| 152 |
0.01351 |
0.2966 |
bsu25600 |
comER |
-9.59 |
0.243237 |
173 -- 194 |
30 -- 51 |
ComE operon protein 4 |
|
_____________172____________________195\n_____________|______________________|\n5'-AGC...UUAGA____AAUAGCUCAAA_______AAACC...CAA-3'\n______________GGAU___________GGAGGGG\n______________||||___________:||||||\n______________CCUA___________UCUCCCC\n3'-UUU...AAAAG____GAACUAGACUA_______AACCC...AUA-5'\n_____________|______________________|\n_____________52_____________________29\n |
188 -- 194 |
30 -- 36 |
-16.7526 kcal/mol |
6.18889 kcal/mol |
0.974282 kcal/mol |
172 195@LB@ | |@LB@5'-AGC...UUAGA AAUAGCUCAAA AAACC...CAA-3'@LB@ GGAU GGAGGGG@LB@ |||| :||||||@LB@ CCUA UCUCCCC@LB@3'-UUU...AAAAG GAACUAGACUA AACCC...AUA-5'@LB@ | |@LB@ 52 29@LB@@LB@@LB@Energy -9.59 kcal/mol@LB@Hybridization Energy -16.7526 kcal/mol@LB@Unfolding Energy - mRNA 6.18889 kcal/mol@LB@Unfolding Energy - sRNA 0.974282 kcal/mol@LB@@LB@Position - mRNA 173 -- 194@LB@Position - sRNA 30 -- 51@LB@Position Seed - mRNA 188 -- 194@LB@Position Seed - sRNA 30 -- 36@LB@ |
| 77 |
0.005688 |
0.2441 |
bsu35180 |
csbA |
-19.97 |
0.002143 |
87 -- 126 |
11 -- 50 |
general stress protein CsbA |
|
_____________86__________________________________________127\n_____________|___________________________________________|\n5'-UGA...UGAUU_____________AA_______A___U_U__G___________GAAUG...CAG-3'\n______________GAUUUUGG_CUGA___AGGGGU_UGG_G_AA_UAGAGGG_AGC\n______________|||:|||:_||||___||||||_|||_|_||_:||||:|_|||\n______________CUAGAACU_GACU___UCCCCA_ACC_C_UU_GUCUCUC_UCG\n3'-UUU...AAAGC________A____AUC____________C__________A___AAGAG...AUA-5'\n_____________|___________________________________________|\n_____________51__________________________________________10\n |
117 -- 123 |
15 -- 21 |
-37.9995 kcal/mol |
8.07502 kcal/mol |
9.95602 kcal/mol |
86 127@LB@ | |@LB@5'-UGA...UGAUU AA A U U G GAAUG...CAG-3'@LB@ GAUUUUGG CUGA AGGGGU UGG G AA UAGAGGG AGC@LB@ |||:|||: |||| |||||| ||| | || :||||:| |||@LB@ CUAGAACU GACU UCCCCA ACC C UU GUCUCUC UCG@LB@3'-UUU...AAAGC A AUC C A AAGAG...AUA-5'@LB@ | |@LB@ 51 10@LB@@LB@@LB@Energy -19.97 kcal/mol@LB@Hybridization Energy -37.9995 kcal/mol@LB@Unfolding Energy - mRNA 8.07502 kcal/mol@LB@Unfolding Energy - sRNA 9.95602 kcal/mol@LB@@LB@Position - mRNA 87 -- 126@LB@Position - sRNA 11 -- 50@LB@Position Seed - mRNA 117 -- 123@LB@Position Seed - sRNA 15 -- 21@LB@ |
| 74 |
0.005527 |
0.2441 |
bsu14880 |
ctaB |
-11.75 |
0.115909 |
1 -- 10 |
34 -- 43 |
protoheme IX farnesyltransferase 2 |
|
______________1_________11\n______________|_________|\n___________5'-__________AAUAA...UCG-3'\n______________GUCUGAUAGA\n______________:|||||||||\n______________UAGACUAUCU\n3'-UUU...AGAAC__________CCCCA...AUA-5'\n_____________|__________|\n_____________44_________33\n |
4 -- 10 |
34 -- 40 |
-13.2371 kcal/mol |
0.533082 kcal/mol |
0.957751 kcal/mol |
1 11@LB@ | |@LB@ 5'- AAUAA...UCG-3'@LB@ GUCUGAUAGA@LB@ :|||||||||@LB@ UAGACUAUCU@LB@3'-UUU...AGAAC CCCCA...AUA-5'@LB@ | |@LB@ 44 33@LB@@LB@@LB@Energy -11.75 kcal/mol@LB@Hybridization Energy -13.2371 kcal/mol@LB@Unfolding Energy - mRNA 0.533082 kcal/mol@LB@Unfolding Energy - sRNA 0.957751 kcal/mol@LB@@LB@Position - mRNA 1 -- 10@LB@Position - sRNA 34 -- 43@LB@Position Seed - mRNA 4 -- 10@LB@Position Seed - sRNA 34 -- 40@LB@ |
| 1 |
3.729e-08 |
0.0001244 |
bsu14890 |
ctaC |
-17.27 |
0.009980 |
187 -- 199 |
23 -- 34 |
cytochrome c oxidase subunit 2 |
|
_____________186___________200\n_____________|_____________|\n5'-CGA...AGAAA__________U__AAUGG...GCG-3'\n______________AGGGGUUGGG_GA\n______________||||||||||_||\n______________UCCCCAACCC_CU\n3'-UUU...CUAUC_____________UGUCU...AUA-5'\n_____________|_____________|\n_____________35____________22\n |
190 -- 196 |
25 -- 31 |
-21.5157 kcal/mol |
4.12609 kcal/mol |
0.123213 kcal/mol |
186 200@LB@ | |@LB@5'-CGA...AGAAA U AAUGG...GCG-3'@LB@ AGGGGUUGGG GA@LB@ |||||||||| ||@LB@ UCCCCAACCC CU@LB@3'-UUU...CUAUC UGUCU...AUA-5'@LB@ | |@LB@ 35 22@LB@@LB@@LB@Energy -17.27 kcal/mol@LB@Hybridization Energy -21.5157 kcal/mol@LB@Unfolding Energy - mRNA 4.12609 kcal/mol@LB@Unfolding Energy - sRNA 0.123213 kcal/mol@LB@@LB@Position - mRNA 187 -- 199@LB@Position - sRNA 23 -- 34@LB@Position Seed - mRNA 190 -- 196@LB@Position Seed - sRNA 25 -- 31@LB@ |
| 63 |
0.003897 |
0.2064 |
bsu14900 |
ctaD |
-14.39 |
0.039562 |
155 -- 192 |
22 -- 52 |
cytochrome c oxidase subunit 1 |
|
_____________154____________________________________193\n_____________|______________________________________|\n5'-GUG...AAAAG____AAGCAA__AG__A___AA___AGAUA________GGUCA...UGG-3'\n______________CGGA______GU__GG_AGA__GGG_____UUGGGGGA\n______________||||______:|__|:_|||__|||_____||||||:|\n______________GCCU______UA__CU_UCU__CCC_____AACCCCUU\n3'-UUU...AAAAA____AGAAC___GA__A___C_________________GUCUC...AUA-5'\n_____________|______________________________________|\n_____________53_____________________________________21\n |
186 -- 192 |
22 -- 28 |
-20.3858 kcal/mol |
4.11152 kcal/mol |
1.8808 kcal/mol |
154 193@LB@ | |@LB@5'-GUG...AAAAG AAGCAA AG A AA AGAUA GGUCA...UGG-3'@LB@ CGGA GU GG AGA GGG UUGGGGGA@LB@ |||| :| |: ||| ||| ||||||:|@LB@ GCCU UA CU UCU CCC AACCCCUU@LB@3'-UUU...AAAAA AGAAC GA A C GUCUC...AUA-5'@LB@ | |@LB@ 53 21@LB@@LB@@LB@Energy -14.39 kcal/mol@LB@Hybridization Energy -20.3858 kcal/mol@LB@Unfolding Energy - mRNA 4.11152 kcal/mol@LB@Unfolding Energy - sRNA 1.8808 kcal/mol@LB@@LB@Position - mRNA 155 -- 192@LB@Position - sRNA 22 -- 52@LB@Position Seed - mRNA 186 -- 192@LB@Position Seed - sRNA 22 -- 28@LB@ |
| 178 |
0.01684 |
0.3152 |
bsu09460 |
ctrA |
-17.20 |
0.010320 |
182 -- 213 |
20 -- 50 |
amino acid permease |
|
_____________181_________________________________214\n_____________|___________________________________|\n5'-CAA...UAGAU____GG__G____________AA__AAA_______UUUUU...UAA-3'\n______________GAUC__GA_UUGA___AGGGG__UG___GGGAGCG\n______________||||__||_:|||___|||||__||___||||:|:\n______________CUAG__CU_GACU___UCCCC__AC___CCCUUGU\n3'-UUU...AAAGC____AA__A____AUC_____A_____________CUCUC...AUA-5'\n_____________|___________________________________|\n_____________51__________________________________19\n |
207 -- 213 |
20 -- 26 |
-25.5851 kcal/mol |
4.15406 kcal/mol |
4.22897 kcal/mol |
181 214@LB@ | |@LB@5'-CAA...UAGAU GG G AA AAA UUUUU...UAA-3'@LB@ GAUC GA UUGA AGGGG UG GGGAGCG@LB@ |||| || :||| ||||| || ||||:|:@LB@ CUAG CU GACU UCCCC AC CCCUUGU@LB@3'-UUU...AAAGC AA A AUC A CUCUC...AUA-5'@LB@ | |@LB@ 51 19@LB@@LB@@LB@Energy -17.20 kcal/mol@LB@Hybridization Energy -25.5851 kcal/mol@LB@Unfolding Energy - mRNA 4.15406 kcal/mol@LB@Unfolding Energy - sRNA 4.22897 kcal/mol@LB@@LB@Position - mRNA 182 -- 213@LB@Position - sRNA 20 -- 50@LB@Position Seed - mRNA 207 -- 213@LB@Position Seed - sRNA 20 -- 26@LB@ |
| 28 |
0.0009752 |
0.1113 |
bsu00830 |
ctsR |
-15.39 |
0.025224 |
189 -- 206 |
23 -- 36 |
transcriptional regulator CtsR |
|
_____________188________________207\n_____________|__________________|\n5'-UGG...GUAAA___G_______AGU____CAUAA...CAG-3'\n______________GGA_GGGGUUG___GGGA\n______________:||_|||||||___||||\n______________UCU_CCCCAAC___CCCU\n3'-UUU...GACUA__________________UGUCU...AUA-5'\n_____________|__________________|\n_____________37_________________22\n |
193 -- 199 |
27 -- 33 |
-19.308 kcal/mol |
3.78136 kcal/mol |
0.139628 kcal/mol |
188 207@LB@ | |@LB@5'-UGG...GUAAA G AGU CAUAA...CAG-3'@LB@ GGA GGGGUUG GGGA@LB@ :|| ||||||| ||||@LB@ UCU CCCCAAC CCCU@LB@3'-UUU...GACUA UGUCU...AUA-5'@LB@ | |@LB@ 37 22@LB@@LB@@LB@Energy -15.39 kcal/mol@LB@Hybridization Energy -19.308 kcal/mol@LB@Unfolding Energy - mRNA 3.78136 kcal/mol@LB@Unfolding Energy - sRNA 0.139628 kcal/mol@LB@@LB@Position - mRNA 189 -- 206@LB@Position - sRNA 23 -- 36@LB@Position Seed - mRNA 193 -- 199@LB@Position Seed - sRNA 27 -- 33@LB@ |
| 148 |
0.01313 |
0.296 |
bsu02100 |
cypC |
-16.43 |
0.015277 |
151 -- 198 |
11 -- 53 |
fatty-acid peroxygenase |
|
_____________150______________________________________________199\n_____________|________________________________________________|\n5'-CAA...UAUAG_____AGAUAACG___AAA_______UAAAAA____G_C_____A___GGAUG...AUU-3'\n______________UCGGA________UGA___UAGAGGG______GGAA_G_AGGGU_AGC\n______________|||||________|||___|||||||______||||_:_||:||_|||\n______________AGCCU________ACU___AUCUCCC______CCUU_U_UCUCA_UCG\n3'-UUU...AAAAA_____AGAACUAG_____________CAACC_____G_C_________AAGAG...AUA-5'\n_____________|________________________________________________|\n_____________54_______________________________________________10\n |
170 -- 176 |
31 -- 37 |
-31.9294 kcal/mol |
5.5363 kcal/mol |
9.96369 kcal/mol |
150 199@LB@ | |@LB@5'-CAA...UAUAG AGAUAACG AAA UAAAAA G C A GGAUG...AUU-3'@LB@ UCGGA UGA UAGAGGG GGAA G AGGGU AGC@LB@ ||||| ||| ||||||| |||| : ||:|| |||@LB@ AGCCU ACU AUCUCCC CCUU U UCUCA UCG@LB@3'-UUU...AAAAA AGAACUAG CAACC G C AAGAG...AUA-5'@LB@ | |@LB@ 54 10@LB@@LB@@LB@Energy -16.43 kcal/mol@LB@Hybridization Energy -31.9294 kcal/mol@LB@Unfolding Energy - mRNA 5.5363 kcal/mol@LB@Unfolding Energy - sRNA 9.96369 kcal/mol@LB@@LB@Position - mRNA 151 -- 198@LB@Position - sRNA 11 -- 53@LB@Position Seed - mRNA 170 -- 176@LB@Position Seed - sRNA 31 -- 37@LB@ |
| 23 |
0.0004941 |
0.06638 |
bsu00930 |
cysE |
-16.71 |
0.013304 |
161 -- 195 |
22 -- 53 |
serine acetyltransferase |
|
_____________160_________________________________196\n_____________|___________________________________|\n5'-CCU...UUUUA______AGAG__AA__A_______AAACG______AGCAU...UAC-3'\n______________UUGGGU____GA__UC_GAUAGAG_____GGGGGA\n______________|:||:|____||__||_|||||||_____||||:|\n______________AGCCUA____CU__AG_CUAUCUC_____CCCCUU\n3'-UUU...AAAAA______GAA_______A_______CCCAA______GUCUC...AUA-5'\n_____________|___________________________________|\n_____________54__________________________________21\n |
178 -- 184 |
33 -- 39 |
-24.9399 kcal/mol |
6.34776 kcal/mol |
1.88616 kcal/mol |
160 196@LB@ | |@LB@5'-CCU...UUUUA AGAG AA A AAACG AGCAU...UAC-3'@LB@ UUGGGU GA UC GAUAGAG GGGGGA@LB@ |:||:| || || ||||||| ||||:|@LB@ AGCCUA CU AG CUAUCUC CCCCUU@LB@3'-UUU...AAAAA GAA A CCCAA GUCUC...AUA-5'@LB@ | |@LB@ 54 21@LB@@LB@@LB@Energy -16.71 kcal/mol@LB@Hybridization Energy -24.9399 kcal/mol@LB@Unfolding Energy - mRNA 6.34776 kcal/mol@LB@Unfolding Energy - sRNA 1.88616 kcal/mol@LB@@LB@Position - mRNA 161 -- 195@LB@Position - sRNA 22 -- 53@LB@Position Seed - mRNA 178 -- 184@LB@Position Seed - sRNA 33 -- 39@LB@ |
| 154 |
0.01388 |
0.2994 |
bsu23480 |
dacF |
-14.01 |
0.046761 |
175 -- 192 |
31 -- 51 |
D-alanyl-D-alanine carboxypeptidase DacF |
|
_____________174___________________193\n_____________|_____________________|\n5'-UGG...AAAAA_____A___A___________CUUUU...UUG-3'\n______________GGAUU_UGA____AUGGAGGG\n______________||||:_|||____||:|||||\n______________CCUAG_ACU____UAUCUCCC\n3'-UUU...AAAAG_____A___AGAC________CAACC...AUA-5'\n_____________|_____________________|\n_____________52____________________30\n |
186 -- 192 |
31 -- 37 |
-18.482 kcal/mol |
3.50235 kcal/mol |
0.970589 kcal/mol |
174 193@LB@ | |@LB@5'-UGG...AAAAA A A CUUUU...UUG-3'@LB@ GGAUU UGA AUGGAGGG@LB@ ||||: ||| ||:|||||@LB@ CCUAG ACU UAUCUCCC@LB@3'-UUU...AAAAG A AGAC CAACC...AUA-5'@LB@ | |@LB@ 52 30@LB@@LB@@LB@Energy -14.01 kcal/mol@LB@Hybridization Energy -18.482 kcal/mol@LB@Unfolding Energy - mRNA 3.50235 kcal/mol@LB@Unfolding Energy - sRNA 0.970589 kcal/mol@LB@@LB@Position - mRNA 175 -- 192@LB@Position - sRNA 31 -- 51@LB@Position Seed - mRNA 186 -- 192@LB@Position Seed - sRNA 31 -- 37@LB@ |
