| 6 |
0.000543 |
0.07439 |
ct_280 |
nqr4 |
-8.45 |
0.067322 |
89 -- 131 |
2 -- 35 |
Na(+)-translocating NADH-quinone reductase subunit D |
|
_____________88___________________________________________132\n_____________|____________________________________________|\n5'-GAC...GAAUU__________C___GACUUGUA_________CC_______UU__CUCAU...CGG-3'\n______________UCAGGAGCUA_UUU________AUGGUGUUA__GAAU_CC__CU\n______________||||:|||||_|::________||||:||||__||||_||__||\n______________AGUCUUCGAU_AGG________UACCGCAAU__CUUA_GG__GA\n3'-UUU...AUCUC__________A__________________________U__UU__A-5'\n_____________|____________________________________________|\n_____________36___________________________________________1\n |
113 -- 119 |
13 -- 19 |
-28.603 kcal/mol |
11.5634 kcal/mol |
8.59199 kcal/mol |
88 132@LB@ | |@LB@5'-GAC...GAAUU C GACUUGUA CC UU CUCAU...CGG-3'@LB@ UCAGGAGCUA UUU AUGGUGUUA GAAU CC CU@LB@ ||||:||||| |:: ||||:|||| |||| || ||@LB@ AGUCUUCGAU AGG UACCGCAAU CUUA GG GA@LB@3'-UUU...AUCUC A U UU A-5'@LB@ | |@LB@ 36 1@LB@@LB@@LB@Energy -8.45 kcal/mol@LB@Hybridization Energy -28.603 kcal/mol@LB@Unfolding Energy - mRNA 11.5634 kcal/mol@LB@Unfolding Energy - sRNA 8.59199 kcal/mol@LB@@LB@Position - mRNA 89 -- 131@LB@Position - sRNA 2 -- 35@LB@Position Seed - mRNA 113 -- 119@LB@Position Seed - sRNA 13 -- 19@LB@ |
| 191 |
0.08461 |
0.363 |
ct_112 |
pepF |
-2.97 |
0.715117 |
121 -- 127 |
54 -- 60 |
oligoendopeptidase F |
|
_____________120_____128\n_____________|_______|\n5'-UCU...UCUCU_______ACUGG...AAG-3'\n______________UCCCCUU\n______________|||||::\n______________AGGGGGG\n3'-UUU...ACUGA_______ACACA...GAA-5'\n_____________|_______|\n_____________61______53\n |
121 -- 127 |
54 -- 60 |
-10.8708 kcal/mol |
1.46061 kcal/mol |
6.44182 kcal/mol |
120 128@LB@ | |@LB@5'-UCU...UCUCU ACUGG...AAG-3'@LB@ UCCCCUU@LB@ |||||::@LB@ AGGGGGG@LB@3'-UUU...ACUGA ACACA...GAA-5'@LB@ | |@LB@ 61 53@LB@@LB@@LB@Energy -2.97 kcal/mol@LB@Hybridization Energy -10.8708 kcal/mol@LB@Unfolding Energy - mRNA 1.46061 kcal/mol@LB@Unfolding Energy - sRNA 6.44182 kcal/mol@LB@@LB@Position - mRNA 121 -- 127@LB@Position - sRNA 54 -- 60@LB@Position Seed - mRNA 121 -- 127@LB@Position Seed - sRNA 54 -- 60@LB@ |
| 1 |
6.997e-05 |
0.03358 |
ct_198 |
oppA_3 |
-8.59 |
0.062291 |
189 -- 206 |
17 -- 33 |
oligopeptide ABC transporter substrate-binding protein |
|
_____________188________________207\n_____________|__________________|\n5'-AAA...UCUAA______C________C__AAGAU...CUC-3'\n______________GGAGGU_AUUCCAUG_GC\n______________:||:|:_||||||||_||\n______________UCUUCG_UAAGGUAC_CG\n3'-UUU...CUCAG______A___________CAAUC...GAA-5'\n_____________|__________________|\n_____________34_________________16\n |
197 -- 203 |
19 -- 25 |
-19.6111 kcal/mol |
6.04348 kcal/mol |
4.97804 kcal/mol |
188 207@LB@ | |@LB@5'-AAA...UCUAA C C AAGAU...CUC-3'@LB@ GGAGGU AUUCCAUG GC@LB@ :||:|: |||||||| ||@LB@ UCUUCG UAAGGUAC CG@LB@3'-UUU...CUCAG A CAAUC...GAA-5'@LB@ | |@LB@ 34 16@LB@@LB@@LB@Energy -8.59 kcal/mol@LB@Hybridization Energy -19.6111 kcal/mol@LB@Unfolding Energy - mRNA 6.04348 kcal/mol@LB@Unfolding Energy - sRNA 4.97804 kcal/mol@LB@@LB@Position - mRNA 189 -- 206@LB@Position - sRNA 17 -- 33@LB@Position Seed - mRNA 197 -- 203@LB@Position Seed - sRNA 19 -- 25@LB@ |
| 129 |
0.0523 |
0.3262 |
ct_872 |
pmpH |
-6.76 |
0.162049 |
85 -- 103 |
18 -- 34 |
outer membrane protein PmpH |
|
_____________84__________________104\n_____________|___________________|\n5'-AGA...CAAUA_______A___GG______AAGAU...AUG-3'\n______________UAGAAGU_UAU__CCAUGG\n______________:|||||:_|||__||||||\n______________GUCUUCG_AUA__GGUACC\n3'-UUU...UCUCA___________A_______GCAAU...GAA-5'\n_____________|___________________|\n_____________35__________________17\n |
85 -- 91 |
28 -- 34 |
-16.9306 kcal/mol |
5.18888 kcal/mol |
4.97803 kcal/mol |
84 104@LB@ | |@LB@5'-AGA...CAAUA A GG AAGAU...AUG-3'@LB@ UAGAAGU UAU CCAUGG@LB@ :|||||: ||| ||||||@LB@ GUCUUCG AUA GGUACC@LB@3'-UUU...UCUCA A GCAAU...GAA-5'@LB@ | |@LB@ 35 17@LB@@LB@@LB@Energy -6.76 kcal/mol@LB@Hybridization Energy -16.9306 kcal/mol@LB@Unfolding Energy - mRNA 5.18888 kcal/mol@LB@Unfolding Energy - sRNA 4.97803 kcal/mol@LB@@LB@Position - mRNA 85 -- 103@LB@Position - sRNA 18 -- 34@LB@Position Seed - mRNA 85 -- 91@LB@Position Seed - sRNA 28 -- 34@LB@ |
| 63 |
0.02436 |
0.29 |
ct_270 |
pbp3 |
-9.04 |
0.048476 |
131 -- 156 |
5 -- 34 |
penicillin-binding protein |
|
_____________130_____________________________157\n_____________|_______________________________|\n5'-UAA...UGUUG____U____U____UCC______________GUAUC...GAG-3'\n______________CAGA_AGCU_UUCU________AGAAUACCA\n______________||||_||||_|||:________|||||||||\n______________GUCU_UCGA_AAGG________UCUUAUGGU\n3'-UUU...UCUCA_________U____UACCGCAA_________UGAA-5'\n_____________|_______________________________|\n_____________35______________________________4\n |
149 -- 155 |
6 -- 12 |
-21.654 kcal/mol |
4.02029 kcal/mol |
8.59194 kcal/mol |
130 157@LB@ | |@LB@5'-UAA...UGUUG U U UCC GUAUC...GAG-3'@LB@ CAGA AGCU UUCU AGAAUACCA@LB@ |||| |||| |||: |||||||||@LB@ GUCU UCGA AAGG UCUUAUGGU@LB@3'-UUU...UCUCA U UACCGCAA UGAA-5'@LB@ | |@LB@ 35 4@LB@@LB@@LB@Energy -9.04 kcal/mol@LB@Hybridization Energy -21.654 kcal/mol@LB@Unfolding Energy - mRNA 4.02029 kcal/mol@LB@Unfolding Energy - sRNA 8.59194 kcal/mol@LB@@LB@Position - mRNA 131 -- 156@LB@Position - sRNA 5 -- 34@LB@Position Seed - mRNA 149 -- 155@LB@Position Seed - sRNA 6 -- 12@LB@ |
| 3 |
0.0003482 |
0.07439 |
ct_023 |
prfA |
-10.22 |
0.024627 |
158 -- 204 |
18 -- 56 |
peptide chain release factor |
|
_____________157_____________________________________________205\n_____________|_______________________________________________|\n5'-GAA...CUGGU______UAG_G____________AAAGG______AAGUCG_______AAAUA...CGC-3'\n______________CUUUGU___A_AGAUACUAGAGU_____CAGAAG______UUCAUGG\n______________|::|||___|_|:|:||||||||_____||||||______|:|||||\n______________GGGACA___U_UUUGUGAUCUCA_____GUCUUC______AGGUACC\n3'-UUU...AAGGG______CA__G_______________________GAUA_________GCAAU...GAA-5'\n_____________|_______________________________________________|\n_____________57______________________________________________17\n |
198 -- 204 |
18 -- 24 |
-35.7937 kcal/mol |
12.6341 kcal/mol |
12.9359 kcal/mol |
157 205@LB@ | |@LB@5'-GAA...CUGGU UAG G AAAGG AAGUCG AAAUA...CGC-3'@LB@ CUUUGU A AGAUACUAGAGU CAGAAG UUCAUGG@LB@ |::||| | |:|:|||||||| |||||| |:|||||@LB@ GGGACA U UUUGUGAUCUCA GUCUUC AGGUACC@LB@3'-UUU...AAGGG CA G GAUA GCAAU...GAA-5'@LB@ | |@LB@ 57 17@LB@@LB@@LB@Energy -10.22 kcal/mol@LB@Hybridization Energy -35.7937 kcal/mol@LB@Unfolding Energy - mRNA 12.6341 kcal/mol@LB@Unfolding Energy - sRNA 12.9359 kcal/mol@LB@@LB@Position - mRNA 158 -- 204@LB@Position - sRNA 18 -- 56@LB@Position Seed - mRNA 198 -- 204@LB@Position Seed - sRNA 18 -- 24@LB@ |
| 186 |
0.08332 |
0.363 |
ct_811 |
plsX |
-5.83 |
0.252304 |
163 -- 171 |
79 -- 87 |
phosphate acyltransferase |
|
_____________162_______172\n_____________|_________|\n5'-GGC...GUUAU_________GAAGU...AAC-3'\n______________UACGGUUGA\n______________|||||:|:|\n______________AUGCCGAUU\n3'-UUU...CCUCU_________GAGGU...GAA-5'\n_____________|_________|\n_____________88________78\n |
165 -- 171 |
79 -- 85 |
-10.158 kcal/mol |
3.22704 kcal/mol |
1.09752 kcal/mol |
162 172@LB@ | |@LB@5'-GGC...GUUAU GAAGU...AAC-3'@LB@ UACGGUUGA@LB@ |||||:|:|@LB@ AUGCCGAUU@LB@3'-UUU...CCUCU GAGGU...GAA-5'@LB@ | |@LB@ 88 78@LB@@LB@@LB@Energy -5.83 kcal/mol@LB@Hybridization Energy -10.158 kcal/mol@LB@Unfolding Energy - mRNA 3.22704 kcal/mol@LB@Unfolding Energy - sRNA 1.09752 kcal/mol@LB@@LB@Position - mRNA 163 -- 171@LB@Position - sRNA 79 -- 87@LB@Position Seed - mRNA 165 -- 171@LB@Position Seed - sRNA 79 -- 85@LB@ |
| 143 |
0.05698 |
0.3262 |
ct_451 |
cdsA |
-5.69 |
0.268983 |
146 -- 169 |
3 -- 34 |
phosphatidate cytidylyltransferase |
|
_____________145______________________________170\n_____________|________________________________|\n5'-GAC...CUUGC_______G___AAAAC________________AACGA...GUA-3'\n______________UAGAAGC_AUU_____________AUACCAAC\n______________:||||||_|||_____________||||||||\n______________GUCUUCG_UAA_____________UAUGGUUG\n3'-UUU...UCUCA_______A___GGUACCGCAAUCU________AA-5'\n_____________|________________________________|\n_____________35_______________________________2\n |
163 -- 169 |
3 -- 9 |
-16.5797 kcal/mol |
2.2962 kcal/mol |
8.59197 kcal/mol |
145 170@LB@ | |@LB@5'-GAC...CUUGC G AAAAC AACGA...GUA-3'@LB@ UAGAAGC AUU AUACCAAC@LB@ :|||||| ||| ||||||||@LB@ GUCUUCG UAA UAUGGUUG@LB@3'-UUU...UCUCA A GGUACCGCAAUCU AA-5'@LB@ | |@LB@ 35 2@LB@@LB@@LB@Energy -5.69 kcal/mol@LB@Hybridization Energy -16.5797 kcal/mol@LB@Unfolding Energy - mRNA 2.2962 kcal/mol@LB@Unfolding Energy - sRNA 8.59197 kcal/mol@LB@@LB@Position - mRNA 146 -- 169@LB@Position - sRNA 3 -- 34@LB@Position Seed - mRNA 163 -- 169@LB@Position Seed - sRNA 3 -- 9@LB@ |
| 168 |
0.07022 |
0.3436 |
ct_336 |
ptsI |
-3.01 |
0.707290 |
114 -- 124 |
23 -- 33 |
phosphoenolpyruvate-protein phosphotransferase |
|
_____________113_________125\n_____________|___________|\n5'-GUU...GGCGA__UU_______AUAUA...UGU-3'\n______________GG__GCUGUUC\n______________:|__|||:|||\n______________UC__CGAUAAG\n3'-UUU...CUCAG__UU_______GUACC...GAA-5'\n_____________|___________|\n_____________34__________22\n |
118 -- 124 |
23 -- 29 |
-10.9545 kcal/mol |
3.2189 kcal/mol |
4.72321 kcal/mol |
113 125@LB@ | |@LB@5'-GUU...GGCGA UU AUAUA...UGU-3'@LB@ GG GCUGUUC@LB@ :| |||:|||@LB@ UC CGAUAAG@LB@3'-UUU...CUCAG UU GUACC...GAA-5'@LB@ | |@LB@ 34 22@LB@@LB@@LB@Energy -3.01 kcal/mol@LB@Hybridization Energy -10.9545 kcal/mol@LB@Unfolding Energy - mRNA 3.2189 kcal/mol@LB@Unfolding Energy - sRNA 4.72321 kcal/mol@LB@@LB@Position - mRNA 114 -- 124@LB@Position - sRNA 23 -- 33@LB@Position Seed - mRNA 118 -- 124@LB@Position Seed - sRNA 23 -- 29@LB@ |
| 93 |
0.03342 |
0.2954 |
ct_815 |
mrsA_2 |
-4.95 |
0.370159 |
203 -- 227 |
23 -- 45 |
phosphoglucosamine mutase |
|
_____________202_______________________228\n_____________|_________________________|\n5'-UAC...GCAAU_____GU__U__G___C________GGAAC...AGG-3'\n______________GACAC__GA_GU_AGA_AGCUAUUC\n______________:||||__||_||_|||_||||||||\n______________UUGUG__CU_CA_UCU_UCGAUAAG\n3'-UUU...CAUGU_____AU_____G____________GUACC...GAA-5'\n_____________|_________________________|\n_____________46________________________22\n |
221 -- 227 |
23 -- 29 |
-22.8159 kcal/mol |
6.25755 kcal/mol |
11.6121 kcal/mol |
202 228@LB@ | |@LB@5'-UAC...GCAAU GU U G C GGAAC...AGG-3'@LB@ GACAC GA GU AGA AGCUAUUC@LB@ :|||| || || ||| ||||||||@LB@ UUGUG CU CA UCU UCGAUAAG@LB@3'-UUU...CAUGU AU G GUACC...GAA-5'@LB@ | |@LB@ 46 22@LB@@LB@@LB@Energy -4.95 kcal/mol@LB@Hybridization Energy -22.8159 kcal/mol@LB@Unfolding Energy - mRNA 6.25755 kcal/mol@LB@Unfolding Energy - sRNA 11.6121 kcal/mol@LB@@LB@Position - mRNA 203 -- 227@LB@Position - sRNA 23 -- 45@LB@Position Seed - mRNA 221 -- 227@LB@Position Seed - sRNA 23 -- 29@LB@ |
