| 126 |
0.0111 |
0.2883 |
bsu16220 |
fliG |
-14.68 |
0.034861 |
264 -- 293 |
1 -- 29 |
flagellar motor switch protein FliG |
|
_____________263_____________________________294\n_____________|_______________________________|\n5'-GGG...UUUCC______U_____U_U__C_______G_____AAGCACU-3'\n______________UUGGGG__UAGA_G_GU_AGCUUCU_UCUAU\n______________||||||__:|||_|_||_|||||||_|||||\n______________AACCCC__GUCU_C_CA_UCGAAGA_AGAUA\n3'-UUU...UCCCC______UU______U__________G_____-5'\n_____________|______________________________|\n_____________30_____________________________1\n |
281 -- 287 |
7 -- 13 |
-31.0613 kcal/mol |
7.38869 kcal/mol |
8.9939 kcal/mol |
263 294@LB@ | |@LB@5'-GGG...UUUCC U U U C G AAGCACU-3'@LB@ UUGGGG UAGA G GU AGCUUCU UCUAU@LB@ |||||| :||| | || ||||||| |||||@LB@ AACCCC GUCU C CA UCGAAGA AGAUA@LB@3'-UUU...UCCCC UU U G -5'@LB@ | |@LB@ 30 1@LB@@LB@@LB@Energy -14.68 kcal/mol@LB@Hybridization Energy -31.0613 kcal/mol@LB@Unfolding Energy - mRNA 7.38869 kcal/mol@LB@Unfolding Energy - sRNA 8.9939 kcal/mol@LB@@LB@Position - mRNA 264 -- 293@LB@Position - sRNA 1 -- 29@LB@Position Seed - mRNA 281 -- 287@LB@Position Seed - sRNA 7 -- 13@LB@ |
| 158 |
0.01436 |
0.3008 |
bsu10130 |
hemH |
-12.69 |
0.080628 |
178 -- 227 |
6 -- 44 |
ferrochelatase |
|
_____________177____________________________________________________228\n_____________|______________________________________________________|\n5'-GAG...UAUCA____AUUAA______U__A_________U____AGAAAGAAAAUGG________GUGAU...GAA-3'\n______________GAUC_____AGAGGG_GU_____AACAG_GAGU_____________GGCUUCUC\n______________||||_____||||||_||_____|||||_||||_____________:|||||||\n______________CUAG_____UCUCCC_CA_____UUGUC_CUCA_____________UCGAAGAG\n3'-UUU...UAGAA____ACUA__________ACCCC_____U_________________________AGAUA-5'\n_____________|______________________________________________________|\n_____________45_____________________________________________________5\n |
220 -- 226 |
7 -- 13 |
-32.766 kcal/mol |
10.122 kcal/mol |
9.95356 kcal/mol |
177 228@LB@ | |@LB@5'-GAG...UAUCA AUUAA U A U AGAAAGAAAAUGG GUGAU...GAA-3'@LB@ GAUC AGAGGG GU AACAG GAGU GGCUUCUC@LB@ |||| |||||| || ||||| |||| :|||||||@LB@ CUAG UCUCCC CA UUGUC CUCA UCGAAGAG@LB@3'-UUU...UAGAA ACUA ACCCC U AGAUA-5'@LB@ | |@LB@ 45 5@LB@@LB@@LB@Energy -12.69 kcal/mol@LB@Hybridization Energy -32.766 kcal/mol@LB@Unfolding Energy - mRNA 10.122 kcal/mol@LB@Unfolding Energy - sRNA 9.95356 kcal/mol@LB@@LB@Position - mRNA 178 -- 227@LB@Position - sRNA 6 -- 44@LB@Position Seed - mRNA 220 -- 226@LB@Position Seed - sRNA 7 -- 13@LB@ |
| 22 |
0.0004167 |
0.06318 |
bsu07570 |
yflS |
-5.44 |
0.672400 |
163 -- 208 |
8 -- 27 |
malate transporter YflS |
|
_____________162____________________________________________209\n_____________|______________________________________________|\n5'-AUG...GAAAA_____U____AAACAAGUAUAUAG___GAGACCUAUUUA_______AGAAA...CUC-3'\n______________GGGGA_CGGA______________GAG____________UGGCUUC\n______________|||||_|:||______________|||____________|:|||||\n______________CCCCU_GUCU______________CUC____________AUCGAAG\n3'-UUU...CCCAA_____U________________________________________AGAGAUA-5'\n_____________|______________________________________________|\n_____________28_____________________________________________7\n |
202 -- 208 |
8 -- 14 |
-21.2785 kcal/mol |
9.2406 kcal/mol |
6.59627 kcal/mol |
162 209@LB@ | |@LB@5'-AUG...GAAAA U AAACAAGUAUAUAG GAGACCUAUUUA AGAAA...CUC-3'@LB@ GGGGA CGGA GAG UGGCUUC@LB@ ||||| |:|| ||| |:|||||@LB@ CCCCU GUCU CUC AUCGAAG@LB@3'-UUU...CCCAA U AGAGAUA-5'@LB@ | |@LB@ 28 7@LB@@LB@@LB@Energy -5.44 kcal/mol@LB@Hybridization Energy -21.2785 kcal/mol@LB@Unfolding Energy - mRNA 9.2406 kcal/mol@LB@Unfolding Energy - sRNA 6.59627 kcal/mol@LB@@LB@Position - mRNA 163 -- 208@LB@Position - sRNA 8 -- 27@LB@Position Seed - mRNA 202 -- 208@LB@Position Seed - sRNA 8 -- 14@LB@ |
| 33 |
0.001178 |
0.119 |
bsu14840 |
ylaN |
-15.06 |
0.029338 |
181 -- 208 |
8 -- 28 |
depletion of this protein in Bacillus subtilis results in defects in cell morphology; crystal structure of Staphylococcus protein shows homodimer; ligand binding protein |
|
_____________180__________________________209\n_____________|____________________________|\n5'-GAU...UCGCC______________AUACUUU_______AGAGA...AUA-3'\n______________UGGGGAACGGAGGG_______UGGCUUC\n______________||||||||:|||:|_______|:|||||\n______________ACCCCUUGUCUCUC_______AUCGAAG\n3'-UUU...CCCCA____________________________AGAGAUA-5'\n_____________|____________________________|\n_____________29___________________________7\n |
202 -- 208 |
8 -- 14 |
-32.8109 kcal/mol |
11.1547 kcal/mol |
6.59627 kcal/mol |
180 209@LB@ | |@LB@5'-GAU...UCGCC AUACUUU AGAGA...AUA-3'@LB@ UGGGGAACGGAGGG UGGCUUC@LB@ ||||||||:|||:| |:|||||@LB@ ACCCCUUGUCUCUC AUCGAAG@LB@3'-UUU...CCCCA AGAGAUA-5'@LB@ | |@LB@ 29 7@LB@@LB@@LB@Energy -15.06 kcal/mol@LB@Hybridization Energy -32.8109 kcal/mol@LB@Unfolding Energy - mRNA 11.1547 kcal/mol@LB@Unfolding Energy - sRNA 6.59627 kcal/mol@LB@@LB@Position - mRNA 181 -- 208@LB@Position - sRNA 8 -- 28@LB@Position Seed - mRNA 202 -- 208@LB@Position Seed - sRNA 8 -- 14@LB@ |
| 76 |
0.005654 |
0.2441 |
bsu14240 |
rok |
-14.05 |
0.045854 |
178 -- 222 |
9 -- 42 |
repressor rok |
|
_____________177______________________________________________223\n_____________|________________________________________________|\n5'-UUA...UUAAU______________ACAU__A_____GUUUAAUGAA____________UGCGC...UAU-3'\n______________UUUGAUAG_GGGGU____UG_GGAAU__________AGAGA__AGCUU\n______________|:||||||_|||||____||_||||:__________|||||__|||||\n______________AGACUAUC_CCCCA____AC_CCUUG__________UCUCU__UCGAA\n3'-UUU...GAACU________U___________C____________________CA_____GAGAGAUA-5'\n_____________|________________________________________________|\n_____________43_______________________________________________8\n |
179 -- 185 |
35 -- 41 |
-31.6296 kcal/mol |
7.67652 kcal/mol |
9.89852 kcal/mol |
177 223@LB@ | |@LB@5'-UUA...UUAAU ACAU A GUUUAAUGAA UGCGC...UAU-3'@LB@ UUUGAUAG GGGGU UG GGAAU AGAGA AGCUU@LB@ |:|||||| ||||| || ||||: ||||| |||||@LB@ AGACUAUC CCCCA AC CCUUG UCUCU UCGAA@LB@3'-UUU...GAACU U C CA GAGAGAUA-5'@LB@ | |@LB@ 43 8@LB@@LB@@LB@Energy -14.05 kcal/mol@LB@Hybridization Energy -31.6296 kcal/mol@LB@Unfolding Energy - mRNA 7.67652 kcal/mol@LB@Unfolding Energy - sRNA 9.89852 kcal/mol@LB@@LB@Position - mRNA 178 -- 222@LB@Position - sRNA 9 -- 42@LB@Position Seed - mRNA 179 -- 185@LB@Position Seed - sRNA 35 -- 41@LB@ |
| 151 |
0.01347 |
0.2966 |
bsu25570 |
comEC |
-9.44 |
0.254651 |
59 -- 89 |
9 -- 50 |
ComE operon protein 3 |
|
_____________58__________________________________________90\n_____________|___________________________________________|\n5'-CGC...GAAAU____G_________AA____________________AA_____UCAUU...UCU-3'\n______________GAUC_UUGAUCUGA______________AACAGAGA__AGCUU\n______________||||_|||||||||______________||||||||__|||||\n______________CUAG_AACUAGACU______________UUGUCUCU__UCGAA\n3'-UUU...AAAGC______________AUCUCCCCAACCCC________CA_____GAGAGAUA-5'\n_____________|___________________________________________|\n_____________51__________________________________________8\n |
76 -- 82 |
16 -- 22 |
-28.9501 kcal/mol |
9.55134 kcal/mol |
9.9565 kcal/mol |
58 90@LB@ | |@LB@5'-CGC...GAAAU G AA AA UCAUU...UCU-3'@LB@ GAUC UUGAUCUGA AACAGAGA AGCUU@LB@ |||| ||||||||| |||||||| |||||@LB@ CUAG AACUAGACU UUGUCUCU UCGAA@LB@3'-UUU...AAAGC AUCUCCCCAACCCC CA GAGAGAUA-5'@LB@ | |@LB@ 51 8@LB@@LB@@LB@Energy -9.44 kcal/mol@LB@Hybridization Energy -28.9501 kcal/mol@LB@Unfolding Energy - mRNA 9.55134 kcal/mol@LB@Unfolding Energy - sRNA 9.9565 kcal/mol@LB@@LB@Position - mRNA 59 -- 89@LB@Position - sRNA 9 -- 50@LB@Position Seed - mRNA 76 -- 82@LB@Position Seed - sRNA 16 -- 22@LB@ |
| 6 |
3.166e-05 |
0.01761 |
bsu12160 |
yjgC |
-18.77 |
0.004394 |
190 -- 206 |
10 -- 27 |
oxidoreductase |
bsu27220 bsu03310 |
_____________189________________207\n_____________|__________________|\n5'-UAA...AGAAA__________________GGCAA...UGC-3'\n______________GGGGAAUGGAGA_UGGCU\n______________||||||::||||_|:|||\n______________CCCCUUGUCUCU_AUCGA\n3'-UUU...CCCAA____________C_____AGAGA...AUA-5'\n_____________|__________________|\n_____________28_________________9\n |
192 -- 198 |
19 -- 25 |
-27.0798 kcal/mol |
2.28534 kcal/mol |
6.0284 kcal/mol |
189 207@LB@ | |@LB@5'-UAA...AGAAA GGCAA...UGC-3'@LB@ GGGGAAUGGAGA UGGCU@LB@ ||||||::|||| |:|||@LB@ CCCCUUGUCUCU AUCGA@LB@3'-UUU...CCCAA C AGAGA...AUA-5'@LB@ | |@LB@ 28 9@LB@@LB@@LB@Energy -18.77 kcal/mol@LB@Hybridization Energy -27.0798 kcal/mol@LB@Unfolding Energy - mRNA 2.28534 kcal/mol@LB@Unfolding Energy - sRNA 6.0284 kcal/mol@LB@@LB@Position - mRNA 190 -- 206@LB@Position - sRNA 10 -- 27@LB@Position Seed - mRNA 192 -- 198@LB@Position Seed - sRNA 19 -- 25@LB@ |
| 14 |
0.0002247 |
0.05257 |
bsu30160 |
ytcQ |
-17.33 |
0.009670 |
159 -- 223 |
10 -- 51 |
peptide ABC transporter substrate-binding protein |
|
_____________158__________________________________________________________________224\n_____________|____________________________________________________________________|\n5'-UUG...UGCUG___________AAAGGAUAAAGAAAUA___AAC________ACGA____A___AAAU___________UUUGA...GCA-3'\n______________GGAUCU__GUC________________UGA___GGAGGGGU____UGGG_AAC____GGAGGGU_GCU\n______________||||||__:||________________|||___:|||||||____||||_|||____:|||:||_|||\n______________CCUAGA__UAG________________ACU___UCUCCCCA____ACCC_UUG____UCUCUCA_CGA\n3'-UUU...AAAAG______AC______________________A__________________C______________U___AGAGA...AUA-5'\n_____________|____________________________________________________________________|\n_____________52___________________________________________________________________9\n |
214 -- 220 |
14 -- 20 |
-40.5 kcal/mol |
13.2168 kcal/mol |
9.95655 kcal/mol |
158 224@LB@ | |@LB@5'-UUG...UGCUG AAAGGAUAAAGAAAUA AAC ACGA A AAAU UUUGA...GCA-3'@LB@ GGAUCU GUC UGA GGAGGGGU UGGG AAC GGAGGGU GCU@LB@ |||||| :|| ||| :||||||| |||| ||| :|||:|| |||@LB@ CCUAGA UAG ACU UCUCCCCA ACCC UUG UCUCUCA CGA@LB@3'-UUU...AAAAG AC A C U AGAGA...AUA-5'@LB@ | |@LB@ 52 9@LB@@LB@@LB@Energy -17.33 kcal/mol@LB@Hybridization Energy -40.5 kcal/mol@LB@Unfolding Energy - mRNA 13.2168 kcal/mol@LB@Unfolding Energy - sRNA 9.95655 kcal/mol@LB@@LB@Position - mRNA 159 -- 223@LB@Position - sRNA 10 -- 51@LB@Position Seed - mRNA 214 -- 220@LB@Position Seed - sRNA 14 -- 20@LB@ |
| 45 |
0.002015 |
0.1494 |
bsu34040 |
yvfW |
-14.27 |
0.041807 |
34 -- 68 |
10 -- 49 |
lactate utilization protein B |
|
_____________33_______________________________________69\n_____________|________________________________________|\n5'-GCG...AAAAA___GA___G_________AAAC__________________GAUCG...GUC-3'\n______________GUC___AU_UG_UGGAGG_____GGGAGCAGAG_GU_GCU\n______________:||___||_||_|:||||_____||||:|||||_||_|||\n______________UAG___UA_AC_AUCUCC_____CCCUUGUCUC_CA_CGA\n3'-UUU...AAGCC___AAC__G__U______CCAAC__________U__U___AGAGA...AUA-5'\n_____________|________________________________________|\n_____________50_______________________________________9\n |
55 -- 61 |
19 -- 25 |
-34.7578 kcal/mol |
10.5343 kcal/mol |
9.9558 kcal/mol |
33 69@LB@ | |@LB@5'-GCG...AAAAA GA G AAAC GAUCG...GUC-3'@LB@ GUC AU UG UGGAGG GGGAGCAGAG GU GCU@LB@ :|| || || |:|||| ||||:||||| || |||@LB@ UAG UA AC AUCUCC CCCUUGUCUC CA CGA@LB@3'-UUU...AAGCC AAC G U CCAAC U U AGAGA...AUA-5'@LB@ | |@LB@ 50 9@LB@@LB@@LB@Energy -14.27 kcal/mol@LB@Hybridization Energy -34.7578 kcal/mol@LB@Unfolding Energy - mRNA 10.5343 kcal/mol@LB@Unfolding Energy - sRNA 9.9558 kcal/mol@LB@@LB@Position - mRNA 34 -- 68@LB@Position - sRNA 10 -- 49@LB@Position Seed - mRNA 55 -- 61@LB@Position Seed - sRNA 19 -- 25@LB@ |
| 57 |
0.003091 |
0.1809 |
bsu19720 |
yodR |
-13.42 |
0.059995 |
155 -- 217 |
11 -- 51 |
coenzyme A transferase subunit beta |
|
_____________154_________________________________________________________________218\n_____________|___________________________________________________________________|\n5'-GCU...ACCGG_______UG________________UACGAAGCGA____GUGAAGUGGAAAUGG__UU_________AGAAA...CCU-3'\n______________GGGUUUU___UUGA___GGGGGUUG__________GGGA_______________GC__GGGAGUAGC\n______________||:|:||___:|||___:|||||||__________||||_______________:|__|:|||||||\n______________CCUAGAA___GACU___UCCCCAAC__________CCCU_______________UG__CUCUCAUCG\n3'-UUU...AAAAG_______CUA____AUC_______________________________________U__________AAGAG...AUA-5'\n_____________|___________________________________________________________________|\n_____________52__________________________________________________________________10\n |
211 -- 217 |
11 -- 17 |
-37.5623 kcal/mol |
14.1868 kcal/mol |
9.95641 kcal/mol |
154 218@LB@ | |@LB@5'-GCU...ACCGG UG UACGAAGCGA GUGAAGUGGAAAUGG UU AGAAA...CCU-3'@LB@ GGGUUUU UUGA GGGGGUUG GGGA GC GGGAGUAGC@LB@ ||:|:|| :||| :||||||| |||| :| |:|||||||@LB@ CCUAGAA GACU UCCCCAAC CCCU UG CUCUCAUCG@LB@3'-UUU...AAAAG CUA AUC U AAGAG...AUA-5'@LB@ | |@LB@ 52 10@LB@@LB@@LB@Energy -13.42 kcal/mol@LB@Hybridization Energy -37.5623 kcal/mol@LB@Unfolding Energy - mRNA 14.1868 kcal/mol@LB@Unfolding Energy - sRNA 9.95641 kcal/mol@LB@@LB@Position - mRNA 155 -- 217@LB@Position - sRNA 11 -- 51@LB@Position Seed - mRNA 211 -- 217@LB@Position Seed - sRNA 11 -- 17@LB@ |
