| 56 |
0.0004529 |
0.03717 |
pa2678 |
N/A |
-16.50 |
0.003530 |
187 -- 235 |
44 -- 90 |
ABC transporter permease |
|
_____________186_________________________________________________236\n_____________|___________________________________________________|\n5'-GGU...CGCCG__________UU_____A_U___UCC________________CA_______CAGUC...CCA-3'\n______________UGGAGAGUUU__CUGUG_G_GGU___CUCUUGGU__ACCGGC__GUCUCGC\n______________||:|||||::__|||:|_|_|||___||||::|:__||||||__:||||||\n______________ACUUCUCAGG__GACGC_C_CCA___GAGAGUCG__UGGCCG__UAGAGCG\n3'-UUU...AUUAG__________CU_____A________________AA______AC_______CUGGU...GUU-5'\n_____________|___________________________________________________|\n_____________91__________________________________________________43\n |
229 -- 235 |
44 -- 50 |
-54.3997 kcal/mol |
18.981 kcal/mol |
18.9194 kcal/mol |
186 236@LB@ | |@LB@5'-GGU...CGCCG UU A U UCC CA CAGUC...CCA-3'@LB@ UGGAGAGUUU CUGUG G GGU CUCUUGGU ACCGGC GUCUCGC@LB@ ||:|||||:: |||:| | ||| ||||::|: |||||| :||||||@LB@ ACUUCUCAGG GACGC C CCA GAGAGUCG UGGCCG UAGAGCG@LB@3'-UUU...AUUAG CU A AA AC CUGGU...GUU-5'@LB@ | |@LB@ 91 43@LB@@LB@@LB@Energy -16.50 kcal/mol@LB@Hybridization Energy -54.3997 kcal/mol@LB@Unfolding Energy - mRNA 18.981 kcal/mol@LB@Unfolding Energy - sRNA 18.9194 kcal/mol@LB@@LB@Position - mRNA 187 -- 235@LB@Position - sRNA 44 -- 90@LB@Position Seed - mRNA 229 -- 235@LB@Position Seed - sRNA 44 -- 50@LB@ |
| 58 |
0.0005047 |
0.0395 |
pa4066 |
N/A |
-14.62 |
0.013175 |
166 -- 238 |
44 -- 118 |
'Product name confidence: class 4 (Homologs of previously reported genes of unknown function or no similarity to any previously reported sequences)' |
|
_____________165______________________________________________________________________________________239\n_____________|________________________________________________________________________________________|\n5'-AUC...AUGGC____C___CC_________CCC_______U__C__________AU______CUCCC__ACC_______C___________________CCUGC...UGA-3'\n______________CUGU_GAU__GCCU_AUGA___GGAGAUA_UC________CCG__GCUGCG_____UG___GUC_CUC____UGCUGGCU___UUCGC\n______________|:||_|||__||||_||||___|||||||_||________|||__:|||||_____||___|||_|||____|:|:||||___:||||\n______________GGCA_CUA__CGGA_UACU___CCUCUAU_AG________GGC__UGACGC_____AC___CAG_GAG____AUGGCCGA___GAGCG\n3'-UUU...UUUUU________AU____C______________U__ACUUCUCA__________________C_____A___UCGA________CUA_____CUGGU...GUU-5'\n_____________|________________________________________________________________________________________|\n_____________119______________________________________________________________________________________43\n |
227 -- 233 |
52 -- 58 |
-54.201 kcal/mol |
16.2747 kcal/mol |
23.3102 kcal/mol |
165 239@LB@ | |@LB@5'-AUC...AUGGC C CC CCC U C AU CUCCC ACC C CCUGC...UGA-3'@LB@ CUGU GAU GCCU AUGA GGAGAUA UC CCG GCUGCG UG GUC CUC UGCUGGCU UUCGC@LB@ |:|| ||| |||| |||| ||||||| || ||| :||||| || ||| ||| |:|:|||| :||||@LB@ GGCA CUA CGGA UACU CCUCUAU AG GGC UGACGC AC CAG GAG AUGGCCGA GAGCG@LB@3'-UUU...UUUUU AU C U ACUUCUCA C A UCGA CUA CUGGU...GUU-5'@LB@ | |@LB@ 119 43@LB@@LB@@LB@Energy -14.62 kcal/mol@LB@Hybridization Energy -54.201 kcal/mol@LB@Unfolding Energy - mRNA 16.2747 kcal/mol@LB@Unfolding Energy - sRNA 23.3102 kcal/mol@LB@@LB@Position - mRNA 166 -- 238@LB@Position - sRNA 44 -- 118@LB@Position Seed - mRNA 227 -- 233@LB@Position Seed - sRNA 52 -- 58@LB@ |
| 59 |
0.0005101 |
0.0395 |
pa2173a |
N/A |
-13.53 |
0.026409 |
139 -- 150 |
107 -- 119 |
|
|
_____________138___________151\n_____________|_____________|\n5'-CAA...AACCU_____________AUGGG...CCC-3'\n______________GCCGUGAU_AGCC\n______________:|||||||_||||\n______________UGGCACUA_UCGG\n3'-UUU...GUUUU________A____ACUAC...GUU-5'\n_____________|_____________|\n_____________120___________106\n |
140 -- 146 |
112 -- 118 |
-18.4805 kcal/mol |
2.71645 kcal/mol |
2.23484 kcal/mol |
138 151@LB@ | |@LB@5'-CAA...AACCU AUGGG...CCC-3'@LB@ GCCGUGAU AGCC@LB@ :||||||| ||||@LB@ UGGCACUA UCGG@LB@3'-UUU...GUUUU A ACUAC...GUU-5'@LB@ | |@LB@ 120 106@LB@@LB@@LB@Energy -13.53 kcal/mol@LB@Hybridization Energy -18.4805 kcal/mol@LB@Unfolding Energy - mRNA 2.71645 kcal/mol@LB@Unfolding Energy - sRNA 2.23484 kcal/mol@LB@@LB@Position - mRNA 139 -- 150@LB@Position - sRNA 107 -- 119@LB@Position Seed - mRNA 140 -- 146@LB@Position Seed - sRNA 112 -- 118@LB@ |
| 60 |
0.000522 |
0.0395 |
pa1477 |
ccmC |
-13.58 |
0.025601 |
178 -- 207 |
98 -- 123 |
heme exporter protein CcmC |
|
_____________177____________________________208\n_____________|______________________________|\n5'-GCG...UUCCA_______C__UAAACAG__________U__AUUGG...UGC-3'\n______________AAGAGCC_UG_______AGCCUGAUGA_GA\n______________||:|:||_||_______||||||||||_||\n______________UUUUUGG_AC_______UCGGACUACU_CU\n3'-UUU...CCCAG_______C__UAA______________C__CUAUU...GUU-5'\n_____________|______________________________|\n_____________124____________________________97\n |
198 -- 204 |
101 -- 107 |
-23.0207 kcal/mol |
7.19156 kcal/mol |
2.25245 kcal/mol |
177 208@LB@ | |@LB@5'-GCG...UUCCA C UAAACAG U AUUGG...UGC-3'@LB@ AAGAGCC UG AGCCUGAUGA GA@LB@ ||:|:|| || |||||||||| ||@LB@ UUUUUGG AC UCGGACUACU CU@LB@3'-UUU...CCCAG C UAA C CUAUU...GUU-5'@LB@ | |@LB@ 124 97@LB@@LB@@LB@Energy -13.58 kcal/mol@LB@Hybridization Energy -23.0207 kcal/mol@LB@Unfolding Energy - mRNA 7.19156 kcal/mol@LB@Unfolding Energy - sRNA 2.25245 kcal/mol@LB@@LB@Position - mRNA 178 -- 207@LB@Position - sRNA 98 -- 123@LB@Position Seed - mRNA 198 -- 204@LB@Position Seed - sRNA 101 -- 107@LB@ |
| 61 |
0.0005242 |
0.0395 |
pa4564 |
N/A |
-14.31 |
0.016198 |
190 -- 242 |
35 -- 89 |
'Product name confidence: class 4 (Homologs of previously reported genes of unknown function or no similarity to any previously reported sequences)' |
|
_____________189______________________________________________________243\n_____________|________________________________________________________|\n5'-AGC...UCUGA______GG___A____CAAG____GCG__G_______G_________U________CCGGC...UCG-3'\n______________GGAGAG__CGA_UGCG_____CUC___GG_UUGCUGG_UGGUCU_GC_GCU_GUUG\n______________|:||||__|||_||||_____|||___:|_||:|:||_||:|||_||_:|:_||||\n______________CUUCUC__GCU_ACGC_____GAG___UC_AAUGGCC_ACUAGA_CG_UGG_CAAC\n3'-UUU...UUAGA______AG___G____ACCCA___AG___G_______G______G__C___U____UCACU...GUU-5'\n_____________|________________________________________________________|\n_____________90_______________________________________________________34\n |
219 -- 225 |
54 -- 60 |
-52.8641 kcal/mol |
19.5279 kcal/mol |
19.034 kcal/mol |
189 243@LB@ | |@LB@5'-AGC...UCUGA GG A CAAG GCG G G U CCGGC...UCG-3'@LB@ GGAGAG CGA UGCG CUC GG UUGCUGG UGGUCU GC GCU GUUG@LB@ |:|||| ||| |||| ||| :| ||:|:|| ||:||| || :|: ||||@LB@ CUUCUC GCU ACGC GAG UC AAUGGCC ACUAGA CG UGG CAAC@LB@3'-UUU...UUAGA AG G ACCCA AG G G G C U UCACU...GUU-5'@LB@ | |@LB@ 90 34@LB@@LB@@LB@Energy -14.31 kcal/mol@LB@Hybridization Energy -52.8641 kcal/mol@LB@Unfolding Energy - mRNA 19.5279 kcal/mol@LB@Unfolding Energy - sRNA 19.034 kcal/mol@LB@@LB@Position - mRNA 190 -- 242@LB@Position - sRNA 35 -- 89@LB@Position Seed - mRNA 219 -- 225@LB@Position Seed - sRNA 54 -- 60@LB@ |
| 62 |
0.0005356 |
0.0397 |
pa5012 |
waaF |
-13.04 |
0.035456 |
194 -- 235 |
70 -- 110 |
heptosyltransferase II |
|
_____________193___________________________________________236\n_____________|_____________________________________________|\n5'-ACG...UCCGG_______AU______AU______UCGUA_____CUC___G_____GGACA...UCG-3'\n______________AGCCUGA____GAGA___UCUGA_____GGUCC___CUG_GUGGG\n______________|||||||____||||___|||||_____:||||___|||_|||||\n______________UCGGACU____CUCU___AGACU_____UCAGG___GAC_CACCC\n3'-UUU...ACUAA_______ACUC____AUU_____UC________CU____G_____AGAGA...GUU-5'\n_____________|_____________________________________________|\n_____________111___________________________________________69\n |
194 -- 200 |
104 -- 110 |
-40.3278 kcal/mol |
14.3527 kcal/mol |
12.939 kcal/mol |
193 236@LB@ | |@LB@5'-ACG...UCCGG AU AU UCGUA CUC G GGACA...UCG-3'@LB@ AGCCUGA GAGA UCUGA GGUCC CUG GUGGG@LB@ ||||||| |||| ||||| :|||| ||| |||||@LB@ UCGGACU CUCU AGACU UCAGG GAC CACCC@LB@3'-UUU...ACUAA ACUC AUU UC CU G AGAGA...GUU-5'@LB@ | |@LB@ 111 69@LB@@LB@@LB@Energy -13.04 kcal/mol@LB@Hybridization Energy -40.3278 kcal/mol@LB@Unfolding Energy - mRNA 14.3527 kcal/mol@LB@Unfolding Energy - sRNA 12.939 kcal/mol@LB@@LB@Position - mRNA 194 -- 235@LB@Position - sRNA 70 -- 110@LB@Position Seed - mRNA 194 -- 200@LB@Position Seed - sRNA 104 -- 110@LB@ |
| 63 |
0.0005567 |
0.04061 |
pa4538 |
ndh |
-15.78 |
0.005953 |
57 -- 71 |
102 -- 118 |
NADH dehydrogenase |
|
_____________56________________72\n_____________|_________________|\n5'-AGG...UCCGC_________________UUCGU...UCA-3'\n______________CCGUGGUU__CCUGAUG\n______________|||||:||__|||||||\n______________GGCACUAA__GGACUAC\n3'-UUU...UUUUU________UC_______UCCUC...GUU-5'\n_____________|_________________|\n_____________119_______________101\n |
65 -- 71 |
102 -- 108 |
-20.7877 kcal/mol |
2.76363 kcal/mol |
2.2426 kcal/mol |
56 72@LB@ | |@LB@5'-AGG...UCCGC UUCGU...UCA-3'@LB@ CCGUGGUU CCUGAUG@LB@ |||||:|| |||||||@LB@ GGCACUAA GGACUAC@LB@3'-UUU...UUUUU UC UCCUC...GUU-5'@LB@ | |@LB@ 119 101@LB@@LB@@LB@Energy -15.78 kcal/mol@LB@Hybridization Energy -20.7877 kcal/mol@LB@Unfolding Energy - mRNA 2.76363 kcal/mol@LB@Unfolding Energy - sRNA 2.2426 kcal/mol@LB@@LB@Position - mRNA 57 -- 71@LB@Position - sRNA 102 -- 118@LB@Position Seed - mRNA 65 -- 71@LB@Position Seed - sRNA 102 -- 108@LB@ |
| 64 |
0.000634 |
0.04553 |
pa1832 |
N/A |
-15.82 |
0.005823 |
184 -- 249 |
39 -- 110 |
protease |
|
_____________183________________________________________________________________________250\n_____________|__________________________________________________________________________|\n5'-GUA...UCAAC___A____________UG____U_____________CGAAUAUGCG______U_____CAG_____________UGCUG...GCC-3'\n______________AGU__GA_GAGGGGGU____UG_GGAGUUC_AUUGC___________GGCUU_CUGGC___GA_C_CGUGACCG\n______________||:__||_||||:|:|____||_:||||:|_|:|||___________:||||_|:|||___||_|_||:||||:\n______________UCG__CU_CUCCUCUA____AC_UCUCAGG_UGACG___________UCGAA_GGCCG___CU_G_GCGCUGGU\n3'-UUU...ACUAA___GA__A________UUAG__U_______C_____CACCCAGAGAG_____U_____A____A_A________CAACU...GUU-5'\n_____________|__________________________________________________________________________|\n_____________111________________________________________________________________________38\n |
243 -- 249 |
39 -- 45 |
-57.1706 kcal/mol |
17.9919 kcal/mol |
23.3669 kcal/mol |
183 250@LB@ | |@LB@5'-GUA...UCAAC A UG U CGAAUAUGCG U CAG UGCUG...GCC-3'@LB@ AGU GA GAGGGGGU UG GGAGUUC AUUGC GGCUU CUGGC GA C CGUGACCG@LB@ ||: || ||||:|:| || :||||:| |:||| :|||| |:||| || | ||:||||:@LB@ UCG CU CUCCUCUA AC UCUCAGG UGACG UCGAA GGCCG CU G GCGCUGGU@LB@3'-UUU...ACUAA GA A UUAG U C CACCCAGAGAG U A A A CAACU...GUU-5'@LB@ | |@LB@ 111 38@LB@@LB@@LB@Energy -15.82 kcal/mol@LB@Hybridization Energy -57.1706 kcal/mol@LB@Unfolding Energy - mRNA 17.9919 kcal/mol@LB@Unfolding Energy - sRNA 23.3669 kcal/mol@LB@@LB@Position - mRNA 184 -- 249@LB@Position - sRNA 39 -- 110@LB@Position Seed - mRNA 243 -- 249@LB@Position Seed - sRNA 39 -- 45@LB@ |
| 66 |
0.0006609 |
0.04603 |
pa1980 |
eraR |
-16.49 |
0.003558 |
189 -- 219 |
71 -- 102 |
response regulator EraR |
|
_____________188_______________________________220\n_____________|_________________________________|\n5'-GUG...ACUGA_______GGACGA__________U_________ACGAU...GCG-3'\n______________GAGGAGA______UGAAG_GUCC_GCUG_GUGG\n______________|||||||______|||||_||||_:|||_||||\n______________CUCCUCU______ACUUC_CAGG_UGAC_CACC\n3'-UUU...GACUA_______AUUAG______U____C____G____CAGAG...GUU-5'\n_____________|_________________________________|\n_____________103_______________________________70\n |
189 -- 195 |
96 -- 102 |
-37.796 kcal/mol |
12.0241 kcal/mol |
9.28371 kcal/mol |
188 220@LB@ | |@LB@5'-GUG...ACUGA GGACGA U ACGAU...GCG-3'@LB@ GAGGAGA UGAAG GUCC GCUG GUGG@LB@ ||||||| ||||| |||| :||| ||||@LB@ CUCCUCU ACUUC CAGG UGAC CACC@LB@3'-UUU...GACUA AUUAG U C G CAGAG...GUU-5'@LB@ | |@LB@ 103 70@LB@@LB@@LB@Energy -16.49 kcal/mol@LB@Hybridization Energy -37.796 kcal/mol@LB@Unfolding Energy - mRNA 12.0241 kcal/mol@LB@Unfolding Energy - sRNA 9.28371 kcal/mol@LB@@LB@Position - mRNA 189 -- 219@LB@Position - sRNA 71 -- 102@LB@Position Seed - mRNA 189 -- 195@LB@Position Seed - sRNA 96 -- 102@LB@ |
| 67 |
0.0007208 |
0.0493 |
pa0304 |
spuH |
-8.66 |
0.319981 |
266 -- 281 |
40 -- 54 |
polyamine transporter PotI |
|
_____________265______________282\n_____________|________________|\n5'-CAA...CCGAU_______C_G______UAUUC...CCA-3'\n______________GCUGAUC_U_GUGAUC\n______________|||||||_|_|:||:|\n______________CGACUAG_A_CGCUGG\n3'-UUU...AUGGC_________G______UCAAC...GUU-5'\n_____________|________________|\n_____________55_______________39\n |
266 -- 272 |
48 -- 54 |
-20.1848 kcal/mol |
3.44761 kcal/mol |
8.07324 kcal/mol |
265 282@LB@ | |@LB@5'-CAA...CCGAU C G UAUUC...CCA-3'@LB@ GCUGAUC U GUGAUC@LB@ ||||||| | |:||:|@LB@ CGACUAG A CGCUGG@LB@3'-UUU...AUGGC G UCAAC...GUU-5'@LB@ | |@LB@ 55 39@LB@@LB@@LB@Energy -8.66 kcal/mol@LB@Hybridization Energy -20.1848 kcal/mol@LB@Unfolding Energy - mRNA 3.44761 kcal/mol@LB@Unfolding Energy - sRNA 8.07324 kcal/mol@LB@@LB@Position - mRNA 266 -- 281@LB@Position - sRNA 40 -- 54@LB@Position Seed - mRNA 266 -- 272@LB@Position Seed - sRNA 48 -- 54@LB@ |
