| 122 |
0.01077 |
0.2883 |
bsu18910 |
rapK |
-11.72 |
0.116857 |
189 -- 197 |
28 -- 36 |
response regulator aspartate phosphatase K |
|
_____________188_______198\n_____________|_________|\n5'-UAU...CAGAA_________UAAAU...CAG-3'\n______________AGAGGGGUU\n______________|||||||||\n______________UCUCCCCAA\n3'-UUU...GACUA_________CCCCU...AUA-5'\n_____________|_________|\n_____________37________27\n |
191 -- 197 |
28 -- 34 |
-15.633 kcal/mol |
3.77416 kcal/mol |
0.134381 kcal/mol |
188 198@LB@ | |@LB@5'-UAU...CAGAA UAAAU...CAG-3'@LB@ AGAGGGGUU@LB@ |||||||||@LB@ UCUCCCCAA@LB@3'-UUU...GACUA CCCCU...AUA-5'@LB@ | |@LB@ 37 27@LB@@LB@@LB@Energy -11.72 kcal/mol@LB@Hybridization Energy -15.633 kcal/mol@LB@Unfolding Energy - mRNA 3.77416 kcal/mol@LB@Unfolding Energy - sRNA 0.134381 kcal/mol@LB@@LB@Position - mRNA 189 -- 197@LB@Position - sRNA 28 -- 36@LB@Position Seed - mRNA 191 -- 197@LB@Position Seed - sRNA 28 -- 34@LB@ |
| 24 |
0.0005065 |
0.06638 |
bsu23150 |
resA |
-19.55 |
0.002768 |
169 -- 191 |
24 -- 44 |
thiol-disulfide oxidoreductase ResA |
|
_____________168_____________________192\n_____________|_______________________|\n5'-GUU...GAAUG______CA________AAG____CAGUG...AAG-3'\n______________GAUCUG__AUAGGGGG___GGGG\n______________||||||__||||:|||___||||\n______________CUAGAC__UAUCUCCC___CCCC\n3'-UUU...UAGAA________________CAA____UUGUC...AUA-5'\n_____________|_______________________|\n_____________45______________________23\n |
178 -- 184 |
31 -- 37 |
-27.4404 kcal/mol |
6.91177 kcal/mol |
0.977523 kcal/mol |
168 192@LB@ | |@LB@5'-GUU...GAAUG CA AAG CAGUG...AAG-3'@LB@ GAUCUG AUAGGGGG GGGG@LB@ |||||| ||||:||| ||||@LB@ CUAGAC UAUCUCCC CCCC@LB@3'-UUU...UAGAA CAA UUGUC...AUA-5'@LB@ | |@LB@ 45 23@LB@@LB@@LB@Energy -19.55 kcal/mol@LB@Hybridization Energy -27.4404 kcal/mol@LB@Unfolding Energy - mRNA 6.91177 kcal/mol@LB@Unfolding Energy - sRNA 0.977523 kcal/mol@LB@@LB@Position - mRNA 169 -- 191@LB@Position - sRNA 24 -- 44@LB@Position Seed - mRNA 178 -- 184@LB@Position Seed - sRNA 31 -- 37@LB@ |
| 111 |
0.009313 |
0.2778 |
bsu16780 |
rnjB |
-13.26 |
0.064171 |
155 -- 177 |
29 -- 51 |
ribonuclease J 2 |
|
_____________154_____________________178\n_____________|_______________________|\n5'-GCA...UAAUA___ACAAGUGA_______C____AUGAG...UAU-3'\n______________GGA________UGAUGGA_GGGU\n______________|||________||||:||_||||\n______________CCU________ACUAUCU_CCCA\n3'-UUU...AAAAG___AGAACUAG_______C____ACCCC...AUA-5'\n_____________|_______________________|\n_____________52______________________28\n |
166 -- 172 |
34 -- 40 |
-18.6769 kcal/mol |
4.44629 kcal/mol |
0.974539 kcal/mol |
154 178@LB@ | |@LB@5'-GCA...UAAUA ACAAGUGA C AUGAG...UAU-3'@LB@ GGA UGAUGGA GGGU@LB@ ||| ||||:|| ||||@LB@ CCU ACUAUCU CCCA@LB@3'-UUU...AAAAG AGAACUAG C ACCCC...AUA-5'@LB@ | |@LB@ 52 28@LB@@LB@@LB@Energy -13.26 kcal/mol@LB@Hybridization Energy -18.6769 kcal/mol@LB@Unfolding Energy - mRNA 4.44629 kcal/mol@LB@Unfolding Energy - sRNA 0.974539 kcal/mol@LB@@LB@Position - mRNA 155 -- 177@LB@Position - sRNA 29 -- 51@LB@Position Seed - mRNA 166 -- 172@LB@Position Seed - sRNA 34 -- 40@LB@ |
| 191 |
0.01913 |
0.3269 |
bsu37760 |
rocC |
-14.43 |
0.038902 |
267 -- 280 |
26 -- 36 |
amino acid permease RocC |
|
_____________266____________281\n_____________|______________|\n5'-CCG...CUUUG________GAU___CACUG...GCU-3'\n______________GGAGGGGU___UGG\n______________:|||||||___|||\n______________UCUCCCCA___ACC\n3'-UUU...GACUA______________CCUUG...AUA-5'\n_____________|______________|\n_____________37_____________25\n |
268 -- 274 |
29 -- 35 |
-16.8756 kcal/mol |
2.30826 kcal/mol |
0.135623 kcal/mol |
266 281@LB@ | |@LB@5'-CCG...CUUUG GAU CACUG...GCU-3'@LB@ GGAGGGGU UGG@LB@ :||||||| |||@LB@ UCUCCCCA ACC@LB@3'-UUU...GACUA CCUUG...AUA-5'@LB@ | |@LB@ 37 25@LB@@LB@@LB@Energy -14.43 kcal/mol@LB@Hybridization Energy -16.8756 kcal/mol@LB@Unfolding Energy - mRNA 2.30826 kcal/mol@LB@Unfolding Energy - sRNA 0.135623 kcal/mol@LB@@LB@Position - mRNA 267 -- 280@LB@Position - sRNA 26 -- 36@LB@Position Seed - mRNA 268 -- 274@LB@Position Seed - sRNA 29 -- 35@LB@ |
| 76 |
0.005654 |
0.2441 |
bsu14240 |
rok |
-14.05 |
0.045854 |
178 -- 222 |
9 -- 42 |
repressor rok |
|
_____________177______________________________________________223\n_____________|________________________________________________|\n5'-UUA...UUAAU______________ACAU__A_____GUUUAAUGAA____________UGCGC...UAU-3'\n______________UUUGAUAG_GGGGU____UG_GGAAU__________AGAGA__AGCUU\n______________|:||||||_|||||____||_||||:__________|||||__|||||\n______________AGACUAUC_CCCCA____AC_CCUUG__________UCUCU__UCGAA\n3'-UUU...GAACU________U___________C____________________CA_____GAGAGAUA-5'\n_____________|________________________________________________|\n_____________43_______________________________________________8\n |
179 -- 185 |
35 -- 41 |
-31.6296 kcal/mol |
7.67652 kcal/mol |
9.89852 kcal/mol |
177 223@LB@ | |@LB@5'-UUA...UUAAU ACAU A GUUUAAUGAA UGCGC...UAU-3'@LB@ UUUGAUAG GGGGU UG GGAAU AGAGA AGCUU@LB@ |:|||||| ||||| || ||||: ||||| |||||@LB@ AGACUAUC CCCCA AC CCUUG UCUCU UCGAA@LB@3'-UUU...GAACU U C CA GAGAGAUA-5'@LB@ | |@LB@ 43 8@LB@@LB@@LB@Energy -14.05 kcal/mol@LB@Hybridization Energy -31.6296 kcal/mol@LB@Unfolding Energy - mRNA 7.67652 kcal/mol@LB@Unfolding Energy - sRNA 9.89852 kcal/mol@LB@@LB@Position - mRNA 178 -- 222@LB@Position - sRNA 9 -- 42@LB@Position Seed - mRNA 179 -- 185@LB@Position Seed - sRNA 35 -- 41@LB@ |
| 197 |
0.0195 |
0.3269 |
bsu04670 |
rsbRA |
-10.67 |
0.170227 |
19 -- 37 |
34 -- 52 |
RsbT co-antagonist protein RsbRA |
|
_____________18__________________38\n_____________|___________________|\n5'-CGG...UCAUC_____GA___AA_______UAAGG...AAU-3'\n______________UGGAU__UGA__UGAUGGA\n______________:||||__|||__||||:||\n______________GCCUA__ACU__ACUAUCU\n3'-UUU...AAAAA_____GA___AG_______CCCCA...AUA-5'\n_____________|___________________|\n_____________53__________________33\n |
31 -- 37 |
34 -- 40 |
-17.5102 kcal/mol |
5.86002 kcal/mol |
0.976339 kcal/mol |
18 38@LB@ | |@LB@5'-CGG...UCAUC GA AA UAAGG...AAU-3'@LB@ UGGAU UGA UGAUGGA@LB@ :|||| ||| ||||:||@LB@ GCCUA ACU ACUAUCU@LB@3'-UUU...AAAAA GA AG CCCCA...AUA-5'@LB@ | |@LB@ 53 33@LB@@LB@@LB@Energy -10.67 kcal/mol@LB@Hybridization Energy -17.5102 kcal/mol@LB@Unfolding Energy - mRNA 5.86002 kcal/mol@LB@Unfolding Energy - sRNA 0.976339 kcal/mol@LB@@LB@Position - mRNA 19 -- 37@LB@Position - sRNA 34 -- 52@LB@Position Seed - mRNA 31 -- 37@LB@Position Seed - sRNA 34 -- 40@LB@ |
| 112 |
0.009326 |
0.2778 |
bsu13200 |
rsbRB |
-15.32 |
0.026068 |
265 -- 282 |
32 -- 51 |
RsbT co-antagonist protein RsbRB |
bsu19450 |
_____________264__________________283\n_____________|____________________|\n5'-CUU...GGAAU_________AAC________AAAGU...CGC-3'\n______________GGAU__UGA___GAUGGAGG\n______________||||__|||___|||:||||\n______________CCUA__ACU___CUAUCUCC\n3'-UUU...AAAAG____GA___AGA________CCAAC...AUA-5'\n_____________|____________________|\n_____________52___________________31\n |
276 -- 282 |
32 -- 38 |
-18.0013 kcal/mol |
1.71479 kcal/mol |
0.97021 kcal/mol |
264 283@LB@ | |@LB@5'-CUU...GGAAU AAC AAAGU...CGC-3'@LB@ GGAU UGA GAUGGAGG@LB@ |||| ||| |||:||||@LB@ CCUA ACU CUAUCUCC@LB@3'-UUU...AAAAG GA AGA CCAAC...AUA-5'@LB@ | |@LB@ 52 31@LB@@LB@@LB@Energy -15.32 kcal/mol@LB@Hybridization Energy -18.0013 kcal/mol@LB@Unfolding Energy - mRNA 1.71479 kcal/mol@LB@Unfolding Energy - sRNA 0.97021 kcal/mol@LB@@LB@Position - mRNA 265 -- 282@LB@Position - sRNA 32 -- 51@LB@Position Seed - mRNA 276 -- 282@LB@Position Seed - sRNA 32 -- 38@LB@ |
| 20 |
0.0003727 |
0.06216 |
bsu04690 |
rsbT |
-12.89 |
0.074349 |
161 -- 193 |
22 -- 51 |
serine/threonine protein kinase |
|
_____________160________________________________194\n_____________|__________________________________|\n5'-UUG...GAGCA__GG_____GACAU______C___AA________AUAGC...CGG-3'\n______________GG__CUUGA_____UGA_AG_GGG__UUGGGGGA\n______________||__|||||_____|||_||_|||__||||||:|\n______________CC__GAACU_____ACU_UC_CCC__AACCCCUU\n3'-UUU...AAAAG__UA_____AG______A__U___C_________GUCUC...AUA-5'\n_____________|__________________________________|\n_____________52_________________________________21\n |
187 -- 193 |
22 -- 28 |
-26.679 kcal/mol |
11.9064 kcal/mol |
1.87888 kcal/mol |
160 194@LB@ | |@LB@5'-UUG...GAGCA GG GACAU C AA AUAGC...CGG-3'@LB@ GG CUUGA UGA AG GGG UUGGGGGA@LB@ || ||||| ||| || ||| ||||||:|@LB@ CC GAACU ACU UC CCC AACCCCUU@LB@3'-UUU...AAAAG UA AG A U C GUCUC...AUA-5'@LB@ | |@LB@ 52 21@LB@@LB@@LB@Energy -12.89 kcal/mol@LB@Hybridization Energy -26.679 kcal/mol@LB@Unfolding Energy - mRNA 11.9064 kcal/mol@LB@Unfolding Energy - sRNA 1.87888 kcal/mol@LB@@LB@Position - mRNA 161 -- 193@LB@Position - sRNA 22 -- 51@LB@Position Seed - mRNA 187 -- 193@LB@Position Seed - sRNA 22 -- 28@LB@ |
| 161 |
0.01452 |
0.3008 |
bsu04700 |
rsbU |
-15.42 |
0.024826 |
142 -- 163 |
16 -- 38 |
phosphoserine phosphatase RsbU |
|
_____________141_____________________164\n_____________|_______________________|\n5'-CUG...AUUCC____C____GAA___________UACAA...UCA-3'\n______________GUAG_GGGG____GGAACAGAGA\n______________:|||_||||____||||||||||\n______________UAUC_CCCC____CCUUGUCUCU\n3'-UUU...UAGAC____U____AACC__________CAUCG...AUA-5'\n_____________|_______________________|\n_____________39______________________15\n |
157 -- 163 |
16 -- 22 |
-28.36 kcal/mol |
3.46196 kcal/mol |
9.47701 kcal/mol |
141 164@LB@ | |@LB@5'-CUG...AUUCC C GAA UACAA...UCA-3'@LB@ GUAG GGGG GGAACAGAGA@LB@ :||| |||| ||||||||||@LB@ UAUC CCCC CCUUGUCUCU@LB@3'-UUU...UAGAC U AACC CAUCG...AUA-5'@LB@ | |@LB@ 39 15@LB@@LB@@LB@Energy -15.42 kcal/mol@LB@Hybridization Energy -28.36 kcal/mol@LB@Unfolding Energy - mRNA 3.46196 kcal/mol@LB@Unfolding Energy - sRNA 9.47701 kcal/mol@LB@@LB@Position - mRNA 142 -- 163@LB@Position - sRNA 16 -- 38@LB@Position Seed - mRNA 157 -- 163@LB@Position Seed - sRNA 16 -- 22@LB@ |
| 73 |
0.005255 |
0.2402 |
bsu21750 |
scuA |
-12.63 |
0.082513 |
190 -- 220 |
28 -- 51 |
SCO1 protein |
|
_____________189_____________________________221\n_____________|_______________________________|\n5'-GGG...GGAAA____GGAU___A___A__UUAUCA_______AACGG...AGC-3'\n______________GGAU____GUC_UGA_GG______AGGGGUU\n______________||||____:||_|||_:|______|||||||\n______________CCUA____UAG_ACU_UC______UCCCCAA\n3'-UUU...AAAAG____GAAC_______A_______________CCCCU...AUA-5'\n_____________|_______________________________|\n_____________52______________________________27\n |
214 -- 220 |
28 -- 34 |
-18.667 kcal/mol |
5.06013 kcal/mol |
0.974859 kcal/mol |
189 221@LB@ | |@LB@5'-GGG...GGAAA GGAU A A UUAUCA AACGG...AGC-3'@LB@ GGAU GUC UGA GG AGGGGUU@LB@ |||| :|| ||| :| |||||||@LB@ CCUA UAG ACU UC UCCCCAA@LB@3'-UUU...AAAAG GAAC A CCCCU...AUA-5'@LB@ | |@LB@ 52 27@LB@@LB@@LB@Energy -12.63 kcal/mol@LB@Hybridization Energy -18.667 kcal/mol@LB@Unfolding Energy - mRNA 5.06013 kcal/mol@LB@Unfolding Energy - sRNA 0.974859 kcal/mol@LB@@LB@Position - mRNA 190 -- 220@LB@Position - sRNA 28 -- 51@LB@Position Seed - mRNA 214 -- 220@LB@Position Seed - sRNA 28 -- 34@LB@ |
