB@5'-ACC...UCAUU AC CCGG AUCG C ACGCA...CCA-3'@LB@ GAUAAUA GGCGCA AUG CUAUCGC GAUGUUGC CGCCUGC@LB@ ||:|||| :||||| |:| |:||||| ||:||||| |:|||||@LB@ CUGUUAU UCGCGU UGC GGUAGCG CUGCAACG GUGGACG@LB@3'-UUU...UCAUU ACC G AA UAA -5'@LB@ | |@LB@ 48 1@LB@@LB@@LB@Energy -14.30 kcal/mol@LB@Hybridization Energy -50.0565 kcal/mol@LB@Unfolding Energy - mRNA 18.9794 kcal/mol@LB@Unfolding Energy - sRNA 16.7767 kcal/mol@LB@@LB@Position - mRNA 100 -- 148@LB@Position - sRNA 1 -- 47@LB@Position Seed - mRNA 142 -- 148@LB@Position Seed - sRNA 1 -- 7@LB@ |
| 177 |
0.007289 |
0.1451 |
b4002 |
zraP |
-14.65 |
0.005839 |
172 -- 192 |
36 -- 54 |
Zn-dependent periplasmic chaperone |
|
_____________171___________________193\n_____________|_____________________|\n5'-AAU...UACCC____________CCAC_____GAUUA...GGC-3'\n______________GAAGUAAGACAA____UGGAG\n______________||||||||||||____|||||\n______________CUUCAUUCUGUU____ACCUC\n3'-UUU...UUUUC____________AU_______GCGUU...ACG-5'\n_____________|_____________________|\n_____________55____________________35\n |
177 -- 183 |
43 -- 49 |
-21.9873 kcal/mol |
3.76916 kcal/mol |
3.53499 kcal/mol |
171 193@LB@ | |@LB@5'-AAU...UACCC CCAC GAUUA...GGC-3'@LB@ GAAGUAAGACAA UGGAG@LB@ |||||||||||| |||||@LB@ CUUCAUUCUGUU ACCUC@LB@3'-UUU...UUUUC AU GCGUU...ACG-5'@LB@ | |@LB@ 55 35@LB@@LB@@LB@Energy -14.65 kcal/mol@LB@Hybridization Energy -21.9873 kcal/mol@LB@Unfolding Energy - mRNA 3.76916 kcal/mol@LB@Unfolding Energy - sRNA 3.53499 kcal/mol@LB@@LB@Position - mRNA 172 -- 192@LB@Position - sRNA 36 -- 54@LB@Position Seed - mRNA 177 -- 183@LB@Position Seed - sRNA 43 -- 49@LB@ |
