159 |
0.06732 |
0.3424 |
ct_663 |
N/A |
-7.57 |
0.107718 |
228 -- 234 |
15 -- 21 |
type III secretion system chaperone |
|
_____________227_____235\n_____________|_______|\n5'-UCU...AUUUU_______AUAUG...GCC-3'\n______________GUGGCGU\n______________:||||||\n______________UACCGCA\n3'-UUU...UAAGG_______AUCUU...GAA-5'\n_____________|_______|\n_____________22______14\n |
228 -- 234 |
15 -- 21 |
-10.4333 kcal/mol |
1.67755 kcal/mol |
1.18845 kcal/mol |
227 235@LB@ | |@LB@5'-UCU...AUUUU AUAUG...GCC-3'@LB@ GUGGCGU@LB@ :||||||@LB@ UACCGCA@LB@3'-UUU...UAAGG AUCUU...GAA-5'@LB@ | |@LB@ 22 14@LB@@LB@@LB@Energy -7.57 kcal/mol@LB@Hybridization Energy -10.4333 kcal/mol@LB@Unfolding Energy - mRNA 1.67755 kcal/mol@LB@Unfolding Energy - sRNA 1.18845 kcal/mol@LB@@LB@Position - mRNA 228 -- 234@LB@Position - sRNA 15 -- 21@LB@Position Seed - mRNA 228 -- 234@LB@Position Seed - sRNA 15 -- 21@LB@ |
71 |
0.027 |
0.29 |
ct_712 |
N/A |
-6.32 |
0.201489 |
257 -- 263 |
81 -- 87 |
type III secretion system effector protein |
|
_____________256_____264\n_____________|_______|\n5'-CAG...GAGAC_______CCUCG...CAG-3'\n______________UGCGGCU\n______________|:|||||\n______________AUGCCGA\n3'-UUU...CCUCU_______UUGAG...GAA-5'\n_____________|_______|\n_____________88______80\n |
257 -- 263 |
81 -- 87 |
-10.8048 kcal/mol |
3.3916 kcal/mol |
1.09752 kcal/mol |
256 264@LB@ | |@LB@5'-CAG...GAGAC CCUCG...CAG-3'@LB@ UGCGGCU@LB@ |:|||||@LB@ AUGCCGA@LB@3'-UUU...CCUCU UUGAG...GAA-5'@LB@ | |@LB@ 88 80@LB@@LB@@LB@Energy -6.32 kcal/mol@LB@Hybridization Energy -10.8048 kcal/mol@LB@Unfolding Energy - mRNA 3.3916 kcal/mol@LB@Unfolding Energy - sRNA 1.09752 kcal/mol@LB@@LB@Position - mRNA 257 -- 263@LB@Position - sRNA 81 -- 87@LB@Position Seed - mRNA 257 -- 263@LB@Position Seed - sRNA 81 -- 87@LB@ |
25 |
0.00654 |
0.2093 |
ct_672 |
N/A |
-9.75 |
0.032384 |
176 -- 205 |
17 -- 33 |
type III secretion system protein |
|
_____________175____________________________206\n_____________|______________________________|\n5'-AUC...GUAGA_______CAUAUAUAAGGU___C_______AGUUG...CUG-3'\n______________AGAAGCU____________AUU_CCAUGGC\n______________|||||||____________|||_|||||||\n______________UCUUCGA____________UAA_GGUACCG\n3'-UUU...CUCAG______________________________CAAUC...GAA-5'\n_____________|______________________________|\n_____________34_____________________________16\n |
199 -- 205 |
17 -- 23 |
-19.3096 kcal/mol |
4.57941 kcal/mol |
4.97804 kcal/mol |
175 206@LB@ | |@LB@5'-AUC...GUAGA CAUAUAUAAGGU C AGUUG...CUG-3'@LB@ AGAAGCU AUU CCAUGGC@LB@ ||||||| ||| |||||||@LB@ UCUUCGA UAA GGUACCG@LB@3'-UUU...CUCAG CAAUC...GAA-5'@LB@ | |@LB@ 34 16@LB@@LB@@LB@Energy -9.75 kcal/mol@LB@Hybridization Energy -19.3096 kcal/mol@LB@Unfolding Energy - mRNA 4.57941 kcal/mol@LB@Unfolding Energy - sRNA 4.97804 kcal/mol@LB@@LB@Position - mRNA 176 -- 205@LB@Position - sRNA 17 -- 33@LB@Position Seed - mRNA 199 -- 205@LB@Position Seed - sRNA 17 -- 23@LB@ |
104 |
0.03845 |
0.3036 |
ct_860 |
N/A |
-5.72 |
0.265250 |
231 -- 258 |
29 -- 56 |
type III secretion system translocator CopD2 |
|
_____________230__________________________259\n_____________|____________________________|\n5'-AGU...CACUA____CAU________A___CAA______AGCAG...CCA-3'\n______________CCUU___UACAAACA_UAG___CAGGAG\n______________||:|___||||||||_|||___|||:||\n______________GGGA___AUGUUUGU_AUC___GUCUUC\n3'-UUU...AAGGG____CAC________G___UCA______GAUAA...GAA-5'\n_____________|____________________________|\n_____________57___________________________28\n |
239 -- 245 |
42 -- 48 |
-21.1219 kcal/mol |
3.33524 kcal/mol |
12.064 kcal/mol |
230 259@LB@ | |@LB@5'-AGU...CACUA CAU A CAA AGCAG...CCA-3'@LB@ CCUU UACAAACA UAG CAGGAG@LB@ ||:| |||||||| ||| |||:||@LB@ GGGA AUGUUUGU AUC GUCUUC@LB@3'-UUU...AAGGG CAC G UCA GAUAA...GAA-5'@LB@ | |@LB@ 57 28@LB@@LB@@LB@Energy -5.72 kcal/mol@LB@Hybridization Energy -21.1219 kcal/mol@LB@Unfolding Energy - mRNA 3.33524 kcal/mol@LB@Unfolding Energy - sRNA 12.064 kcal/mol@LB@@LB@Position - mRNA 231 -- 258@LB@Position - sRNA 29 -- 56@LB@Position Seed - mRNA 239 -- 245@LB@Position Seed - sRNA 42 -- 48@LB@ |
108 |
0.04117 |
0.3134 |
ct_817 |
tyrP_1 |
-6.29 |
0.204127 |
20 -- 34 |
17 -- 30 |
tyrosine-specific transport protein |
|
_____________19______________35\n_____________|_______________|\n5'-CGA...AUCAU____UACA_______UUUAC...UCC-3'\n______________GGCU____CCAUGGC\n______________:|||____|||||||\n______________UCGA____GGUACCG\n3'-UUU...AGUCU____UAA________CAAUC...GAA-5'\n_____________|_______________|\n_____________31______________16\n |
28 -- 34 |
17 -- 23 |
-15.6862 kcal/mol |
4.66372 kcal/mol |
4.73426 kcal/mol |
19 35@LB@ | |@LB@5'-CGA...AUCAU UACA UUUAC...UCC-3'@LB@ GGCU CCAUGGC@LB@ :||| |||||||@LB@ UCGA GGUACCG@LB@3'-UUU...AGUCU UAA CAAUC...GAA-5'@LB@ | |@LB@ 31 16@LB@@LB@@LB@Energy -6.29 kcal/mol@LB@Hybridization Energy -15.6862 kcal/mol@LB@Unfolding Energy - mRNA 4.66372 kcal/mol@LB@Unfolding Energy - sRNA 4.73426 kcal/mol@LB@@LB@Position - mRNA 20 -- 34@LB@Position - sRNA 17 -- 30@LB@Position Seed - mRNA 28 -- 34@LB@Position Seed - sRNA 17 -- 23@LB@ |
66 |
0.02511 |
0.29 |
ct_461 |
N/A |
-5.44 |
0.300406 |
64 -- 70 |
79 -- 85 |
UDP-2 3-diacylglucosamine pyrophosphohydrolase |
|
_____________63______71\n_____________|_______|\n5'-ACA...UAAAU_______AGUUU...UGA-3'\n______________UGGCUAA\n______________:||||||\n______________GCCGAUU\n3'-UUU...UCUAU_______GAGGU...GAA-5'\n_____________|_______|\n_____________86______78\n |
64 -- 70 |
79 -- 85 |
-7.83174 kcal/mol |
1.29235 kcal/mol |
1.09751 kcal/mol |
63 71@LB@ | |@LB@5'-ACA...UAAAU AGUUU...UGA-3'@LB@ UGGCUAA@LB@ :||||||@LB@ GCCGAUU@LB@3'-UUU...UCUAU GAGGU...GAA-5'@LB@ | |@LB@ 86 78@LB@@LB@@LB@Energy -5.44 kcal/mol@LB@Hybridization Energy -7.83174 kcal/mol@LB@Unfolding Energy - mRNA 1.29235 kcal/mol@LB@Unfolding Energy - sRNA 1.09751 kcal/mol@LB@@LB@Position - mRNA 64 -- 70@LB@Position - sRNA 79 -- 85@LB@Position Seed - mRNA 64 -- 70@LB@Position Seed - sRNA 79 -- 85@LB@ |
147 |
0.05913 |
0.3307 |
ct_243 |
lpxD |
-5.18 |
0.335797 |
179 -- 192 |
18 -- 32 |
UDP-3-O-acylglucosamine N-acyltransferase |
|
_____________178_____________193\n_____________|_______________|\n5'-UCA...CAUGC_______G____A__AGUGC...UCG-3'\n______________GAAGCUA__CCG_GG\n______________|||||||__||:_||\n______________CUUCGAU__GGU_CC\n3'-UUU...UCAGU_______AA___A__GCAAU...GAA-5'\n_____________|_______________|\n_____________33______________17\n |
179 -- 185 |
26 -- 32 |
-15.005 kcal/mol |
4.85774 kcal/mol |
4.96566 kcal/mol |
178 193@LB@ | |@LB@5'-UCA...CAUGC G A AGUGC...UCG-3'@LB@ GAAGCUA CCG GG@LB@ ||||||| ||: ||@LB@ CUUCGAU GGU CC@LB@3'-UUU...UCAGU AA A GCAAU...GAA-5'@LB@ | |@LB@ 33 17@LB@@LB@@LB@Energy -5.18 kcal/mol@LB@Hybridization Energy -15.005 kcal/mol@LB@Unfolding Energy - mRNA 4.85774 kcal/mol@LB@Unfolding Energy - sRNA 4.96566 kcal/mol@LB@@LB@Position - mRNA 179 -- 192@LB@Position - sRNA 18 -- 32@LB@Position Seed - mRNA 179 -- 185@LB@Position Seed - sRNA 26 -- 32@LB@ |
180 |
0.07821 |
0.3571 |
ct_831 |
murB |
-7.63 |
0.104376 |
230 -- 248 |
17 -- 33 |
UDP-N-acetylenolpyruvoylglucosamine reductase |
|
_____________229_________________249\n_____________|___________________|\n5'-GUU...GUUCA____U_________UAA__CGCUU...UAA-3'\n______________AGAA_CUGUUCCAU___GC\n______________||||_||:||||||___||\n______________UCUU_GAUAAGGUA___CG\n3'-UUU...CUCAG____C_________C____CAAUC...GAA-5'\n_____________|___________________|\n_____________34__________________16\n |
237 -- 243 |
20 -- 26 |
-14.8604 kcal/mol |
2.25495 kcal/mol |
4.97804 kcal/mol |
229 249@LB@ | |@LB@5'-GUU...GUUCA U UAA CGCUU...UAA-3'@LB@ AGAA CUGUUCCAU GC@LB@ |||| ||:|||||| ||@LB@ UCUU GAUAAGGUA CG@LB@3'-UUU...CUCAG C C CAAUC...GAA-5'@LB@ | |@LB@ 34 16@LB@@LB@@LB@Energy -7.63 kcal/mol@LB@Hybridization Energy -14.8604 kcal/mol@LB@Unfolding Energy - mRNA 2.25495 kcal/mol@LB@Unfolding Energy - sRNA 4.97804 kcal/mol@LB@@LB@Position - mRNA 230 -- 248@LB@Position - sRNA 17 -- 33@LB@Position Seed - mRNA 237 -- 243@LB@Position Seed - sRNA 20 -- 26@LB@ |
30 |
0.009028 |
0.2474 |
ct_455 |
murA |
-8.03 |
0.084305 |
255 -- 264 |
26 -- 35 |
UDP-N-acetylglucosamine 1-carboxyvinyltransferase |
|
_____________254________265\n_____________|__________|\n5'-AAA...GCGUG__________AAAAU...UAC-3'\n______________UCAGGAGCUA\n______________||||:|||||\n______________AGUCUUCGAU\n3'-UUU...AUCUC__________AAGGU...GAA-5'\n_____________|__________|\n_____________36_________25\n |
258 -- 264 |
26 -- 32 |
-13.9898 kcal/mol |
1.25877 kcal/mol |
4.69985 kcal/mol |
254 265@LB@ | |@LB@5'-AAA...GCGUG AAAAU...UAC-3'@LB@ UCAGGAGCUA@LB@ ||||:|||||@LB@ AGUCUUCGAU@LB@3'-UUU...AUCUC AAGGU...GAA-5'@LB@ | |@LB@ 36 25@LB@@LB@@LB@Energy -8.03 kcal/mol@LB@Hybridization Energy -13.9898 kcal/mol@LB@Unfolding Energy - mRNA 1.25877 kcal/mol@LB@Unfolding Energy - sRNA 4.69985 kcal/mol@LB@@LB@Position - mRNA 255 -- 264@LB@Position - sRNA 26 -- 35@LB@Position Seed - mRNA 258 -- 264@LB@Position Seed - sRNA 26 -- 32@LB@ |
89 |
0.03269 |
0.2942 |
ct_269 |
murE |
-8.94 |
0.051230 |
172 -- 183 |
46 -- 57 |
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2 6-diaminopimelate ligase |
|
_____________171__________184\n_____________|____________|\n5'-AUC...UGAAG____________UGUCU...UUG-3'\n______________CCCUUGUGUGCG\n______________|||:|||||:|:\n______________GGGGACACAUGU\n3'-UUU...GAAGG____________UUGUG...GAA-5'\n_____________|____________|\n_____________58___________45\n |
176 -- 182 |
47 -- 53 |
-19.7508 kcal/mol |
3.51628 kcal/mol |
7.29173 kcal/mol |
171 184@LB@ | |@LB@5'-AUC...UGAAG UGUCU...UUG-3'@LB@ CCCUUGUGUGCG@LB@ |||:|||||:|:@LB@ GGGGACACAUGU@LB@3'-UUU...GAAGG UUGUG...GAA-5'@LB@ | |@LB@ 58 45@LB@@LB@@LB@Energy -8.94 kcal/mol@LB@Hybridization Energy -19.7508 kcal/mol@LB@Unfolding Energy - mRNA 3.51628 kcal/mol@LB@Unfolding Energy - sRNA 7.29173 kcal/mol@LB@@LB@Position - mRNA 172 -- 183@LB@Position - sRNA 46 -- 57@LB@Position Seed - mRNA 176 -- 182@LB@Position Seed - sRNA 47 -- 53@LB@ |