| 5 |
0.0004969 |
0.07439 |
ct_056 |
N/A |
-17.69 |
0.000175 |
196 -- 255 |
6 -- 56 |
|
|
_____________195________________________________________________________________256\n_____________|__________________________________________________________________|\n5'-GUG...AGGAU_____AU__________CCCU__C______UUACGUAAACAGACAU_______A____________UUCCU...AAG-3'\n______________CCCUG______GACACU____UC_GAAGCU________________UUCC_UG__GUUAGAAUACC\n______________|||||______:|||||____||_||||||________________||||_||__|||||||||||\n______________GGGAC______UUGUGA____AG_CUUCGA________________AAGG_AC__CAAUCUUAUGG\n3'-UUU...AAGGG_____ACAUGU______UCUC__U______U___________________U__CG___________UUGAA-5'\n_____________|__________________________________________________________________|\n_____________57_________________________________________________________________5\n |
249 -- 255 |
6 -- 12 |
-39.697 kcal/mol |
5.45688 kcal/mol |
16.5497 kcal/mol |
195 256@LB@ | |@LB@5'-GUG...AGGAU AU CCCU C UUACGUAAACAGACAU A UUCCU...AAG-3'@LB@ CCCUG GACACU UC GAAGCU UUCC UG GUUAGAAUACC@LB@ ||||| :||||| || |||||| |||| || |||||||||||@LB@ GGGAC UUGUGA AG CUUCGA AAGG AC CAAUCUUAUGG@LB@3'-UUU...AAGGG ACAUGU UCUC U U U CG UUGAA-5'@LB@ | |@LB@ 57 5@LB@@LB@@LB@Energy -17.69 kcal/mol@LB@Hybridization Energy -39.697 kcal/mol@LB@Unfolding Energy - mRNA 5.45688 kcal/mol@LB@Unfolding Energy - sRNA 16.5497 kcal/mol@LB@@LB@Position - mRNA 196 -- 255@LB@Position - sRNA 6 -- 56@LB@Position Seed - mRNA 249 -- 255@LB@Position Seed - sRNA 6 -- 12@LB@ |
| 4 |
0.0004436 |
0.07439 |
ct_864 |
xerD |
-16.31 |
0.000480 |
24 -- 38 |
17 -- 31 |
site-specific tyrosine recombinase XerD |
|
_____________23______________39\n_____________|_______________|\n5'-CAU...AUGGA_______________ACCUU...AUU-3'\n______________GAGCUAUUCCAUGGU\n______________:|||||||||||||:\n______________UUCGAUAAGGUACCG\n3'-UUU...CAGUC_______________CAAUC...GAA-5'\n_____________|_______________|\n_____________32______________16\n |
32 -- 38 |
17 -- 23 |
-24.2689 kcal/mol |
3.09995 kcal/mol |
4.86101 kcal/mol |
23 39@LB@ | |@LB@5'-CAU...AUGGA ACCUU...AUU-3'@LB@ GAGCUAUUCCAUGGU@LB@ :|||||||||||||:@LB@ UUCGAUAAGGUACCG@LB@3'-UUU...CAGUC CAAUC...GAA-5'@LB@ | |@LB@ 32 16@LB@@LB@@LB@Energy -16.31 kcal/mol@LB@Hybridization Energy -24.2689 kcal/mol@LB@Unfolding Energy - mRNA 3.09995 kcal/mol@LB@Unfolding Energy - sRNA 4.86101 kcal/mol@LB@@LB@Position - mRNA 24 -- 38@LB@Position - sRNA 17 -- 31@LB@Position Seed - mRNA 32 -- 38@LB@Position Seed - sRNA 17 -- 23@LB@ |
| 92 |
0.03292 |
0.2942 |
ct_558 |
lipA |
-15.60 |
0.000793 |
187 -- 244 |
3 -- 58 |
lipoyl synthase |
|
_____________186_________________________________________________________245\n_____________|___________________________________________________________|\n5'-ACU...AUAUG_______CUAAA_____ACC__U______UCUC_______UAAAAAAUCU______C__CAGAU...AAA-3'\n______________CCCCCUG_____AAAUG___GA_UCAGAA____CUAUUCC___________AUACC_GC\n______________|||||||_____|||::___||_||||||____|||||||___________|||||_:|\n______________GGGGGAC_____UUUGU___CU_AGUCUU____GAUAAGG___________UAUGG_UG\n3'-UUU...UGAAG_______ACAUG_____GAU__C______C__________UACCGCAAUCU_____U__AA-5'\n_____________|___________________________________________________________|\n_____________59__________________________________________________________2\n |
220 -- 226 |
22 -- 28 |
-35.9268 kcal/mol |
3.77883 kcal/mol |
16.5523 kcal/mol |
186 245@LB@ | |@LB@5'-ACU...AUAUG CUAAA ACC U UCUC UAAAAAAUCU C CAGAU...AAA-3'@LB@ CCCCCUG AAAUG GA UCAGAA CUAUUCC AUACC GC@LB@ ||||||| |||:: || |||||| ||||||| ||||| :|@LB@ GGGGGAC UUUGU CU AGUCUU GAUAAGG UAUGG UG@LB@3'-UUU...UGAAG ACAUG GAU C C UACCGCAAUCU U AA-5'@LB@ | |@LB@ 59 2@LB@@LB@@LB@Energy -15.60 kcal/mol@LB@Hybridization Energy -35.9268 kcal/mol@LB@Unfolding Energy - mRNA 3.77883 kcal/mol@LB@Unfolding Energy - sRNA 16.5523 kcal/mol@LB@@LB@Position - mRNA 187 -- 244@LB@Position - sRNA 3 -- 58@LB@Position Seed - mRNA 220 -- 226@LB@Position Seed - sRNA 22 -- 28@LB@ |
| 10 |
0.001873 |
0.154 |
ct_367 |
aroL |
-15.55 |
0.000817 |
132 -- 208 |
3 -- 59 |
shikimate kinase |
|
_____________131_______________________________________________________________________________209\n_____________|_________________________________________________________________________________|\n5'-UGU...ACAAA_______CUGUAACACACA___________________UUCCA__________AUUGCA___C____CACUAC________GUUCG...UGC-3'\n______________CCCUCCU____________GUGUAUAAAUA__AGAGUU______UAUUUCGUG______GCG__AGA______AUGCCAAC\n______________|||:|||____________|||||:|||:|__|||||:______||||:|:||______|||__|||______||:|||||\n______________GGGGGGA____________CACAUGUUUGU__UCUCAG______AUAAGGUAC______CGC__UCU______UAUGGUUG\n3'-UUU...CUGAA______________________________GA______UCUUCG__________________AA_________________AA-5'\n_____________|_________________________________________________________________________________|\n_____________60________________________________________________________________________________2\n |
202 -- 208 |
3 -- 9 |
-46.252 kcal/mol |
13.1534 kcal/mol |
17.5467 kcal/mol |
131 209@LB@ | |@LB@5'-UGU...ACAAA CUGUAACACACA UUCCA AUUGCA C CACUAC GUUCG...UGC-3'@LB@ CCCUCCU GUGUAUAAAUA AGAGUU UAUUUCGUG GCG AGA AUGCCAAC@LB@ |||:||| |||||:|||:| |||||: ||||:|:|| ||| ||| ||:|||||@LB@ GGGGGGA CACAUGUUUGU UCUCAG AUAAGGUAC CGC UCU UAUGGUUG@LB@3'-UUU...CUGAA GA UCUUCG AA AA-5'@LB@ | |@LB@ 60 2@LB@@LB@@LB@Energy -15.55 kcal/mol@LB@Hybridization Energy -46.252 kcal/mol@LB@Unfolding Energy - mRNA 13.1534 kcal/mol@LB@Unfolding Energy - sRNA 17.5467 kcal/mol@LB@@LB@Position - mRNA 132 -- 208@LB@Position - sRNA 3 -- 59@LB@Position Seed - mRNA 202 -- 208@LB@Position Seed - sRNA 3 -- 9@LB@ |
| 118 |
0.04846 |
0.3262 |
ct_515 |
rs8 |
-12.50 |
0.006183 |
13 -- 43 |
3 -- 33 |
30S ribosomal protein S8 |
|
_____________12_______________________________44\n_____________|________________________________|\n5'-GGA...GACGA___U________UU__________UG______AAAUC...UGC-3'\n______________GGA_GUUAUUCC__UGGU_UUAGA__AUCAGC\n______________:||_|:||||||__|||:_|||||__|:||:|\n______________UCU_CGAUAAGG__ACCG_AAUCU__UGGUUG\n3'-UUU...CUCAG___U________U_____C_____UA______AA-5'\n_____________|________________________________|\n_____________34_______________________________2\n |
18 -- 24 |
22 -- 28 |
-29.6343 kcal/mol |
8.5463 kcal/mol |
8.59196 kcal/mol |
12 44@LB@ | |@LB@5'-GGA...GACGA U UU UG AAAUC...UGC-3'@LB@ GGA GUUAUUCC UGGU UUAGA AUCAGC@LB@ :|| |:|||||| |||: ||||| |:||:|@LB@ UCU CGAUAAGG ACCG AAUCU UGGUUG@LB@3'-UUU...CUCAG U U C UA AA-5'@LB@ | |@LB@ 34 2@LB@@LB@@LB@Energy -12.50 kcal/mol@LB@Hybridization Energy -29.6343 kcal/mol@LB@Unfolding Energy - mRNA 8.5463 kcal/mol@LB@Unfolding Energy - sRNA 8.59196 kcal/mol@LB@@LB@Position - mRNA 13 -- 43@LB@Position - sRNA 3 -- 33@LB@Position Seed - mRNA 18 -- 24@LB@Position Seed - sRNA 22 -- 28@LB@ |
| 95 |
0.03456 |
0.2959 |
ct_073 |
N/A |
-12.13 |
0.007785 |
261 -- 279 |
41 -- 58 |
contains leader (19) peptide |
|
_____________260_________________280\n_____________|___________________|\n5'-GAC...CUGAU_________AUU_______UGACA...GGG-3'\n______________CCCUCUGUG___CAAACAU\n______________|||:|||||___||||||:\n______________GGGGGACAC___GUUUGUG\n3'-UUU...UGAAG_________AU________AUCUC...GAA-5'\n_____________|___________________|\n_____________59__________________40\n |
263 -- 269 |
50 -- 56 |
-22.185 kcal/mol |
2.22773 kcal/mol |
7.82865 kcal/mol |
260 280@LB@ | |@LB@5'-GAC...CUGAU AUU UGACA...GGG-3'@LB@ CCCUCUGUG CAAACAU@LB@ |||:||||| ||||||:@LB@ GGGGGACAC GUUUGUG@LB@3'-UUU...UGAAG AU AUCUC...GAA-5'@LB@ | |@LB@ 59 40@LB@@LB@@LB@Energy -12.13 kcal/mol@LB@Hybridization Energy -22.185 kcal/mol@LB@Unfolding Energy - mRNA 2.22773 kcal/mol@LB@Unfolding Energy - sRNA 7.82865 kcal/mol@LB@@LB@Position - mRNA 261 -- 279@LB@Position - sRNA 41 -- 58@LB@Position Seed - mRNA 263 -- 269@LB@Position Seed - sRNA 50 -- 56@LB@ |
| 11 |
0.002752 |
0.1836 |
ct_015 |
phoH |
-12.12 |
0.007844 |
167 -- 186 |
33 -- 60 |
ATPase |
|
_____________166__________________________187\n_____________|____________________________|\n5'-CCA...CUAUC_____________________U______UUUAG...UAA-3'\n______________UCCCCCUU________ACACU_GAGUCA\n______________||||||:|________|||||_||||||\n______________AGGGGGGA________UGUGA_CUCAGU\n3'-UUU...ACUGA________CACAUGUU_____U______CUUCG...GAA-5'\n_____________|____________________________|\n_____________61___________________________32\n |
168 -- 174 |
53 -- 59 |
-26.4608 kcal/mol |
2.95889 kcal/mol |
11.3851 kcal/mol |
166 187@LB@ | |@LB@5'-CCA...CUAUC U UUUAG...UAA-3'@LB@ UCCCCCUU ACACU GAGUCA@LB@ ||||||:| ||||| ||||||@LB@ AGGGGGGA UGUGA CUCAGU@LB@3'-UUU...ACUGA CACAUGUU U CUUCG...GAA-5'@LB@ | |@LB@ 61 32@LB@@LB@@LB@Energy -12.12 kcal/mol@LB@Hybridization Energy -26.4608 kcal/mol@LB@Unfolding Energy - mRNA 2.95889 kcal/mol@LB@Unfolding Energy - sRNA 11.3851 kcal/mol@LB@@LB@Position - mRNA 167 -- 186@LB@Position - sRNA 33 -- 60@LB@Position Seed - mRNA 168 -- 174@LB@Position Seed - sRNA 53 -- 59@LB@ |
| 38 |
0.01345 |
0.2859 |
ct_769 |
ybeB |
-11.98 |
0.008536 |
76 -- 102 |
17 -- 43 |
ribosome silencing factor |
|
_____________75___________________________103\n_____________|____________________________|\n5'-CUU...GAUCU________GAA_________________AAAGA...CCC-3'\n______________CGCUAGAG___AGAGGCUAUUUU_UGGU\n______________|:||||||___|||:||||||::_|||:\n______________GUGAUCUC___UCUUCGAUAAGG_ACCG\n3'-UUU...UGUUU________AG_____________U____CAAUC...GAA-5'\n_____________|____________________________|\n_____________44___________________________16\n |
91 -- 97 |
23 -- 29 |
-31.1732 kcal/mol |
6.53125 kcal/mol |
12.6613 kcal/mol |
75 103@LB@ | |@LB@5'-CUU...GAUCU GAA AAAGA...CCC-3'@LB@ CGCUAGAG AGAGGCUAUUUU UGGU@LB@ |:|||||| |||:||||||:: |||:@LB@ GUGAUCUC UCUUCGAUAAGG ACCG@LB@3'-UUU...UGUUU AG U CAAUC...GAA-5'@LB@ | |@LB@ 44 16@LB@@LB@@LB@Energy -11.98 kcal/mol@LB@Hybridization Energy -31.1732 kcal/mol@LB@Unfolding Energy - mRNA 6.53125 kcal/mol@LB@Unfolding Energy - sRNA 12.6613 kcal/mol@LB@@LB@Position - mRNA 76 -- 102@LB@Position - sRNA 17 -- 43@LB@Position Seed - mRNA 91 -- 97@LB@Position Seed - sRNA 23 -- 29@LB@ |
| 7 |
0.0007305 |
0.07962 |
ct_505 |
gapA |
-11.17 |
0.013986 |
23 -- 47 |
19 -- 39 |
glyceraldehyde-3-phosphate dehydrogenase |
|
_____________22________________________48\n_____________|_________________________|\n5'-GUC...AUAGA______AUUG___________G___UGUUA...AUU-3'\n______________AGAGUC____GGAAGUUAUUU_AUG\n______________||||||____:||||:||||:_|||\n______________UCUCAG____UCUUCGAUAAG_UAC\n3'-UUU...UGUGA_____________________G___CGCAA...GAA-5'\n_____________|_________________________|\n_____________40________________________18\n |
34 -- 40 |
26 -- 32 |
-23.0041 kcal/mol |
2.2627 kcal/mol |
9.5668 kcal/mol |
22 48@LB@ | |@LB@5'-GUC...AUAGA AUUG G UGUUA...AUU-3'@LB@ AGAGUC GGAAGUUAUUU AUG@LB@ |||||| :||||:||||: |||@LB@ UCUCAG UCUUCGAUAAG UAC@LB@3'-UUU...UGUGA G CGCAA...GAA-5'@LB@ | |@LB@ 40 18@LB@@LB@@LB@Energy -11.17 kcal/mol@LB@Hybridization Energy -23.0041 kcal/mol@LB@Unfolding Energy - mRNA 2.2627 kcal/mol@LB@Unfolding Energy - sRNA 9.5668 kcal/mol@LB@@LB@Position - mRNA 23 -- 47@LB@Position - sRNA 19 -- 39@LB@Position Seed - mRNA 34 -- 40@LB@Position Seed - sRNA 26 -- 32@LB@ |
| 8 |
0.0008373 |
0.07962 |
ct_066 |
N/A |
-11.14 |
0.014316 |
190 -- 205 |
17 -- 33 |
|
|
_____________189_______________206\n_____________|_________________|\n5'-UUU...CACUA_________________UACGG...GUU-3'\n______________AGGAGCUAUUC_AUGGC\n______________||:||||||||_|||||\n______________UCUUCGAUAAG_UACCG\n3'-UUU...CUCAG___________G_____CAAUC...GAA-5'\n_____________|_________________|\n_____________34________________16\n |
194 -- 200 |
23 -- 29 |
-22.6652 kcal/mol |
6.55112 kcal/mol |
4.97804 kcal/mol |
189 206@LB@ | |@LB@5'-UUU...CACUA UACGG...GUU-3'@LB@ AGGAGCUAUUC AUGGC@LB@ ||:|||||||| |||||@LB@ UCUUCGAUAAG UACCG@LB@3'-UUU...CUCAG G CAAUC...GAA-5'@LB@ | |@LB@ 34 16@LB@@LB@@LB@Energy -11.14 kcal/mol@LB@Hybridization Energy -22.6652 kcal/mol@LB@Unfolding Energy - mRNA 6.55112 kcal/mol@LB@Unfolding Energy - sRNA 4.97804 kcal/mol@LB@@LB@Position - mRNA 190 -- 205@LB@Position - sRNA 17 -- 33@LB@Position Seed - mRNA 194 -- 200@LB@Position Seed - sRNA 23 -- 29@LB@ |
