| 130 |
0.01149 |
0.2883 |
bsu02620 |
phoD |
-13.55 |
0.056825 |
174 -- 193 |
30 -- 50 |
alkaline phosphatase D |
|
_____________173____________________194\n_____________|______________________|\n5'-GCC...GAGAC____AA___G____G_______AUCUU...CGG-3'\n______________GAUC__UGA___GA_AGAGGGG\n______________||||__|||___||_|||||||\n______________CUAG__ACU___CU_UCUCCCC\n3'-UUU...AAAGC____A____AGA__A_______AACCC...AUA-5'\n_____________|______________________|\n_____________51_____________________29\n |
187 -- 193 |
30 -- 36 |
-18.9864 kcal/mol |
4.46268 kcal/mol |
0.974272 kcal/mol |
173 194@LB@ | |@LB@5'-GCC...GAGAC AA G G AUCUU...CGG-3'@LB@ GAUC UGA GA AGAGGGG@LB@ |||| ||| || |||||||@LB@ CUAG ACU CU UCUCCCC@LB@3'-UUU...AAAGC A AGA A AACCC...AUA-5'@LB@ | |@LB@ 51 29@LB@@LB@@LB@Energy -13.55 kcal/mol@LB@Hybridization Energy -18.9864 kcal/mol@LB@Unfolding Energy - mRNA 4.46268 kcal/mol@LB@Unfolding Energy - sRNA 0.974272 kcal/mol@LB@@LB@Position - mRNA 174 -- 193@LB@Position - sRNA 30 -- 50@LB@Position Seed - mRNA 187 -- 193@LB@Position Seed - sRNA 30 -- 36@LB@ |
| 83 |
0.006595 |
0.2588 |
bsu17210 |
pksN |
-11.93 |
0.108023 |
61 -- 115 |
29 -- 70 |
polyketide synthase PksN |
|
_____________60_______________________________________________________116\n_____________|________________________________________________________|\n5'-AGC...CAAGA____________GAAA__________AA__G_G__CAAAACAUC____A____A__AAAUC...UAU-3'\n______________GGUGGCGCUAGG_____UUGGAUUUU__GA_U_UG_________AUAG_AGGG_GU\n______________|||:||||:|:|_____|:||||:||__||_|_||_________||||_||||_||\n______________CCAUCGCGGUUC_____AGCCUAGAA__CU_A_AC_________UAUC_UCCC_CA\n3'-UUU...CGCCC____________AAAAA_______________G_______________________ACCCC...AUA-5'\n_____________|________________________________________________________|\n_____________71_______________________________________________________28\n |
79 -- 85 |
45 -- 51 |
-37.7722 kcal/mol |
10.06 kcal/mol |
15.7778 kcal/mol |
60 116@LB@ | |@LB@5'-AGC...CAAGA GAAA AA G G CAAAACAUC A A AAAUC...UAU-3'@LB@ GGUGGCGCUAGG UUGGAUUUU GA U UG AUAG AGGG GU@LB@ |||:||||:|:| |:||||:|| || | || |||| |||| ||@LB@ CCAUCGCGGUUC AGCCUAGAA CU A AC UAUC UCCC CA@LB@3'-UUU...CGCCC AAAAA G ACCCC...AUA-5'@LB@ | |@LB@ 71 28@LB@@LB@@LB@Energy -11.93 kcal/mol@LB@Hybridization Energy -37.7722 kcal/mol@LB@Unfolding Energy - mRNA 10.06 kcal/mol@LB@Unfolding Energy - sRNA 15.7778 kcal/mol@LB@@LB@Position - mRNA 61 -- 115@LB@Position - sRNA 29 -- 70@LB@Position Seed - mRNA 79 -- 85@LB@Position Seed - sRNA 45 -- 51@LB@ |
| 133 |
0.01175 |
0.2883 |
bsu11610 |
ppnK |
-12.45 |
0.088788 |
273 -- 294 |
32 -- 53 |
inorganic polyphosphate/ATP-NAD kinase 1 |
|
_____________272____________________295\n_____________|______________________|\n5'-CCA...AUUUA____________A___AACU__AUGAAA-3'\n______________UUGGAUUUUGAU_UGG____GG\n______________|:||||:|||||_||:____||\n______________AGCCUAGAACUA_ACU____CC\n3'-UUU...AAAAA____________G___AUCU__CCAAC...AUA-5'\n_____________|______________________|\n_____________54_____________________31\n |
278 -- 284 |
42 -- 48 |
-17.5759 kcal/mol |
4.14878 kcal/mol |
0.981755 kcal/mol |
272 295@LB@ | |@LB@5'-CCA...AUUUA A AACU AUGAAA-3'@LB@ UUGGAUUUUGAU UGG GG@LB@ |:||||:||||| ||: ||@LB@ AGCCUAGAACUA ACU CC@LB@3'-UUU...AAAAA G AUCU CCAAC...AUA-5'@LB@ | |@LB@ 54 31@LB@@LB@@LB@Energy -12.45 kcal/mol@LB@Hybridization Energy -17.5759 kcal/mol@LB@Unfolding Energy - mRNA 4.14878 kcal/mol@LB@Unfolding Energy - sRNA 0.981755 kcal/mol@LB@@LB@Position - mRNA 273 -- 294@LB@Position - sRNA 32 -- 53@LB@Position Seed - mRNA 278 -- 284@LB@Position Seed - sRNA 42 -- 48@LB@ |
| 147 |
0.013 |
0.2949 |
bsu12910 |
proG |
-10.46 |
0.183122 |
211 -- 241 |
23 -- 53 |
pyrroline-5-carboxylate reductase 3 |
|
_____________210________________________________242\n_____________|__________________________________|\n5'-UUC...ACAGA_____________G____U___CAGCA___C___UAUGA...UUG-3'\n______________UUGGAUU__GAUU_GAUA__GG_____UGG_GGA\n______________|:||||:__|||:_||||__||_____|||_|||\n______________AGCCUAG__CUAG_CUAU__CC_____ACC_CCU\n3'-UUU...AAAAA_______AA____A____CU__CCA_________UGUCU...AUA-5'\n_____________|__________________________________|\n_____________54_________________________________22\n |
211 -- 217 |
47 -- 53 |
-18.7228 kcal/mol |
7.27559 kcal/mol |
0.987321 kcal/mol |
210 242@LB@ | |@LB@5'-UUC...ACAGA G U CAGCA C UAUGA...UUG-3'@LB@ UUGGAUU GAUU GAUA GG UGG GGA@LB@ |:||||: |||: |||| || ||| |||@LB@ AGCCUAG CUAG CUAU CC ACC CCU@LB@3'-UUU...AAAAA AA A CU CCA UGUCU...AUA-5'@LB@ | |@LB@ 54 22@LB@@LB@@LB@Energy -10.46 kcal/mol@LB@Hybridization Energy -18.7228 kcal/mol@LB@Unfolding Energy - mRNA 7.27559 kcal/mol@LB@Unfolding Energy - sRNA 0.987321 kcal/mol@LB@@LB@Position - mRNA 211 -- 241@LB@Position - sRNA 23 -- 53@LB@Position Seed - mRNA 211 -- 217@LB@Position Seed - sRNA 47 -- 53@LB@ |
| 165 |
0.01546 |
0.3127 |
bsu02230 |
purT |
-12.11 |
0.100898 |
185 -- 195 |
30 -- 39 |
phosphoribosylglycinamide formyltransferase |
|
_____________184_________196\n_____________|___________|\n5'-GAU...GAACA___A_______CAAAG...UUG-3'\n______________GAU_GGAGGGG\n______________|||_:||||||\n______________CUA_UCUCCCC\n3'-UUU...CUAGA___________AACCC...AUA-5'\n_____________|___________|\n_____________40__________29\n |
189 -- 195 |
30 -- 36 |
-15.5568 kcal/mol |
2.66346 kcal/mol |
0.779184 kcal/mol |
184 196@LB@ | |@LB@5'-GAU...GAACA A CAAAG...UUG-3'@LB@ GAU GGAGGGG@LB@ ||| :||||||@LB@ CUA UCUCCCC@LB@3'-UUU...CUAGA AACCC...AUA-5'@LB@ | |@LB@ 40 29@LB@@LB@@LB@Energy -12.11 kcal/mol@LB@Hybridization Energy -15.5568 kcal/mol@LB@Unfolding Energy - mRNA 2.66346 kcal/mol@LB@Unfolding Energy - sRNA 0.779184 kcal/mol@LB@@LB@Position - mRNA 185 -- 195@LB@Position - sRNA 30 -- 39@LB@Position Seed - mRNA 189 -- 195@LB@Position Seed - sRNA 30 -- 36@LB@ |
| 194 |
0.01929 |
0.3269 |
bsu14860 |
pycA |
-10.87 |
0.159030 |
149 -- 193 |
23 -- 51 |
pyruvate carboxylase |
|
_____________148___________________________________________194\n_____________|_____________________________________________|\n5'-GGG...GGGAA____AUUCCGCUA_______UUAUAUUCCAUUC____AAG_____GAAAA...UUG-3'\n______________GGAU_________UGAUAGA_____________GGGU___GGGGA\n______________||||_________|||||||_____________||||___|||||\n______________CCUA_________ACUAUCU_____________CCCA___CCCCU\n3'-UUU...AAAAG____GAACUAG_________C________________A_______UGUCU...AUA-5'\n_____________|_____________________________________________|\n_____________52____________________________________________22\n |
162 -- 168 |
34 -- 40 |
-22.9068 kcal/mol |
11.0566 kcal/mol |
0.980049 kcal/mol |
148 194@LB@ | |@LB@5'-GGG...GGGAA AUUCCGCUA UUAUAUUCCAUUC AAG GAAAA...UUG-3'@LB@ GGAU UGAUAGA GGGU GGGGA@LB@ |||| ||||||| |||| |||||@LB@ CCUA ACUAUCU CCCA CCCCU@LB@3'-UUU...AAAAG GAACUAG C A UGUCU...AUA-5'@LB@ | |@LB@ 52 22@LB@@LB@@LB@Energy -10.87 kcal/mol@LB@Hybridization Energy -22.9068 kcal/mol@LB@Unfolding Energy - mRNA 11.0566 kcal/mol@LB@Unfolding Energy - sRNA 0.980049 kcal/mol@LB@@LB@Position - mRNA 149 -- 193@LB@Position - sRNA 23 -- 51@LB@Position Seed - mRNA 162 -- 168@LB@Position Seed - sRNA 34 -- 40@LB@ |
| 5 |
2.545e-05 |
0.01698 |
bsu22540 |
qcrC |
-19.98 |
0.002129 |
169 -- 196 |
23 -- 48 |
menaquinol-cytochrome c reductase cytochrome b/c subunit |
|
_____________168____________________________197\n_____________|______________________________|\n5'-AAC...UAAAC__________CGA___AA____A_______UGACA...AAA-3'\n______________UCUUGAUCUG___AUA__AGGG___GGGGA\n______________||||||||||___|||__||||___|||||\n______________AGAACUAGAC___UAU__UCCC___CCCCU\n3'-UUU...AGCCU________________C_____CAA_____UGUCU...AUA-5'\n_____________|______________________________|\n_____________49_____________________________22\n |
172 -- 178 |
39 -- 45 |
-27.164 kcal/mol |
6.20558 kcal/mol |
0.979889 kcal/mol |
168 197@LB@ | |@LB@5'-AAC...UAAAC CGA AA A UGACA...AAA-3'@LB@ UCUUGAUCUG AUA AGGG GGGGA@LB@ |||||||||| ||| |||| |||||@LB@ AGAACUAGAC UAU UCCC CCCCU@LB@3'-UUU...AGCCU C CAA UGUCU...AUA-5'@LB@ | |@LB@ 49 22@LB@@LB@@LB@Energy -19.98 kcal/mol@LB@Hybridization Energy -27.164 kcal/mol@LB@Unfolding Energy - mRNA 6.20558 kcal/mol@LB@Unfolding Energy - sRNA 0.979889 kcal/mol@LB@@LB@Position - mRNA 169 -- 196@LB@Position - sRNA 23 -- 48@LB@Position Seed - mRNA 172 -- 178@LB@Position Seed - sRNA 39 -- 45@LB@ |
| 157 |
0.01433 |
0.3008 |
bsu38150 |
qoxC |
-14.65 |
0.035334 |
274 -- 297 |
30 -- 53 |
quinol oxidase subunit 3 |
|
_____________273_______________________298\n_____________|_________________________|\n5'-ACC...UAUUC__________G____UUUU______CAG-3'\n______________UCGGGUUUUG_AUCU_____AGGGG\n______________||||:|:|||_||||_____|||||\n______________AGCCUAGAAC_UAGA_____UCCCC\n3'-UUU...AAAAA_______________CUAUC_____AACCC...AUA-5'\n_____________|_________________________|\n_____________54________________________29\n |
277 -- 283 |
44 -- 50 |
-24.1532 kcal/mol |
8.5194 kcal/mol |
0.985344 kcal/mol |
273 298@LB@ | |@LB@5'-ACC...UAUUC G UUUU CAG-3'@LB@ UCGGGUUUUG AUCU AGGGG@LB@ ||||:|:||| |||| |||||@LB@ AGCCUAGAAC UAGA UCCCC@LB@3'-UUU...AAAAA CUAUC AACCC...AUA-5'@LB@ | |@LB@ 54 29@LB@@LB@@LB@Energy -14.65 kcal/mol@LB@Hybridization Energy -24.1532 kcal/mol@LB@Unfolding Energy - mRNA 8.5194 kcal/mol@LB@Unfolding Energy - sRNA 0.985344 kcal/mol@LB@@LB@Position - mRNA 274 -- 297@LB@Position - sRNA 30 -- 53@LB@Position Seed - mRNA 277 -- 283@LB@Position Seed - sRNA 44 -- 50@LB@ |
| 29 |
0.0009972 |
0.1113 |
bsu38140 |
qoxD |
-9.49 |
0.251109 |
150 -- 190 |
24 -- 51 |
quinol oxidase subunit 4 |
|
_____________149_______________________________________191\n_____________|_________________________________________|\n5'-UUU...UGUAU_______C____UUAC___UGUCUAUCUCAU___A______GGUCU...CAG-3'\n______________GGAUUUU_AUCU____AGG____________GGG_UUGGGG\n______________||||:||_||||____||:____________|||_||||||\n______________CCUAGAA_UAGA____UCU____________CCC_AACCCC\n3'-UUU...AAAAG_______C____CUA___________________C______UUGUC...AUA-5'\n_____________|_________________________________________|\n_____________52________________________________________23\n |
150 -- 156 |
45 -- 51 |
-23.5355 kcal/mol |
13.0692 kcal/mol |
0.978921 kcal/mol |
149 191@LB@ | |@LB@5'-UUU...UGUAU C UUAC UGUCUAUCUCAU A GGUCU...CAG-3'@LB@ GGAUUUU AUCU AGG GGG UUGGGG@LB@ ||||:|| |||| ||: ||| ||||||@LB@ CCUAGAA UAGA UCU CCC AACCCC@LB@3'-UUU...AAAAG C CUA C UUGUC...AUA-5'@LB@ | |@LB@ 52 23@LB@@LB@@LB@Energy -9.49 kcal/mol@LB@Hybridization Energy -23.5355 kcal/mol@LB@Unfolding Energy - mRNA 13.0692 kcal/mol@LB@Unfolding Energy - sRNA 0.978921 kcal/mol@LB@@LB@Position - mRNA 150 -- 190@LB@Position - sRNA 24 -- 51@LB@Position Seed - mRNA 150 -- 156@LB@Position Seed - sRNA 45 -- 51@LB@ |
| 88 |
0.006855 |
0.2588 |
bsu03770 |
rapC |
-14.27 |
0.041792 |
179 -- 211 |
12 -- 42 |
response regulator aspartate phosphatase C |
|
_____________178_______________________________212\n_____________|_________________________________|\n5'-UCA...CAGUU______G____A____GAA______A_______GGUAA...UAA-3'\n______________UUUGAU_GGAG_GGGU___GGAAUG_AGAGUGG\n______________|:||||_:|||_||||___||||::_|||||:|\n______________AGACUA_UCUC_CCCA___CCUUGU_UCUCAUC\n3'-UUU...GAACU________________ACC______C_______GAAGA...AUA-5'\n_____________|_________________________________|\n_____________43________________________________11\n |
205 -- 211 |
12 -- 18 |
-33.0113 kcal/mol |
8.84839 kcal/mol |
9.89449 kcal/mol |
178 212@LB@ | |@LB@5'-UCA...CAGUU G A GAA A GGUAA...UAA-3'@LB@ UUUGAU GGAG GGGU GGAAUG AGAGUGG@LB@ |:|||| :||| |||| ||||:: |||||:|@LB@ AGACUA UCUC CCCA CCUUGU UCUCAUC@LB@3'-UUU...GAACU ACC C GAAGA...AUA-5'@LB@ | |@LB@ 43 11@LB@@LB@@LB@Energy -14.27 kcal/mol@LB@Hybridization Energy -33.0113 kcal/mol@LB@Unfolding Energy - mRNA 8.84839 kcal/mol@LB@Unfolding Energy - sRNA 9.89449 kcal/mol@LB@@LB@Position - mRNA 179 -- 211@LB@Position - sRNA 12 -- 42@LB@Position Seed - mRNA 205 -- 211@LB@Position Seed - sRNA 12 -- 18@LB@ |
