125 |
0.01105 |
0.2883 |
bsu27350 |
yrrN |
-18.26 |
0.005831 |
285 -- 299 |
16 -- 30 |
protease YrrN |
|
_____________284_____________300\n_____________|_______________|\n5'-GGG...UUUUA_______________U-3'\n______________GUUGGGGAACAGAGA\n______________|||||||||||||||\n______________CAACCCCUUGUCUCU\n3'-UUU...CUCCC_______________CAUCG...AUA-5'\n_____________|_______________|\n_____________31______________15\n |
293 -- 299 |
16 -- 22 |
-28.5342 kcal/mol |
4.24145 kcal/mol |
6.02784 kcal/mol |
284 300@LB@ | |@LB@5'-GGG...UUUUA U-3'@LB@ GUUGGGGAACAGAGA@LB@ |||||||||||||||@LB@ CAACCCCUUGUCUCU@LB@3'-UUU...CUCCC CAUCG...AUA-5'@LB@ | |@LB@ 31 15@LB@@LB@@LB@Energy -18.26 kcal/mol@LB@Hybridization Energy -28.5342 kcal/mol@LB@Unfolding Energy - mRNA 4.24145 kcal/mol@LB@Unfolding Energy - sRNA 6.02784 kcal/mol@LB@@LB@Position - mRNA 285 -- 299@LB@Position - sRNA 16 -- 30@LB@Position Seed - mRNA 293 -- 299@LB@Position Seed - sRNA 16 -- 22@LB@ |
162 |
0.01461 |
0.3008 |
bsu28700 |
ysfE |
-18.20 |
0.006050 |
31 -- 59 |
26 -- 51 |
Evidence 5: No homology to any previously reported sequences |
bsu26940 |
_____________30____________________________60\n_____________|_____________________________|\n5'-AAG...UAGAA___CUA____AAA__CUG___________CAAUG...AAA-3'\n______________GGA___UUGA___UG___AGAGGGGUUGG\n______________|||___||||___||___|||||||||||\n______________CCU___AACU___AC___UCUCCCCAACC\n3'-UUU...AAAAG___AG_____AG___UA____________CCUUG...AUA-5'\n_____________|_____________________________|\n_____________52____________________________25\n |
53 -- 59 |
26 -- 32 |
-27.3955 kcal/mol |
8.22133 kcal/mol |
0.975822 kcal/mol |
30 60@LB@ | |@LB@5'-AAG...UAGAA CUA AAA CUG CAAUG...AAA-3'@LB@ GGA UUGA UG AGAGGGGUUGG@LB@ ||| |||| || |||||||||||@LB@ CCU AACU AC UCUCCCCAACC@LB@3'-UUU...AAAAG AG AG UA CCUUG...AUA-5'@LB@ | |@LB@ 52 25@LB@@LB@@LB@Energy -18.20 kcal/mol@LB@Hybridization Energy -27.3955 kcal/mol@LB@Unfolding Energy - mRNA 8.22133 kcal/mol@LB@Unfolding Energy - sRNA 0.975822 kcal/mol@LB@@LB@Position - mRNA 31 -- 59@LB@Position - sRNA 26 -- 51@LB@Position Seed - mRNA 53 -- 59@LB@Position Seed - sRNA 26 -- 32@LB@ |
14 |
0.0002247 |
0.05257 |
bsu30160 |
ytcQ |
-17.33 |
0.009670 |
159 -- 223 |
10 -- 51 |
peptide ABC transporter substrate-binding protein |
|
_____________158__________________________________________________________________224\n_____________|____________________________________________________________________|\n5'-UUG...UGCUG___________AAAGGAUAAAGAAAUA___AAC________ACGA____A___AAAU___________UUUGA...GCA-3'\n______________GGAUCU__GUC________________UGA___GGAGGGGU____UGGG_AAC____GGAGGGU_GCU\n______________||||||__:||________________|||___:|||||||____||||_|||____:|||:||_|||\n______________CCUAGA__UAG________________ACU___UCUCCCCA____ACCC_UUG____UCUCUCA_CGA\n3'-UUU...AAAAG______AC______________________A__________________C______________U___AGAGA...AUA-5'\n_____________|____________________________________________________________________|\n_____________52___________________________________________________________________9\n |
214 -- 220 |
14 -- 20 |
-40.5 kcal/mol |
13.2168 kcal/mol |
9.95655 kcal/mol |
158 224@LB@ | |@LB@5'-UUG...UGCUG AAAGGAUAAAGAAAUA AAC ACGA A AAAU UUUGA...GCA-3'@LB@ GGAUCU GUC UGA GGAGGGGU UGGG AAC GGAGGGU GCU@LB@ |||||| :|| ||| :||||||| |||| ||| :|||:|| |||@LB@ CCUAGA UAG ACU UCUCCCCA ACCC UUG UCUCUCA CGA@LB@3'-UUU...AAAAG AC A C U AGAGA...AUA-5'@LB@ | |@LB@ 52 9@LB@@LB@@LB@Energy -17.33 kcal/mol@LB@Hybridization Energy -40.5 kcal/mol@LB@Unfolding Energy - mRNA 13.2168 kcal/mol@LB@Unfolding Energy - sRNA 9.95655 kcal/mol@LB@@LB@Position - mRNA 159 -- 223@LB@Position - sRNA 10 -- 51@LB@Position Seed - mRNA 214 -- 220@LB@Position Seed - sRNA 14 -- 20@LB@ |
200 |
0.01989 |
0.3269 |
bsu30150 |
ytdP |
-13.03 |
0.070310 |
188 -- 210 |
28 -- 52 |
AraC family transcriptional regulator |
|
_____________187________________________211\n_____________|__________________________|\n5'-UUU...UGAAG_____G_UA______AAU________UUAUG...UAU-3'\n______________UGGAU_U_____UGA___GGGGGGUU\n______________:||||_|_____|||___|:||||||\n______________GCCUA_A_____ACU___CUCCCCAA\n3'-UUU...AAAAA_____G_ACUAG___AU_________CCCCU...AUA-5'\n_____________|__________________________|\n_____________53_________________________27\n |
204 -- 210 |
28 -- 34 |
-18.7355 kcal/mol |
4.72292 kcal/mol |
0.980555 kcal/mol |
187 211@LB@ | |@LB@5'-UUU...UGAAG G UA AAU UUAUG...UAU-3'@LB@ UGGAU U UGA GGGGGGUU@LB@ :|||| | ||| |:||||||@LB@ GCCUA A ACU CUCCCCAA@LB@3'-UUU...AAAAA G ACUAG AU CCCCU...AUA-5'@LB@ | |@LB@ 53 27@LB@@LB@@LB@Energy -13.03 kcal/mol@LB@Hybridization Energy -18.7355 kcal/mol@LB@Unfolding Energy - mRNA 4.72292 kcal/mol@LB@Unfolding Energy - sRNA 0.980555 kcal/mol@LB@@LB@Position - mRNA 188 -- 210@LB@Position - sRNA 28 -- 52@LB@Position Seed - mRNA 204 -- 210@LB@Position Seed - sRNA 28 -- 34@LB@ |
160 |
0.01451 |
0.3008 |
bsu30080 |
yteV |
-11.71 |
0.117611 |
279 -- 298 |
34 -- 53 |
sporulation protein cse60 |
|
_____________278__________________299\n_____________|____________________|\n5'-UUU...GGAUA_____GGAGCAG________UA-3'\n______________UCGGA_______CUGAUAGA\n______________|||||_______||||||||\n______________AGCCU_______GACUAUCU\n3'-UUU...AAAAA_____AGAACUA________CCCCA...AUA-5'\n_____________|____________________|\n_____________54___________________33\n |
292 -- 298 |
34 -- 40 |
-18.1644 kcal/mol |
5.47565 kcal/mol |
0.98171 kcal/mol |
278 299@LB@ | |@LB@5'-UUU...GGAUA GGAGCAG UA-3'@LB@ UCGGA CUGAUAGA@LB@ ||||| ||||||||@LB@ AGCCU GACUAUCU@LB@3'-UUU...AAAAA AGAACUA CCCCA...AUA-5'@LB@ | |@LB@ 54 33@LB@@LB@@LB@Energy -11.71 kcal/mol@LB@Hybridization Energy -18.1644 kcal/mol@LB@Unfolding Energy - mRNA 5.47565 kcal/mol@LB@Unfolding Energy - sRNA 0.98171 kcal/mol@LB@@LB@Position - mRNA 279 -- 298@LB@Position - sRNA 34 -- 53@LB@Position Seed - mRNA 292 -- 298@LB@Position Seed - sRNA 34 -- 40@LB@ |
114 |
0.009837 |
0.2871 |
bsu30580 |
ytmA |
-11.73 |
0.116519 |
193 -- 212 |
33 -- 52 |
peptidase YtmA |
|
_____________192____________________213\n_____________|______________________|\n5'-AGA...GGAGG___CU_________________AAAAG...UGG-3'\n______________CGG__GUUUUGAUU__GUAGAG\n______________|||__:|:|||||:__:|||||\n______________GCC__UAGAACUAG__UAUCUC\n3'-UUU...AAAAA______________AC______CCCAA...AUA-5'\n_____________|______________________|\n_____________53_____________________32\n |
200 -- 206 |
41 -- 47 |
-17.5653 kcal/mol |
4.85678 kcal/mol |
0.976367 kcal/mol |
192 213@LB@ | |@LB@5'-AGA...GGAGG CU AAAAG...UGG-3'@LB@ CGG GUUUUGAUU GUAGAG@LB@ ||| :|:|||||: :|||||@LB@ GCC UAGAACUAG UAUCUC@LB@3'-UUU...AAAAA AC CCCAA...AUA-5'@LB@ | |@LB@ 53 32@LB@@LB@@LB@Energy -11.73 kcal/mol@LB@Hybridization Energy -17.5653 kcal/mol@LB@Unfolding Energy - mRNA 4.85678 kcal/mol@LB@Unfolding Energy - sRNA 0.976367 kcal/mol@LB@@LB@Position - mRNA 193 -- 212@LB@Position - sRNA 33 -- 52@LB@Position Seed - mRNA 200 -- 206@LB@Position Seed - sRNA 41 -- 47@LB@ |
19 |
0.0003652 |
0.06216 |
bsu29920 |
ytmP |
-16.30 |
0.016289 |
3 -- 31 |
25 -- 51 |
phosphotransferase YtmP |
|
_____________2_____________________________32\n_____________|_____________________________|\n_________5'-AU_____GAACA______U__ACU_______ACAAU...GUA-3'\n______________GGGUU_____UUGAUA_GA___GGUUGGG\n______________||:|:_____:|||||_||___|||||||\n______________CCUAG_____GACUAU_CU___CCAACCC\n3'-UUU...AAAAG_____AACUA_________CC________CUUGU...AUA-5'\n_____________|_____________________________|\n_____________52____________________________24\n |
25 -- 31 |
25 -- 31 |
-23.4751 kcal/mol |
6.19942 kcal/mol |
0.976067 kcal/mol |
2 32@LB@ | |@LB@ 5'-AU GAACA U ACU ACAAU...GUA-3'@LB@ GGGUU UUGAUA GA GGUUGGG@LB@ ||:|: :||||| || |||||||@LB@ CCUAG GACUAU CU CCAACCC@LB@3'-UUU...AAAAG AACUA CC CUUGU...AUA-5'@LB@ | |@LB@ 52 24@LB@@LB@@LB@Energy -16.30 kcal/mol@LB@Hybridization Energy -23.4751 kcal/mol@LB@Unfolding Energy - mRNA 6.19942 kcal/mol@LB@Unfolding Energy - sRNA 0.976067 kcal/mol@LB@@LB@Position - mRNA 3 -- 31@LB@Position - sRNA 25 -- 51@LB@Position Seed - mRNA 25 -- 31@LB@Position Seed - sRNA 25 -- 31@LB@ |
173 |
0.01667 |
0.3152 |
bsu28970 |
ytxB |
-13.17 |
0.066474 |
182 -- 201 |
13 -- 34 |
tvp38/tmem64 family membrane protein YtxB |
|
_____________181____________________202\n_____________|______________________|\n5'-UGC...UUCAA_____AA_______U_______UGAAA...AAA-3'\n______________AGGGG____GGAAC_GAGGGUA\n______________|||||____|||||_|||:|||\n______________UCCCC____CCUUG_CUCUCAU\n3'-UUU...CUAUC_____AACC_____U_______CGAAG...AUA-5'\n_____________|______________________|\n_____________35_____________________12\n |
195 -- 201 |
13 -- 19 |
-25.067 kcal/mol |
2.85387 kcal/mol |
9.04315 kcal/mol |
181 202@LB@ | |@LB@5'-UGC...UUCAA AA U UGAAA...AAA-3'@LB@ AGGGG GGAAC GAGGGUA@LB@ ||||| ||||| |||:|||@LB@ UCCCC CCUUG CUCUCAU@LB@3'-UUU...CUAUC AACC U CGAAG...AUA-5'@LB@ | |@LB@ 35 12@LB@@LB@@LB@Energy -13.17 kcal/mol@LB@Hybridization Energy -25.067 kcal/mol@LB@Unfolding Energy - mRNA 2.85387 kcal/mol@LB@Unfolding Energy - sRNA 9.04315 kcal/mol@LB@@LB@Position - mRNA 182 -- 201@LB@Position - sRNA 13 -- 34@LB@Position Seed - mRNA 195 -- 201@LB@Position Seed - sRNA 13 -- 19@LB@ |
184 |
0.01795 |
0.3254 |
bsu30470 |
ytzC |
-13.40 |
0.060457 |
189 -- 197 |
28 -- 36 |
Evidence 4: Homologs of previously reported genes of unknown function |
|
_____________188_______198\n_____________|_________|\n5'-UUC...CAAGA_________ACUGU...AUU-3'\n______________GGAGGGGUU\n______________:||||||||\n______________UCUCCCCAA\n3'-UUU...GACUA_________CCCCU...AUA-5'\n_____________|_________|\n_____________37________27\n |
191 -- 197 |
28 -- 34 |
-16.1349 kcal/mol |
2.59994 kcal/mol |
0.134381 kcal/mol |
188 198@LB@ | |@LB@5'-UUC...CAAGA ACUGU...AUU-3'@LB@ GGAGGGGUU@LB@ :||||||||@LB@ UCUCCCCAA@LB@3'-UUU...GACUA CCCCU...AUA-5'@LB@ | |@LB@ 37 27@LB@@LB@@LB@Energy -13.40 kcal/mol@LB@Hybridization Energy -16.1349 kcal/mol@LB@Unfolding Energy - mRNA 2.59994 kcal/mol@LB@Unfolding Energy - sRNA 0.134381 kcal/mol@LB@@LB@Position - mRNA 189 -- 197@LB@Position - sRNA 28 -- 36@LB@Position Seed - mRNA 191 -- 197@LB@Position Seed - sRNA 28 -- 34@LB@ |
67 |
0.004159 |
0.2071 |
bsu31830 |
yueE |
-13.48 |
0.058566 |
169 -- 197 |
28 -- 51 |
phosphohydrolase YueE |
|
_____________168___________________________198\n_____________|_____________________________|\n5'-UAG...UGUUA___U___AAAAAU____AAA_________UCCAU...AUG-3'\n______________GGA_UCU______AUCU___GGAGGGGUU\n______________|||_|||______||||___:||||||||\n______________CCU_AGA______UAGA___UCUCCCCAA\n3'-UUU...AAAAG_______AC________CUA_________CCCCU...AUA-5'\n_____________|_____________________________|\n_____________52____________________________27\n |
191 -- 197 |
28 -- 34 |
-19.6632 kcal/mol |
5.21125 kcal/mol |
0.974859 kcal/mol |
168 198@LB@ | |@LB@5'-UAG...UGUUA U AAAAAU AAA UCCAU...AUG-3'@LB@ GGA UCU AUCU GGAGGGGUU@LB@ ||| ||| |||| :||||||||@LB@ CCU AGA UAGA UCUCCCCAA@LB@3'-UUU...AAAAG AC CUA CCCCU...AUA-5'@LB@ | |@LB@ 52 27@LB@@LB@@LB@Energy -13.48 kcal/mol@LB@Hybridization Energy -19.6632 kcal/mol@LB@Unfolding Energy - mRNA 5.21125 kcal/mol@LB@Unfolding Energy - sRNA 0.974859 kcal/mol@LB@@LB@Position - mRNA 169 -- 197@LB@Position - sRNA 28 -- 51@LB@Position Seed - mRNA 191 -- 197@LB@Position Seed - sRNA 28 -- 34@LB@ |