51 |
0.01855 |
0.29 |
ct_758 |
murD |
-8.46 |
0.066834 |
21 -- 39 |
25 -- 51 |
UDP-N-acetylmuramoylalanine--D-glutamate ligase |
|
_____________20__________________________40\n_____________|___________________________|\n5'-CUG...GUGAU___________________________AAAUU...ACA-3'\n______________UGUACA________AGUCGGAAGUUAU\n______________||||||________||||:||||:|||\n______________ACAUGU________UCAGUCUUCGAUA\n3'-UUU...GGGAC______UUGUGAUC_____________AGGUA...GAA-5'\n_____________|___________________________|\n_____________52__________________________24\n |
33 -- 39 |
25 -- 31 |
-21.2974 kcal/mol |
1.17475 kcal/mol |
11.6617 kcal/mol |
20 40@LB@ | |@LB@5'-CUG...GUGAU AAAUU...ACA-3'@LB@ UGUACA AGUCGGAAGUUAU@LB@ |||||| ||||:||||:|||@LB@ ACAUGU UCAGUCUUCGAUA@LB@3'-UUU...GGGAC UUGUGAUC AGGUA...GAA-5'@LB@ | |@LB@ 52 24@LB@@LB@@LB@Energy -8.46 kcal/mol@LB@Hybridization Energy -21.2974 kcal/mol@LB@Unfolding Energy - mRNA 1.17475 kcal/mol@LB@Unfolding Energy - sRNA 11.6617 kcal/mol@LB@@LB@Position - mRNA 21 -- 39@LB@Position - sRNA 25 -- 51@LB@Position Seed - mRNA 33 -- 39@LB@Position Seed - sRNA 25 -- 31@LB@ |
121 |
0.04894 |
0.3262 |
ct_310 |
atpE |
-7.64 |
0.103947 |
27 -- 34 |
80 -- 87 |
V-type ATP synthase subunit E |
|
_____________26_______35\n_____________|________|\n5'-GCA...CCUUC________CCUUC...UUC-3'\n______________UACGGCUG\n______________|||||||:\n______________AUGCCGAU\n3'-UUU...CCUCU________UGAGG...GAA-5'\n_____________|________|\n_____________88_______79\n |
28 -- 34 |
80 -- 86 |
-11.9035 kcal/mol |
3.17039 kcal/mol |
1.09752 kcal/mol |
26 35@LB@ | |@LB@5'-GCA...CCUUC CCUUC...UUC-3'@LB@ UACGGCUG@LB@ |||||||:@LB@ AUGCCGAU@LB@3'-UUU...CCUCU UGAGG...GAA-5'@LB@ | |@LB@ 88 79@LB@@LB@@LB@Energy -7.64 kcal/mol@LB@Hybridization Energy -11.9035 kcal/mol@LB@Unfolding Energy - mRNA 3.17039 kcal/mol@LB@Unfolding Energy - sRNA 1.09752 kcal/mol@LB@@LB@Position - mRNA 27 -- 34@LB@Position - sRNA 80 -- 87@LB@Position Seed - mRNA 28 -- 34@LB@Position Seed - sRNA 80 -- 86@LB@ |
42 |
0.01617 |
0.29 |
ct_610 |
N/A |
-8.69 |
0.058803 |
15 -- 22 |
80 -- 87 |
virulence protein CADD |
|
_____________14_______23\n_____________|________|\n5'-GAU...GCAGU________UUGUU...GGG-3'\n______________UGCGGCUG\n______________|:|||||:\n______________AUGCCGAU\n3'-UUU...CCUCU________UGAGG...GAA-5'\n_____________|________|\n_____________88_______79\n |
16 -- 22 |
80 -- 86 |
-11.8172 kcal/mol |
2.02516 kcal/mol |
1.09752 kcal/mol |
14 23@LB@ | |@LB@5'-GAU...GCAGU UUGUU...GGG-3'@LB@ UGCGGCUG@LB@ |:|||||:@LB@ AUGCCGAU@LB@3'-UUU...CCUCU UGAGG...GAA-5'@LB@ | |@LB@ 88 79@LB@@LB@@LB@Energy -8.69 kcal/mol@LB@Hybridization Energy -11.8172 kcal/mol@LB@Unfolding Energy - mRNA 2.02516 kcal/mol@LB@Unfolding Energy - sRNA 1.09752 kcal/mol@LB@@LB@Position - mRNA 15 -- 22@LB@Position - sRNA 80 -- 87@LB@Position Seed - mRNA 16 -- 22@LB@Position Seed - sRNA 80 -- 86@LB@ |
19 |
0.004244 |
0.1836 |
ct_583 |
gp6D |
-9.00 |
0.049504 |
83 -- 102 |
18 -- 35 |
virulence protein GP6-D |
|
_____________82___________________103\n_____________|____________________|\n5'-UAA...CUAUC________CGCUA_______GAAAC...CUC-3'\n______________UCAGAAGC_____UCCAUGG\n______________||||||||_____|||||||\n______________AGUCUUCG_____AGGUACC\n3'-UUU...AUCUC________AUA_________GCAAU...GAA-5'\n_____________|____________________|\n_____________36___________________17\n |
96 -- 102 |
18 -- 24 |
-22.1713 kcal/mol |
8.18904 kcal/mol |
4.97803 kcal/mol |
82 103@LB@ | |@LB@5'-UAA...CUAUC CGCUA GAAAC...CUC-3'@LB@ UCAGAAGC UCCAUGG@LB@ |||||||| |||||||@LB@ AGUCUUCG AGGUACC@LB@3'-UUU...AUCUC AUA GCAAU...GAA-5'@LB@ | |@LB@ 36 17@LB@@LB@@LB@Energy -9.00 kcal/mol@LB@Hybridization Energy -22.1713 kcal/mol@LB@Unfolding Energy - mRNA 8.18904 kcal/mol@LB@Unfolding Energy - sRNA 4.97803 kcal/mol@LB@@LB@Position - mRNA 83 -- 102@LB@Position - sRNA 18 -- 35@LB@Position Seed - mRNA 96 -- 102@LB@Position Seed - sRNA 18 -- 24@LB@ |
175 |
0.07342 |
0.3448 |
ct_738 |
yycJ |
-7.78 |
0.096435 |
160 -- 204 |
18 -- 50 |
Zn-dependent hydrolase |
|
_____________159____________________________________________205\n_____________|______________________________________________|\n5'-CAU...ACCGC_____________UCCAAUUAUCAAA______C_A___A_______AAGGU...AAC-3'\n______________GU_CAAAUACUAG_____________UCAGGA_G_UUA_UCCAUGG\n______________||_||||:|||||_____________||||:|_|_:||_|||||||\n______________CA_GUUUGUGAUC_____________AGUCUU_C_GAU_AGGUACC\n3'-UUU...GGACA__U__________UC_______________________A_______GCAAU...GAA-5'\n_____________|______________________________________________|\n_____________51_____________________________________________17\n |
198 -- 204 |
18 -- 24 |
-28.1471 kcal/mol |
7.4527 kcal/mol |
12.9164 kcal/mol |
159 205@LB@ | |@LB@5'-CAU...ACCGC UCCAAUUAUCAAA C A A AAGGU...AAC-3'@LB@ GU CAAAUACUAG UCAGGA G UUA UCCAUGG@LB@ || ||||:||||| ||||:| | :|| |||||||@LB@ CA GUUUGUGAUC AGUCUU C GAU AGGUACC@LB@3'-UUU...GGACA U UC A GCAAU...GAA-5'@LB@ | |@LB@ 51 17@LB@@LB@@LB@Energy -7.78 kcal/mol@LB@Hybridization Energy -28.1471 kcal/mol@LB@Unfolding Energy - mRNA 7.4527 kcal/mol@LB@Unfolding Energy - sRNA 12.9164 kcal/mol@LB@@LB@Position - mRNA 160 -- 204@LB@Position - sRNA 18 -- 50@LB@Position Seed - mRNA 198 -- 204@LB@Position Seed - sRNA 18 -- 24@LB@ |
31 |
0.009434 |
0.2502 |
ct_824 |
N/A |
-6.02 |
0.231369 |
20 -- 32 |
21 -- 33 |
Zn-dependent peptidase |
|
_____________19____________33\n_____________|_____________|\n5'-GUC...UUUUA________G____GUAUG...CCG-3'\n______________GGAAGCUA_UCUA\n______________:|||||||_||:|\n______________UCUUCGAU_AGGU\n3'-UUU...CUCAG________A____ACCGC...GAA-5'\n_____________|_____________|\n_____________34____________20\n |
21 -- 27 |
26 -- 32 |
-13.8347 kcal/mol |
3.08274 kcal/mol |
4.73034 kcal/mol |
19 33@LB@ | |@LB@5'-GUC...UUUUA G GUAUG...CCG-3'@LB@ GGAAGCUA UCUA@LB@ :||||||| ||:|@LB@ UCUUCGAU AGGU@LB@3'-UUU...CUCAG A ACCGC...GAA-5'@LB@ | |@LB@ 34 20@LB@@LB@@LB@Energy -6.02 kcal/mol@LB@Hybridization Energy -13.8347 kcal/mol@LB@Unfolding Energy - mRNA 3.08274 kcal/mol@LB@Unfolding Energy - sRNA 4.73034 kcal/mol@LB@@LB@Position - mRNA 20 -- 32@LB@Position - sRNA 21 -- 33@LB@Position Seed - mRNA 21 -- 27@LB@Position Seed - sRNA 26 -- 32@LB@ |
5 |
0.0004969 |
0.07439 |
ct_056 |
N/A |
-17.69 |
0.000175 |
196 -- 255 |
6 -- 56 |
|
|
_____________195________________________________________________________________256\n_____________|__________________________________________________________________|\n5'-GUG...AGGAU_____AU__________CCCU__C______UUACGUAAACAGACAU_______A____________UUCCU...AAG-3'\n______________CCCUG______GACACU____UC_GAAGCU________________UUCC_UG__GUUAGAAUACC\n______________|||||______:|||||____||_||||||________________||||_||__|||||||||||\n______________GGGAC______UUGUGA____AG_CUUCGA________________AAGG_AC__CAAUCUUAUGG\n3'-UUU...AAGGG_____ACAUGU______UCUC__U______U___________________U__CG___________UUGAA-5'\n_____________|__________________________________________________________________|\n_____________57_________________________________________________________________5\n |
249 -- 255 |
6 -- 12 |
-39.697 kcal/mol |
5.45688 kcal/mol |
16.5497 kcal/mol |
195 256@LB@ | |@LB@5'-GUG...AGGAU AU CCCU C UUACGUAAACAGACAU A UUCCU...AAG-3'@LB@ CCCUG GACACU UC GAAGCU UUCC UG GUUAGAAUACC@LB@ ||||| :||||| || |||||| |||| || |||||||||||@LB@ GGGAC UUGUGA AG CUUCGA AAGG AC CAAUCUUAUGG@LB@3'-UUU...AAGGG ACAUGU UCUC U U U CG UUGAA-5'@LB@ | |@LB@ 57 5@LB@@LB@@LB@Energy -17.69 kcal/mol@LB@Hybridization Energy -39.697 kcal/mol@LB@Unfolding Energy - mRNA 5.45688 kcal/mol@LB@Unfolding Energy - sRNA 16.5497 kcal/mol@LB@@LB@Position - mRNA 196 -- 255@LB@Position - sRNA 6 -- 56@LB@Position Seed - mRNA 249 -- 255@LB@Position Seed - sRNA 6 -- 12@LB@ |
8 |
0.0008373 |
0.07962 |
ct_066 |
N/A |
-11.14 |
0.014316 |
190 -- 205 |
17 -- 33 |
|
|
_____________189_______________206\n_____________|_________________|\n5'-UUU...CACUA_________________UACGG...GUU-3'\n______________AGGAGCUAUUC_AUGGC\n______________||:||||||||_|||||\n______________UCUUCGAUAAG_UACCG\n3'-UUU...CUCAG___________G_____CAAUC...GAA-5'\n_____________|_________________|\n_____________34________________16\n |
194 -- 200 |
23 -- 29 |
-22.6652 kcal/mol |
6.55112 kcal/mol |
4.97804 kcal/mol |
189 206@LB@ | |@LB@5'-UUU...CACUA UACGG...GUU-3'@LB@ AGGAGCUAUUC AUGGC@LB@ ||:|||||||| |||||@LB@ UCUUCGAUAAG UACCG@LB@3'-UUU...CUCAG G CAAUC...GAA-5'@LB@ | |@LB@ 34 16@LB@@LB@@LB@Energy -11.14 kcal/mol@LB@Hybridization Energy -22.6652 kcal/mol@LB@Unfolding Energy - mRNA 6.55112 kcal/mol@LB@Unfolding Energy - sRNA 4.97804 kcal/mol@LB@@LB@Position - mRNA 190 -- 205@LB@Position - sRNA 17 -- 33@LB@Position Seed - mRNA 194 -- 200@LB@Position Seed - sRNA 23 -- 29@LB@ |
13 |
0.003406 |
0.1836 |
ct_744 |
N/A |
-10.55 |
0.020316 |
225 -- 240 |
17 -- 33 |
|
|
_____________224_______________241\n_____________|_________________|\n5'-AAA...UCUCU_________________UUCUG...AAU-3'\n______________GGAAGCUGUU_CAUGGU\n______________:||||||:||_|||||:\n______________UCUUCGAUAA_GUACCG\n3'-UUU...CUCAG__________G______CAAUC...GAA-5'\n_____________|_________________|\n_____________34________________16\n |
225 -- 231 |
27 -- 33 |
-21.2225 kcal/mol |
5.69382 kcal/mol |
4.97804 kcal/mol |
224 241@LB@ | |@LB@5'-AAA...UCUCU UUCUG...AAU-3'@LB@ GGAAGCUGUU CAUGGU@LB@ :||||||:|| |||||:@LB@ UCUUCGAUAA GUACCG@LB@3'-UUU...CUCAG G CAAUC...GAA-5'@LB@ | |@LB@ 34 16@LB@@LB@@LB@Energy -10.55 kcal/mol@LB@Hybridization Energy -21.2225 kcal/mol@LB@Unfolding Energy - mRNA 5.69382 kcal/mol@LB@Unfolding Energy - sRNA 4.97804 kcal/mol@LB@@LB@Position - mRNA 225 -- 240@LB@Position - sRNA 17 -- 33@LB@Position Seed - mRNA 225 -- 231@LB@Position Seed - sRNA 27 -- 33@LB@ |
14 |
0.003406 |
0.1836 |
ct_744 |
N/A |
-10.55 |
0.020316 |
225 -- 240 |
17 -- 33 |
|
|
_____________224_______________241\n_____________|_________________|\n5'-AAA...UCUCU_________________UUCUG...AAU-3'\n______________GGAAGCUGUU_CAUGGU\n______________:||||||:||_|||||:\n______________UCUUCGAUAA_GUACCG\n3'-UUU...CUCAG__________G______CAAUC...GAA-5'\n_____________|_________________|\n_____________34________________16\n |
225 -- 231 |
27 -- 33 |
-21.2225 kcal/mol |
5.69382 kcal/mol |
4.97804 kcal/mol |
224 241@LB@ | |@LB@5'-AAA...UCUCU UUCUG...AAU-3'@LB@ GGAAGCUGUU CAUGGU@LB@ :||||||:|| |||||:@LB@ UCUUCGAUAA GUACCG@LB@3'-UUU...CUCAG G CAAUC...GAA-5'@LB@ | |@LB@ 34 16@LB@@LB@@LB@Energy -10.55 kcal/mol@LB@Hybridization Energy -21.2225 kcal/mol@LB@Unfolding Energy - mRNA 5.69382 kcal/mol@LB@Unfolding Energy - sRNA 4.97804 kcal/mol@LB@@LB@Position - mRNA 225 -- 240@LB@Position - sRNA 17 -- 33@LB@Position Seed - mRNA 225 -- 231@LB@Position Seed - sRNA 27 -- 33@LB@ |