| 193 |
0.01926 |
0.3269 |
bsu04460 |
dctR |
-12.61 |
0.083358 |
128 -- 157 |
20 -- 50 |
C4-dicarboxylate response regulator DctR |
|
_____________127_____________________________158\n_____________|_______________________________|\n5'-CUG...CGAUA__AG______CACAU_C____CA________UCUUU...UCU-3'\n______________GA__UUGAUU_____G_GGGG___GGGGACA\n______________||__|||||:_____|_||||___|||:|||\n______________CU__AACUAG_____C_CCCC___CCCUUGU\n3'-UUU...AAAGC__AG______ACUAU_U____AAC_______CUCUC...AUA-5'\n_____________|_______________________________|\n_____________51______________________________19\n |
151 -- 157 |
20 -- 26 |
-24.008 kcal/mol |
7.17274 kcal/mol |
4.22897 kcal/mol |
127 158@LB@ | |@LB@5'-CUG...CGAUA AG CACAU C CA UCUUU...UCU-3'@LB@ GA UUGAUU G GGGG GGGGACA@LB@ || |||||: | |||| |||:|||@LB@ CU AACUAG C CCCC CCCUUGU@LB@3'-UUU...AAAGC AG ACUAU U AAC CUCUC...AUA-5'@LB@ | |@LB@ 51 19@LB@@LB@@LB@Energy -12.61 kcal/mol@LB@Hybridization Energy -24.008 kcal/mol@LB@Unfolding Energy - mRNA 7.17274 kcal/mol@LB@Unfolding Energy - sRNA 4.22897 kcal/mol@LB@@LB@Position - mRNA 128 -- 157@LB@Position - sRNA 20 -- 50@LB@Position Seed - mRNA 151 -- 157@LB@Position Seed - sRNA 20 -- 26@LB@ |
| 144 |
0.01244 |
0.2883 |
bsu15720 |
def |
-10.99 |
0.152648 |
175 -- 193 |
31 -- 50 |
peptide deformylase |
|
_____________174___________________194\n_____________|_____________________|\n5'-GCG...UGUAA_____CAC_____________UAACA...AUG-3'\n______________GAUCU___GUCU__UGGAGGG\n______________|||||___:|||__|:|||||\n______________CUAGA___UAGA__AUCUCCC\n3'-UUU...AAAGC_____AC_____CU_______CAACC...AUA-5'\n_____________|_____________________|\n_____________51____________________30\n |
187 -- 193 |
31 -- 37 |
-18.0798 kcal/mol |
6.12249 kcal/mol |
0.970579 kcal/mol |
174 194@LB@ | |@LB@5'-GCG...UGUAA CAC UAACA...AUG-3'@LB@ GAUCU GUCU UGGAGGG@LB@ ||||| :||| |:|||||@LB@ CUAGA UAGA AUCUCCC@LB@3'-UUU...AAAGC AC CU CAACC...AUA-5'@LB@ | |@LB@ 51 30@LB@@LB@@LB@Energy -10.99 kcal/mol@LB@Hybridization Energy -18.0798 kcal/mol@LB@Unfolding Energy - mRNA 6.12249 kcal/mol@LB@Unfolding Energy - sRNA 0.970579 kcal/mol@LB@@LB@Position - mRNA 175 -- 193@LB@Position - sRNA 31 -- 50@LB@Position Seed - mRNA 187 -- 193@LB@Position Seed - sRNA 31 -- 37@LB@ |
| 113 |
0.00948 |
0.2799 |
bsu31960 |
dhbF |
-9.87 |
0.222399 |
16 -- 37 |
32 -- 53 |
dimodular nonribosomal peptide synthase |
|
_____________15______________________38\n_____________|_______________________|\n5'-AGA...CUCGA___U__________C________AUCAU...CAG-3'\n______________UCG_GGUCUUGAUU_GGUA_AGG\n______________|||_|:|||||||:_|:||_|||\n______________AGC_CUAGAACUAG_CUAU_UCC\n3'-UUU...AAAAA______________A____C___CCAAC...AUA-5'\n_____________|_______________________|\n_____________54______________________31\n |
22 -- 28 |
42 -- 48 |
-21.9493 kcal/mol |
11.0963 kcal/mol |
0.981755 kcal/mol |
15 38@LB@ | |@LB@5'-AGA...CUCGA U C AUCAU...CAG-3'@LB@ UCG GGUCUUGAUU GGUA AGG@LB@ ||| |:|||||||: |:|| |||@LB@ AGC CUAGAACUAG CUAU UCC@LB@3'-UUU...AAAAA A C CCAAC...AUA-5'@LB@ | |@LB@ 54 31@LB@@LB@@LB@Energy -9.87 kcal/mol@LB@Hybridization Energy -21.9493 kcal/mol@LB@Unfolding Energy - mRNA 11.0963 kcal/mol@LB@Unfolding Energy - sRNA 0.981755 kcal/mol@LB@@LB@Position - mRNA 16 -- 37@LB@Position - sRNA 32 -- 53@LB@Position Seed - mRNA 22 -- 28@LB@Position Seed - sRNA 42 -- 48@LB@ |
| 171 |
0.01646 |
0.3152 |
bsu04650 |
endB |
-11.87 |
0.110785 |
167 -- 193 |
29 -- 53 |
antitoxin EndoAI |
|
_____________166_________________________194\n_____________|___________________________|\n5'-UUC...AAGAG___U___CGUAA____________U__AUGUU...GAA-3'\n______________UCG_AUC_____GUUUGGUGGAGG_GU\n______________|||_|||_____:|:||:|:||||_||\n______________AGC_UAG_____UAGACUAUCUCC_CA\n3'-UUU...AAAAA___C___AAC______________C__ACCCC...AUA-5'\n_____________|___________________________|\n_____________54__________________________28\n |
184 -- 190 |
32 -- 38 |
-19.891 kcal/mol |
7.03825 kcal/mol |
0.985603 kcal/mol |
166 194@LB@ | |@LB@5'-UUC...AAGAG U CGUAA U AUGUU...GAA-3'@LB@ UCG AUC GUUUGGUGGAGG GU@LB@ ||| ||| :|:||:|:|||| ||@LB@ AGC UAG UAGACUAUCUCC CA@LB@3'-UUU...AAAAA C AAC C ACCCC...AUA-5'@LB@ | |@LB@ 54 28@LB@@LB@@LB@Energy -11.87 kcal/mol@LB@Hybridization Energy -19.891 kcal/mol@LB@Unfolding Energy - mRNA 7.03825 kcal/mol@LB@Unfolding Energy - sRNA 0.985603 kcal/mol@LB@@LB@Position - mRNA 167 -- 193@LB@Position - sRNA 29 -- 53@LB@Position Seed - mRNA 184 -- 190@LB@Position Seed - sRNA 32 -- 38@LB@ |
| 121 |
0.01072 |
0.2883 |
bsu28520 |
etfA |
-20.27 |
0.001775 |
7 -- 28 |
32 -- 50 |
electron transfer flavoprotein subunit alpha |
|
_____________6______________________29\n_____________|______________________|\n_____5'-CUUGAU_____________ACGA_____AUGCU...AUG-3'\n______________GAUCUUGAUCUGG____AGAGG\n______________||||||||||||:____|||||\n______________CUAGAACUAGACU____UCUCC\n3'-UUU...AAAGC_____________A________CCAAC...AUA-5'\n_____________|______________________|\n_____________51_____________________31\n |
13 -- 19 |
38 -- 44 |
-25.4493 kcal/mol |
4.21131 kcal/mol |
0.970199 kcal/mol |
6 29@LB@ | |@LB@ 5'-CUUGAU ACGA AUGCU...AUG-3'@LB@ GAUCUUGAUCUGG AGAGG@LB@ ||||||||||||: |||||@LB@ CUAGAACUAGACU UCUCC@LB@3'-UUU...AAAGC A CCAAC...AUA-5'@LB@ | |@LB@ 51 31@LB@@LB@@LB@Energy -20.27 kcal/mol@LB@Hybridization Energy -25.4493 kcal/mol@LB@Unfolding Energy - mRNA 4.21131 kcal/mol@LB@Unfolding Energy - sRNA 0.970199 kcal/mol@LB@@LB@Position - mRNA 7 -- 28@LB@Position - sRNA 32 -- 50@LB@Position Seed - mRNA 13 -- 19@LB@Position Seed - sRNA 38 -- 44@LB@ |
| 108 |
0.009234 |
0.2778 |
bsu12360 |
exuT |
-9.24 |
0.271038 |
118 -- 128 |
32 -- 43 |
hexuronate transporter |
|
_____________117__________129\n_____________|____________|\n5'-AAA...UUCCU____________AUUUA...UUA-3'\n______________GUC_GAUGGAGG\n______________:||_|||:||||\n______________UAG_CUAUCUCC\n3'-UUU...AGAAC___A________CCAAC...AUA-5'\n_____________|____________|\n_____________44___________31\n |
122 -- 128 |
32 -- 38 |
-13.9988 kcal/mol |
3.80022 kcal/mol |
0.959872 kcal/mol |
117 129@LB@ | |@LB@5'-AAA...UUCCU AUUUA...UUA-3'@LB@ GUC GAUGGAGG@LB@ :|| |||:||||@LB@ UAG CUAUCUCC@LB@3'-UUU...AGAAC A CCAAC...AUA-5'@LB@ | |@LB@ 44 31@LB@@LB@@LB@Energy -9.24 kcal/mol@LB@Hybridization Energy -13.9988 kcal/mol@LB@Unfolding Energy - mRNA 3.80022 kcal/mol@LB@Unfolding Energy - sRNA 0.959872 kcal/mol@LB@@LB@Position - mRNA 118 -- 128@LB@Position - sRNA 32 -- 43@LB@Position Seed - mRNA 122 -- 128@LB@Position Seed - sRNA 32 -- 38@LB@ |
| 32 |
0.001154 |
0.119 |
bsu32820 |
fadE |
-9.01 |
0.290043 |
236 -- 252 |
32 -- 52 |
acyl-CoA dehydrogenase |
|
_____________235____________________253\n_____________|______________________|\n5'-AUU...GGCGG________UA____________AUGUC...AGC-3'\n______________CGGAUUUU__AUC_____GAGG\n______________|||||:||__|||_____||||\n______________GCCUAGAA__UAG_____CUCC\n3'-UUU...AAAAA________C____ACUAU____CCAAC...AUA-5'\n_____________|______________________|\n_____________53_____________________31\n |
237 -- 243 |
45 -- 51 |
-13.909 kcal/mol |
3.91995 kcal/mol |
0.976384 kcal/mol |
235 253@LB@ | |@LB@5'-AUU...GGCGG UA AUGUC...AGC-3'@LB@ CGGAUUUU AUC GAGG@LB@ |||||:|| ||| ||||@LB@ GCCUAGAA UAG CUCC@LB@3'-UUU...AAAAA C ACUAU CCAAC...AUA-5'@LB@ | |@LB@ 53 31@LB@@LB@@LB@Energy -9.01 kcal/mol@LB@Hybridization Energy -13.909 kcal/mol@LB@Unfolding Energy - mRNA 3.91995 kcal/mol@LB@Unfolding Energy - sRNA 0.976384 kcal/mol@LB@@LB@Position - mRNA 236 -- 252@LB@Position - sRNA 32 -- 52@LB@Position Seed - mRNA 237 -- 243@LB@Position Seed - sRNA 45 -- 51@LB@ |
| 8 |
5.206e-05 |
0.02171 |
bsu37180 |
fadF |
-12.43 |
0.089383 |
154 -- 199 |
26 -- 74 |
'Evidence 3: Function proposed based on presence of conserved amino acid motif structural feature or limited homology; PubMedId: 17189250; Product type pe : enzyme' |
|
_____________153____________________________________________________200\n_____________|______________________________________________________|\n5'-CAA...AGAUU_________G_GA___________C______U___A_UAAAA______AA____AAUGA...ACA-3'\n______________CGGGGGUAG_G__________UCG_GGUCUU_AUC_G_____AGGGGG__UUGG\n______________|||||||||_|__________|||_|:||||_|||_|_____||:|||__||||\n______________GCCCCCAUC_C__________AGC_CUAGAA_UAG_C_____UCUCCC__AACC\n3'-UUU...GAACC_________G_GGUUCAAAAA__________C___A_UA_________C_____CCUUG...AUA-5'\n_____________|______________________________________________________|\n_____________75_____________________________________________________25\n |
156 -- 162 |
66 -- 72 |
-40.4869 kcal/mol |
12.2576 kcal/mol |
15.8011 kcal/mol |
153 200@LB@ | |@LB@5'-CAA...AGAUU G GA C U A UAAAA AA AAUGA...ACA-3'@LB@ CGGGGGUAG G UCG GGUCUU AUC G AGGGGG UUGG@LB@ ||||||||| | ||| |:|||| ||| | ||:||| ||||@LB@ GCCCCCAUC C AGC CUAGAA UAG C UCUCCC AACC@LB@3'-UUU...GAACC G GGUUCAAAAA C A UA C CCUUG...AUA-5'@LB@ | |@LB@ 75 25@LB@@LB@@LB@Energy -12.43 kcal/mol@LB@Hybridization Energy -40.4869 kcal/mol@LB@Unfolding Energy - mRNA 12.2576 kcal/mol@LB@Unfolding Energy - sRNA 15.8011 kcal/mol@LB@@LB@Position - mRNA 154 -- 199@LB@Position - sRNA 26 -- 74@LB@Position Seed - mRNA 156 -- 162@LB@Position Seed - sRNA 66 -- 72@LB@ |
| 41 |
0.001775 |
0.1444 |
bsu36710 |
fdhD |
-11.37 |
0.133163 |
186 -- 192 |
30 -- 36 |
protein FdhD |
|
_____________185_____193\n_____________|_______|\n5'-UCG...AUUGC_______AAGAG...CAG-3'\n______________GGAGGGG\n______________:||||||\n______________UCUCCCC\n3'-UUU...GACUA_______AACCC...AUA-5'\n_____________|_______|\n_____________37______29\n |
186 -- 192 |
30 -- 36 |
-13.1021 kcal/mol |
1.59974 kcal/mol |
0.133643 kcal/mol |
185 193@LB@ | |@LB@5'-UCG...AUUGC AAGAG...CAG-3'@LB@ GGAGGGG@LB@ :||||||@LB@ UCUCCCC@LB@3'-UUU...GACUA AACCC...AUA-5'@LB@ | |@LB@ 37 29@LB@@LB@@LB@Energy -11.37 kcal/mol@LB@Hybridization Energy -13.1021 kcal/mol@LB@Unfolding Energy - mRNA 1.59974 kcal/mol@LB@Unfolding Energy - sRNA 0.133643 kcal/mol@LB@@LB@Position - mRNA 186 -- 192@LB@Position - sRNA 30 -- 36@LB@Position Seed - mRNA 186 -- 192@LB@Position Seed - sRNA 30 -- 36@LB@ |
| 126 |
0.0111 |
0.2883 |
bsu16220 |
fliG |
-14.68 |
0.034861 |
264 -- 293 |
1 -- 29 |
flagellar motor switch protein FliG |
|
_____________263_____________________________294\n_____________|_______________________________|\n5'-GGG...UUUCC______U_____U_U__C_______G_____AAGCACU-3'\n______________UUGGGG__UAGA_G_GU_AGCUUCU_UCUAU\n______________||||||__:|||_|_||_|||||||_|||||\n______________AACCCC__GUCU_C_CA_UCGAAGA_AGAUA\n3'-UUU...UCCCC______UU______U__________G_____-5'\n_____________|______________________________|\n_____________30_____________________________1\n |
281 -- 287 |
7 -- 13 |
-31.0613 kcal/mol |
7.38869 kcal/mol |
8.9939 kcal/mol |
263 294@LB@ | |@LB@5'-GGG...UUUCC U U U C G AAGCACU-3'@LB@ UUGGGG UAGA G GU AGCUUCU UCUAU@LB@ |||||| :||| | || ||||||| |||||@LB@ AACCCC GUCU C CA UCGAAGA AGAUA@LB@3'-UUU...UCCCC UU U G -5'@LB@ | |@LB@ 30 1@LB@@LB@@LB@Energy -14.68 kcal/mol@LB@Hybridization Energy -31.0613 kcal/mol@LB@Unfolding Energy - mRNA 7.38869 kcal/mol@LB@Unfolding Energy - sRNA 8.9939 kcal/mol@LB@@LB@Position - mRNA 264 -- 293@LB@Position - sRNA 1 -- 29@LB@Position Seed - mRNA 281 -- 287@LB@Position Seed - sRNA 7 -- 13@LB@ |
