145 |
0.01267 |
0.2913 |
bsu36760 |
murAA |
-10.92 |
0.156018 |
188 -- 194 |
30 -- 36 |
UDP-N-acetylglucosamine 1-carboxyvinyltransferase 1 |
|
_____________187_____195\n_____________|_______|\n5'-UAG...GACGC_______AAUAC...UAU-3'\n______________GGAGGGG\n______________:||||||\n______________UCUCCCC\n3'-UUU...GACUA_______AACCC...AUA-5'\n_____________|_______|\n_____________37______29\n |
188 -- 194 |
30 -- 36 |
-13.3986 kcal/mol |
2.34028 kcal/mol |
0.133643 kcal/mol |
187 195@LB@ | |@LB@5'-UAG...GACGC AAUAC...UAU-3'@LB@ GGAGGGG@LB@ :||||||@LB@ UCUCCCC@LB@3'-UUU...GACUA AACCC...AUA-5'@LB@ | |@LB@ 37 29@LB@@LB@@LB@Energy -10.92 kcal/mol@LB@Hybridization Energy -13.3986 kcal/mol@LB@Unfolding Energy - mRNA 2.34028 kcal/mol@LB@Unfolding Energy - sRNA 0.133643 kcal/mol@LB@@LB@Position - mRNA 188 -- 194@LB@Position - sRNA 30 -- 36@LB@Position Seed - mRNA 188 -- 194@LB@Position Seed - sRNA 30 -- 36@LB@ |
137 |
0.01211 |
0.2883 |
bsu27850 |
nadA |
-8.79 |
0.309443 |
168 -- 191 |
32 -- 52 |
quinolinate synthase A |
|
_____________167_______________________192\n_____________|_________________________|\n5'-UAC...UGUUA__UU___AAA__A____________AAUGC...UUA-3'\n______________CG__AUC___UG_AUCU_GUGGAGG\n______________||__|||___||_||||_:|:||||\n______________GC__UAG___AC_UAGA_UAUCUCC\n3'-UUU...AAAAA__C____A_________C_______CCAAC...AUA-5'\n_____________|_________________________|\n_____________53________________________31\n |
185 -- 191 |
32 -- 38 |
-13.8724 kcal/mol |
4.10431 kcal/mol |
0.976384 kcal/mol |
167 192@LB@ | |@LB@5'-UAC...UGUUA UU AAA A AAUGC...UUA-3'@LB@ CG AUC UG AUCU GUGGAGG@LB@ || ||| || |||| :|:||||@LB@ GC UAG AC UAGA UAUCUCC@LB@3'-UUU...AAAAA C A C CCAAC...AUA-5'@LB@ | |@LB@ 53 31@LB@@LB@@LB@Energy -8.79 kcal/mol@LB@Hybridization Energy -13.8724 kcal/mol@LB@Unfolding Energy - mRNA 4.10431 kcal/mol@LB@Unfolding Energy - sRNA 0.976384 kcal/mol@LB@@LB@Position - mRNA 168 -- 191@LB@Position - sRNA 32 -- 52@LB@Position Seed - mRNA 185 -- 191@LB@Position Seed - sRNA 32 -- 38@LB@ |
52 |
0.002415 |
0.1549 |
bsu03320 |
nasB |
-8.41 |
0.344801 |
188 -- 199 |
36 -- 51 |
assimilatory nitrate reductase electron transfer subunit |
|
_____________187______________200\n_____________|________________|\n5'-UUU...CCAAA________________CAUGA...UCA-3'\n______________GGA____GGUCUGAUA\n______________|||____|:|||||||\n______________CCU____CUAGACUAU\n3'-UUU...AAAAG___AGAA_________CUCCC...AUA-5'\n_____________|________________|\n_____________52_______________35\n |
193 -- 199 |
36 -- 42 |
-13.3061 kcal/mol |
3.93547 kcal/mol |
0.960469 kcal/mol |
187 200@LB@ | |@LB@5'-UUU...CCAAA CAUGA...UCA-3'@LB@ GGA GGUCUGAUA@LB@ ||| |:|||||||@LB@ CCU CUAGACUAU@LB@3'-UUU...AAAAG AGAA CUCCC...AUA-5'@LB@ | |@LB@ 52 35@LB@@LB@@LB@Energy -8.41 kcal/mol@LB@Hybridization Energy -13.3061 kcal/mol@LB@Unfolding Energy - mRNA 3.93547 kcal/mol@LB@Unfolding Energy - sRNA 0.960469 kcal/mol@LB@@LB@Position - mRNA 188 -- 199@LB@Position - sRNA 36 -- 51@LB@Position Seed - mRNA 193 -- 199@LB@Position Seed - sRNA 36 -- 42@LB@ |
60 |
0.003464 |
0.1926 |
bsu03300 |
nasD |
-15.33 |
0.025906 |
190 -- 205 |
34 -- 52 |
nitrite reductase |
|
_____________189_________________206\n_____________|___________________|\n5'-UUU...AGGAG___________________AAAAA...CAA-3'\n______________CGGAUC___AUCUGAUGGG\n______________||||||___|||||||:|:\n______________GCCUAG___UAGACUAUCU\n3'-UUU...AAAAA______AAC__________CCCCA...AUA-5'\n_____________|___________________|\n_____________53__________________33\n |
199 -- 205 |
34 -- 40 |
-21.0079 kcal/mol |
4.70189 kcal/mol |
0.976339 kcal/mol |
189 206@LB@ | |@LB@5'-UUU...AGGAG AAAAA...CAA-3'@LB@ CGGAUC AUCUGAUGGG@LB@ |||||| |||||||:|:@LB@ GCCUAG UAGACUAUCU@LB@3'-UUU...AAAAA AAC CCCCA...AUA-5'@LB@ | |@LB@ 53 33@LB@@LB@@LB@Energy -15.33 kcal/mol@LB@Hybridization Energy -21.0079 kcal/mol@LB@Unfolding Energy - mRNA 4.70189 kcal/mol@LB@Unfolding Energy - sRNA 0.976339 kcal/mol@LB@@LB@Position - mRNA 190 -- 205@LB@Position - sRNA 34 -- 52@LB@Position Seed - mRNA 199 -- 205@LB@Position Seed - sRNA 34 -- 40@LB@ |
187 |
0.01872 |
0.3269 |
bsu10530 |
ntdC |
-12.62 |
0.082941 |
177 -- 192 |
32 -- 53 |
NTD biosynthesis operon putative oxidoreductase NtdC |
|
_____________176____________________193\n_____________|______________________|\n5'-CCU...AUUAA_______A______________AAAUA...ACA-3'\n______________UUGGAUC_UGA______GGAGG\n______________|:|||||_|||______:||||\n______________AGCCUAG_ACU______UCUCC\n3'-UUU...AAAAA_______A___AGACUA_____CCAAC...AUA-5'\n_____________|______________________|\n_____________54_____________________31\n |
177 -- 183 |
47 -- 53 |
-16.8717 kcal/mol |
3.27102 kcal/mol |
0.981755 kcal/mol |
176 193@LB@ | |@LB@5'-CCU...AUUAA A AAAUA...ACA-3'@LB@ UUGGAUC UGA GGAGG@LB@ |:||||| ||| :||||@LB@ AGCCUAG ACU UCUCC@LB@3'-UUU...AAAAA A AGACUA CCAAC...AUA-5'@LB@ | |@LB@ 54 31@LB@@LB@@LB@Energy -12.62 kcal/mol@LB@Hybridization Energy -16.8717 kcal/mol@LB@Unfolding Energy - mRNA 3.27102 kcal/mol@LB@Unfolding Energy - sRNA 0.981755 kcal/mol@LB@@LB@Position - mRNA 177 -- 192@LB@Position - sRNA 32 -- 53@LB@Position Seed - mRNA 177 -- 183@LB@Position Seed - sRNA 47 -- 53@LB@ |
182 |
0.01724 |
0.3161 |
bsu22340 |
nth |
-14.82 |
0.032761 |
30 -- 59 |
25 -- 52 |
endonuclease III |
|
_____________29______________________________60\n_____________|_______________________________|\n5'-CAG...UUGAC______________A_____AGAAAAA____CUUAA...UAG-3'\n______________CGGAUUUUG_UUUG_AUGGA_______UGGG\n______________|||||:|||_|:||_||:||_______||||\n______________GCCUAGAAC_AGAC_UAUCU_______ACCC\n3'-UUU...AAAAA_________U__________CCCCA______CUUGU...AUA-5'\n_____________|_______________________________|\n_____________53______________________________24\n |
32 -- 38 |
44 -- 50 |
-22.2299 kcal/mol |
6.43208 kcal/mol |
0.980838 kcal/mol |
29 60@LB@ | |@LB@5'-CAG...UUGAC A AGAAAAA CUUAA...UAG-3'@LB@ CGGAUUUUG UUUG AUGGA UGGG@LB@ |||||:||| |:|| ||:|| ||||@LB@ GCCUAGAAC AGAC UAUCU ACCC@LB@3'-UUU...AAAAA U CCCCA CUUGU...AUA-5'@LB@ | |@LB@ 53 24@LB@@LB@@LB@Energy -14.82 kcal/mol@LB@Hybridization Energy -22.2299 kcal/mol@LB@Unfolding Energy - mRNA 6.43208 kcal/mol@LB@Unfolding Energy - sRNA 0.980838 kcal/mol@LB@@LB@Position - mRNA 30 -- 59@LB@Position - sRNA 25 -- 52@LB@Position Seed - mRNA 32 -- 38@LB@Position Seed - sRNA 44 -- 50@LB@ |
98 |
0.008247 |
0.2778 |
bsu19360 |
odhB |
-11.30 |
0.136272 |
146 -- 191 |
23 -- 51 |
dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex |
|
_____________145____________________________________________192\n_____________|______________________________________________|\n5'-AAG...GAACA___ACGUA___U_________CUU_ACUCGCAAAAACUAAG_____AAUGA...AAU-3'\n______________GGA_____UUG_AUCUGAUAG___G________________GGGGA\n______________|||_____|||_|||||||||___|________________|||||\n______________CCU_____AAC_UAGACUAUC___C________________CCCCU\n3'-UUU...AAAAG___AG________________UCC_CAA__________________UGUCU...AUA-5'\n_____________|______________________________________________|\n_____________52_____________________________________________22\n |
160 -- 166 |
35 -- 41 |
-19.511 kcal/mol |
7.22607 kcal/mol |
0.980049 kcal/mol |
145 192@LB@ | |@LB@5'-AAG...GAACA ACGUA U CUU ACUCGCAAAAACUAAG AAUGA...AAU-3'@LB@ GGA UUG AUCUGAUAG G GGGGA@LB@ ||| ||| ||||||||| | |||||@LB@ CCU AAC UAGACUAUC C CCCCU@LB@3'-UUU...AAAAG AG UCC CAA UGUCU...AUA-5'@LB@ | |@LB@ 52 22@LB@@LB@@LB@Energy -11.30 kcal/mol@LB@Hybridization Energy -19.511 kcal/mol@LB@Unfolding Energy - mRNA 7.22607 kcal/mol@LB@Unfolding Energy - sRNA 0.980049 kcal/mol@LB@@LB@Position - mRNA 146 -- 191@LB@Position - sRNA 23 -- 51@LB@Position Seed - mRNA 160 -- 166@LB@Position Seed - sRNA 35 -- 41@LB@ |
101 |
0.008451 |
0.2778 |
bsu32150 |
paiA |
-11.07 |
0.148459 |
77 -- 92 |
23 -- 39 |
protease synthase and sporulation negative regulatory protein PAI 1 |
|
_____________76________________93\n_____________|_________________|\n5'-AUU...AUCAC_______A______U__UGAAG...CAC-3'\n______________GAUAGGG__GUUGG_GA\n______________|||||:|__|||||_||\n______________CUAUCUC__CAACC_CU\n3'-UUU...CUAGA_______CC_____C__UGUCU...AUA-5'\n_____________|_________________|\n_____________40________________22\n |
77 -- 83 |
33 -- 39 |
-14.8457 kcal/mol |
2.98855 kcal/mol |
0.791731 kcal/mol |
76 93@LB@ | |@LB@5'-AUU...AUCAC A U UGAAG...CAC-3'@LB@ GAUAGGG GUUGG GA@LB@ |||||:| ||||| ||@LB@ CUAUCUC CAACC CU@LB@3'-UUU...CUAGA CC C UGUCU...AUA-5'@LB@ | |@LB@ 40 22@LB@@LB@@LB@Energy -11.07 kcal/mol@LB@Hybridization Energy -14.8457 kcal/mol@LB@Unfolding Energy - mRNA 2.98855 kcal/mol@LB@Unfolding Energy - sRNA 0.791731 kcal/mol@LB@@LB@Position - mRNA 77 -- 92@LB@Position - sRNA 23 -- 39@LB@Position Seed - mRNA 77 -- 83@LB@Position Seed - sRNA 33 -- 39@LB@ |
153 |
0.01377 |
0.2994 |
bsu37510 |
pbpG |
-15.25 |
0.026855 |
95 -- 111 |
23 -- 38 |
penicillin-binding protein 2D |
|
_____________94_________________112\n_____________|__________________|\n5'-UGU...AAAGU_______AU__C______AAAAG...UGU-3'\n______________AUAGAGG__GG__GGGGA\n______________|||||||__||__|||||\n______________UAUCUCC__CC__CCCCU\n3'-UUU...UAGAC___________AA_____UGUCU...AUA-5'\n_____________|__________________|\n_____________39_________________22\n |
95 -- 101 |
32 -- 38 |
-18.2895 kcal/mol |
2.3676 kcal/mol |
0.66977 kcal/mol |
94 112@LB@ | |@LB@5'-UGU...AAAGU AU C AAAAG...UGU-3'@LB@ AUAGAGG GG GGGGA@LB@ ||||||| || |||||@LB@ UAUCUCC CC CCCCU@LB@3'-UUU...UAGAC AA UGUCU...AUA-5'@LB@ | |@LB@ 39 22@LB@@LB@@LB@Energy -15.25 kcal/mol@LB@Hybridization Energy -18.2895 kcal/mol@LB@Unfolding Energy - mRNA 2.3676 kcal/mol@LB@Unfolding Energy - sRNA 0.66977 kcal/mol@LB@@LB@Position - mRNA 95 -- 111@LB@Position - sRNA 23 -- 38@LB@Position Seed - mRNA 95 -- 101@LB@Position Seed - sRNA 32 -- 38@LB@ |
143 |
0.01244 |
0.2883 |
bsu13980 |
pbpH |
-18.09 |
0.006437 |
121 -- 135 |
29 -- 45 |
penicillin-binding enzyme for formation of rod-shaped peptidoglycan cell wall |
|
_____________120_______________136\n_____________|_________________|\n5'-UUU...UUGAA_________________AACCA...ACG-3'\n______________UGAUUUGA__GAGGGGU\n______________||||:|||__|||||||\n______________ACUAGACU__CUCCCCA\n3'-UUU...CUAGA________AU_______ACCCC...AUA-5'\n_____________|_________________|\n_____________46________________28\n |
129 -- 135 |
29 -- 35 |
-21.9726 kcal/mol |
2.91712 kcal/mol |
0.969832 kcal/mol |
120 136@LB@ | |@LB@5'-UUU...UUGAA AACCA...ACG-3'@LB@ UGAUUUGA GAGGGGU@LB@ ||||:||| |||||||@LB@ ACUAGACU CUCCCCA@LB@3'-UUU...CUAGA AU ACCCC...AUA-5'@LB@ | |@LB@ 46 28@LB@@LB@@LB@Energy -18.09 kcal/mol@LB@Hybridization Energy -21.9726 kcal/mol@LB@Unfolding Energy - mRNA 2.91712 kcal/mol@LB@Unfolding Energy - sRNA 0.969832 kcal/mol@LB@@LB@Position - mRNA 121 -- 135@LB@Position - sRNA 29 -- 45@LB@Position Seed - mRNA 129 -- 135@LB@Position Seed - sRNA 29 -- 35@LB@ |