97 |
0.03496 |
0.2959 |
ct_539 |
trxA |
-6.38 |
0.195495 |
87 -- 94 |
80 -- 87 |
thioredoxin |
|
_____________86_______95\n_____________|________|\n5'-AUG...GAGGU________ACUGG...UGC-3'\n______________UAUGGCUA\n______________||:|||||\n______________AUGCCGAU\n3'-UUU...CCUCU________UGAGG...GAA-5'\n_____________|________|\n_____________88_______79\n |
88 -- 94 |
80 -- 86 |
-10.4005 kcal/mol |
2.9242 kcal/mol |
1.09752 kcal/mol |
86 95@LB@ | |@LB@5'-AUG...GAGGU ACUGG...UGC-3'@LB@ UAUGGCUA@LB@ ||:|||||@LB@ AUGCCGAU@LB@3'-UUU...CCUCU UGAGG...GAA-5'@LB@ | |@LB@ 88 79@LB@@LB@@LB@Energy -6.38 kcal/mol@LB@Hybridization Energy -10.4005 kcal/mol@LB@Unfolding Energy - mRNA 2.9242 kcal/mol@LB@Unfolding Energy - sRNA 1.09752 kcal/mol@LB@@LB@Position - mRNA 87 -- 94@LB@Position - sRNA 80 -- 87@LB@Position Seed - mRNA 88 -- 94@LB@Position Seed - sRNA 80 -- 86@LB@ |
134 |
0.05433 |
0.3262 |
ct_581 |
thrS |
-7.17 |
0.132364 |
52 -- 64 |
21 -- 33 |
threonine--tRNA ligase |
|
_____________51___________65\n_____________|____________|\n5'-AAA...CUAAA_______CC___GAACU...CAG-3'\n______________AGAAGCU__UCC\n______________|||||||__|||\n______________UCUUCGA__AGG\n3'-UUU...CUCAG_______UA___UACCG...GAA-5'\n_____________|____________|\n_____________34___________20\n |
52 -- 58 |
27 -- 33 |
-13.855 kcal/mol |
1.83194 kcal/mol |
4.72509 kcal/mol |
51 65@LB@ | |@LB@5'-AAA...CUAAA CC GAACU...CAG-3'@LB@ AGAAGCU UCC@LB@ ||||||| |||@LB@ UCUUCGA AGG@LB@3'-UUU...CUCAG UA UACCG...GAA-5'@LB@ | |@LB@ 34 20@LB@@LB@@LB@Energy -7.17 kcal/mol@LB@Hybridization Energy -13.855 kcal/mol@LB@Unfolding Energy - mRNA 1.83194 kcal/mol@LB@Unfolding Energy - sRNA 4.72509 kcal/mol@LB@@LB@Position - mRNA 52 -- 64@LB@Position - sRNA 21 -- 33@LB@Position Seed - mRNA 52 -- 58@LB@Position Seed - sRNA 27 -- 33@LB@ |
182 |
0.07944 |
0.3588 |
ct_320 |
nusG |
-7.37 |
0.119406 |
230 -- 236 |
81 -- 87 |
transcription termination/antitermination protein NusG |
|
_____________229_____237\n_____________|_______|\n5'-AAC...GUUUU_______CAAGA...UUA-3'\n______________UACGGCU\n______________|||||||\n______________AUGCCGA\n3'-UUU...CCUCU_______UUGAG...GAA-5'\n_____________|_______|\n_____________88______80\n |
230 -- 236 |
81 -- 87 |
-10.814 kcal/mol |
2.34788 kcal/mol |
1.09752 kcal/mol |
229 237@LB@ | |@LB@5'-AAC...GUUUU CAAGA...UUA-3'@LB@ UACGGCU@LB@ |||||||@LB@ AUGCCGA@LB@3'-UUU...CCUCU UUGAG...GAA-5'@LB@ | |@LB@ 88 80@LB@@LB@@LB@Energy -7.37 kcal/mol@LB@Hybridization Energy -10.814 kcal/mol@LB@Unfolding Energy - mRNA 2.34788 kcal/mol@LB@Unfolding Energy - sRNA 1.09752 kcal/mol@LB@@LB@Position - mRNA 230 -- 236@LB@Position - sRNA 81 -- 87@LB@Position Seed - mRNA 230 -- 236@LB@Position Seed - sRNA 81 -- 87@LB@ |
101 |
0.03758 |
0.3036 |
ct_457 |
N/A |
-2.86 |
0.734073 |
54 -- 60 |
80 -- 86 |
transcriptional regulator |
|
_____________53______61\n_____________|_______|\n5'-GGA...GUAAG_______GGUUA...UCU-3'\n______________AUGGUUG\n______________|:||:|:\n______________UGCCGAU\n3'-UUU...CUCUA_______UGAGG...GAA-5'\n_____________|_______|\n_____________87______79\n |
54 -- 60 |
80 -- 86 |
-6.17108 kcal/mol |
2.2465 kcal/mol |
1.06449 kcal/mol |
53 61@LB@ | |@LB@5'-GGA...GUAAG GGUUA...UCU-3'@LB@ AUGGUUG@LB@ |:||:|:@LB@ UGCCGAU@LB@3'-UUU...CUCUA UGAGG...GAA-5'@LB@ | |@LB@ 87 79@LB@@LB@@LB@Energy -2.86 kcal/mol@LB@Hybridization Energy -6.17108 kcal/mol@LB@Unfolding Energy - mRNA 2.2465 kcal/mol@LB@Unfolding Energy - sRNA 1.06449 kcal/mol@LB@@LB@Position - mRNA 54 -- 60@LB@Position - sRNA 80 -- 86@LB@Position Seed - mRNA 54 -- 60@LB@Position Seed - sRNA 80 -- 86@LB@ |
88 |
0.03104 |
0.29 |
ct_766 |
miaA |
-2.38 |
0.813549 |
82 -- 88 |
27 -- 33 |
tRNA dimethylallyltransferase |
|
_____________81______89\n_____________|_______|\n5'-AUA...UAAUG_______UUGUA...UGU-3'\n______________GGAAGCU\n______________:||||||\n______________UCUUCGA\n3'-UUU...CUCAG_______UAAGG...GAA-5'\n_____________|_______|\n_____________34______26\n |
82 -- 88 |
27 -- 33 |
-8.83329 kcal/mol |
1.86027 kcal/mol |
4.59825 kcal/mol |
81 89@LB@ | |@LB@5'-AUA...UAAUG UUGUA...UGU-3'@LB@ GGAAGCU@LB@ :||||||@LB@ UCUUCGA@LB@3'-UUU...CUCAG UAAGG...GAA-5'@LB@ | |@LB@ 34 26@LB@@LB@@LB@Energy -2.38 kcal/mol@LB@Hybridization Energy -8.83329 kcal/mol@LB@Unfolding Energy - mRNA 1.86027 kcal/mol@LB@Unfolding Energy - sRNA 4.59825 kcal/mol@LB@@LB@Position - mRNA 82 -- 88@LB@Position - sRNA 27 -- 33@LB@Position Seed - mRNA 82 -- 88@LB@Position Seed - sRNA 27 -- 33@LB@ |
196 |
0.08741 |
0.3657 |
ct_698 |
N/A |
-4.23 |
0.486304 |
280 -- 292 |
22 -- 34 |
tRNA modification GTPase |
|
_____________279___________293\n_____________|_____________|\n5'-AAA...CGGAC____U________UAUUUCUG-3'\n______________CGGA_GCUAUUUC\n______________|:||_||||||:|\n______________GUCU_CGAUAAGG\n3'-UUU...UCUCA____U________UACCG...GAA-5'\n_____________|_____________|\n_____________35____________21\n |
285 -- 291 |
23 -- 29 |
-13.8571 kcal/mol |
4.89721 kcal/mol |
4.72608 kcal/mol |
279 293@LB@ | |@LB@5'-AAA...CGGAC U UAUUUCUG-3'@LB@ CGGA GCUAUUUC@LB@ |:|| ||||||:|@LB@ GUCU CGAUAAGG@LB@3'-UUU...UCUCA U UACCG...GAA-5'@LB@ | |@LB@ 35 21@LB@@LB@@LB@Energy -4.23 kcal/mol@LB@Hybridization Energy -13.8571 kcal/mol@LB@Unfolding Energy - mRNA 4.89721 kcal/mol@LB@Unfolding Energy - sRNA 4.72608 kcal/mol@LB@@LB@Position - mRNA 280 -- 292@LB@Position - sRNA 22 -- 34@LB@Position Seed - mRNA 285 -- 291@LB@Position Seed - sRNA 23 -- 29@LB@ |
59 |
0.02324 |
0.29 |
ct_106 |
yceC |
-7.97 |
0.086897 |
139 -- 180 |
3 -- 31 |
tRNA pseudouridine synthase A |
|
_____________138__________________________________________181\n_____________|____________________________________________|\n5'-CUC...GAAAA__________UAUCA______AAUUCUCGUAAAAUC________ACACU...CCG-3'\n______________AAGCUGUUCU_______UAGA_______________GUACCAAC\n______________|||||:|||:_______||||_______________:|||||||\n______________UUCGAUAAGG_______AUCU_______________UAUGGUUG\n3'-UUU...CAGUC__________UACCGCA___________________________AA-5'\n_____________|____________________________________________|\n_____________32___________________________________________2\n |
174 -- 180 |
3 -- 9 |
-21.8491 kcal/mol |
5.39956 kcal/mol |
8.47511 kcal/mol |
138 181@LB@ | |@LB@5'-CUC...GAAAA UAUCA AAUUCUCGUAAAAUC ACACU...CCG-3'@LB@ AAGCUGUUCU UAGA GUACCAAC@LB@ |||||:|||: |||| :|||||||@LB@ UUCGAUAAGG AUCU UAUGGUUG@LB@3'-UUU...CAGUC UACCGCA AA-5'@LB@ | |@LB@ 32 2@LB@@LB@@LB@Energy -7.97 kcal/mol@LB@Hybridization Energy -21.8491 kcal/mol@LB@Unfolding Energy - mRNA 5.39956 kcal/mol@LB@Unfolding Energy - sRNA 8.47511 kcal/mol@LB@@LB@Position - mRNA 139 -- 180@LB@Position - sRNA 3 -- 31@LB@Position Seed - mRNA 174 -- 180@LB@Position Seed - sRNA 3 -- 9@LB@ |
125 |
0.05005 |
0.3262 |
ct_644 |
yohI |
-5.25 |
0.326074 |
256 -- 262 |
53 -- 59 |
tRNA-dihydrouridine synthase |
|
_____________255_____263\n_____________|_______|\n5'-CUG...CUACG_______AGCGG...CGG-3'\n______________CCCCCUU\n______________|||||:|\n______________GGGGGGA\n3'-UUU...CUGAA_______CACAU...GAA-5'\n_____________|_______|\n_____________60______52\n |
256 -- 262 |
53 -- 59 |
-11.5527 kcal/mol |
0.822659 kcal/mol |
5.47887 kcal/mol |
255 263@LB@ | |@LB@5'-CUG...CUACG AGCGG...CGG-3'@LB@ CCCCCUU@LB@ |||||:|@LB@ GGGGGGA@LB@3'-UUU...CUGAA CACAU...GAA-5'@LB@ | |@LB@ 60 52@LB@@LB@@LB@Energy -5.25 kcal/mol@LB@Hybridization Energy -11.5527 kcal/mol@LB@Unfolding Energy - mRNA 0.822659 kcal/mol@LB@Unfolding Energy - sRNA 5.47887 kcal/mol@LB@@LB@Position - mRNA 256 -- 262@LB@Position - sRNA 53 -- 59@LB@Position Seed - mRNA 256 -- 262@LB@Position Seed - sRNA 53 -- 59@LB@ |
91 |
0.03287 |
0.2942 |
ct_674 |
yscC |
-7.61 |
0.105180 |
32 -- 46 |
36 -- 57 |
type II secretion system protein |
|
_____________31_____________________47\n_____________|______________________|\n5'-UGG...ACACA______________G_______AUUUG...CGG-3'\n______________CCCC_______AAA_GCUAGAG\n______________||||_______|||_:||||||\n______________GGGG_______UUU_UGAUCUC\n3'-UUU...GAAGG____ACACAUG___G_______AGUCU...GAA-5'\n_____________|______________________|\n_____________58_____________________35\n |
40 -- 46 |
36 -- 42 |
-18.3 kcal/mol |
2.71277 kcal/mol |
7.97448 kcal/mol |
31 47@LB@ | |@LB@5'-UGG...ACACA G AUUUG...CGG-3'@LB@ CCCC AAA GCUAGAG@LB@ |||| ||| :||||||@LB@ GGGG UUU UGAUCUC@LB@3'-UUU...GAAGG ACACAUG G AGUCU...GAA-5'@LB@ | |@LB@ 58 35@LB@@LB@@LB@Energy -7.61 kcal/mol@LB@Hybridization Energy -18.3 kcal/mol@LB@Unfolding Energy - mRNA 2.71277 kcal/mol@LB@Unfolding Energy - sRNA 7.97448 kcal/mol@LB@@LB@Position - mRNA 32 -- 46@LB@Position - sRNA 36 -- 57@LB@Position Seed - mRNA 40 -- 46@LB@Position Seed - sRNA 36 -- 42@LB@ |
116 |
0.04833 |
0.3262 |
ct_570 |
gspF |
-8.17 |
0.078365 |
199 -- 207 |
80 -- 88 |
type II secretion system protein F |
|
_____________198_______208\n_____________|_________|\n5'-AUC...AGGGG_________GGUUU...CUG-3'\n______________AUAUGGCUA\n______________|||:|||||\n______________UAUGCCGAU\n3'-UUU...GCCUC_________UGAGG...GAA-5'\n_____________|_________|\n_____________89________79\n |
201 -- 207 |
80 -- 86 |
-11.0443 kcal/mol |
1.77912 kcal/mol |
1.09753 kcal/mol |
198 208@LB@ | |@LB@5'-AUC...AGGGG GGUUU...CUG-3'@LB@ AUAUGGCUA@LB@ |||:|||||@LB@ UAUGCCGAU@LB@3'-UUU...GCCUC UGAGG...GAA-5'@LB@ | |@LB@ 89 79@LB@@LB@@LB@Energy -8.17 kcal/mol@LB@Hybridization Energy -11.0443 kcal/mol@LB@Unfolding Energy - mRNA 1.77912 kcal/mol@LB@Unfolding Energy - sRNA 1.09753 kcal/mol@LB@@LB@Position - mRNA 199 -- 207@LB@Position - sRNA 80 -- 88@LB@Position Seed - mRNA 201 -- 207@LB@Position Seed - sRNA 80 -- 86@LB@ |