| 46 |
0.0003006 |
0.02946 |
pa4460 |
N/A |
-9.10 |
0.267813 |
234 -- 244 |
75 -- 85 |
'Product name confidence: class 4 (Homologs of previously reported genes of unknown function or no similarity to any previously reported sequences)' |
|
_____________233_________245\n_____________|___________|\n5'-GCG...UUUUC___________CGCCC...UCC-3'\n______________GGUCUGACUGC\n______________:|||:||||||\n______________UCAGGCUGACG\n3'-UUU...ACUUC___________CACCC...GUU-5'\n_____________|___________|\n_____________86__________74\n |
238 -- 244 |
75 -- 81 |
-18.7561 kcal/mol |
4.01129 kcal/mol |
5.64974 kcal/mol |
233 245@LB@ | |@LB@5'-GCG...UUUUC CGCCC...UCC-3'@LB@ GGUCUGACUGC@LB@ :|||:||||||@LB@ UCAGGCUGACG@LB@3'-UUU...ACUUC CACCC...GUU-5'@LB@ | |@LB@ 86 74@LB@@LB@@LB@Energy -9.10 kcal/mol@LB@Hybridization Energy -18.7561 kcal/mol@LB@Unfolding Energy - mRNA 4.01129 kcal/mol@LB@Unfolding Energy - sRNA 5.64974 kcal/mol@LB@@LB@Position - mRNA 234 -- 244@LB@Position - sRNA 75 -- 85@LB@Position Seed - mRNA 238 -- 244@LB@Position Seed - sRNA 75 -- 81@LB@ |
| 47 |
0.0003012 |
0.02946 |
pa1776 |
sigX |
-11.73 |
0.074706 |
90 -- 102 |
103 -- 115 |
RNA polymerase sigma factor SigX |
|
_____________89____________103\n_____________|_____________|\n5'-CGU...CGAUA___C_________CUCAC...UGU-3'\n______________UGA_UGGCCUGAU\n______________|||_|:|||||||\n______________ACU_AUCGGACUA\n3'-UUU...UUGGC___A_________CUCCU...GUU-5'\n_____________|_____________|\n_____________116___________102\n |
96 -- 102 |
103 -- 109 |
-16.1519 kcal/mol |
2.30076 kcal/mol |
2.12156 kcal/mol |
89 103@LB@ | |@LB@5'-CGU...CGAUA C CUCAC...UGU-3'@LB@ UGA UGGCCUGAU@LB@ ||| |:|||||||@LB@ ACU AUCGGACUA@LB@3'-UUU...UUGGC A CUCCU...GUU-5'@LB@ | |@LB@ 116 102@LB@@LB@@LB@Energy -11.73 kcal/mol@LB@Hybridization Energy -16.1519 kcal/mol@LB@Unfolding Energy - mRNA 2.30076 kcal/mol@LB@Unfolding Energy - sRNA 2.12156 kcal/mol@LB@@LB@Position - mRNA 90 -- 102@LB@Position - sRNA 103 -- 115@LB@Position Seed - mRNA 96 -- 102@LB@Position Seed - sRNA 103 -- 109@LB@ |
| 48 |
0.0003226 |
0.03063 |
pa2507 |
catA |
-12.73 |
0.042466 |
203 -- 291 |
39 -- 120 |
catechol 1 2-dioxygenase |
|
_____________202_______________________________________________________________________________________________292\n_____________|_________________________________________________________________________________________________|\n5'-AUC...GCCAU________AGAUUUCCCAGACU________UCC__CGCU___UC______G__A______GCCAG______A_GA__G______________C____AGGCC...UGG-3'\n______________GACCGUGA______________GCC_GAUG___AG____UCU__GAAGAG_CC____GCG_______CUCA_C__AC_CGGC_GAUC_CGCG_ACCA\n______________:|||||||______________|||_||||___||____|||__||||||_||____|||_______||||_|__||_||||_||||_||||_||||\n______________UUGGCACU______________CGG_CUAC___UC____AGA__CUUCUC_GG____CGC_______GAGU_G__UG_GCCG_CUAG_GCGC_UGGU\n3'-UUU...AGUUU________AAU______________A____UCC__UAUU___________A__CUGA___ACCCAGA____C_AA_______A____A_________CAACU...GUU-5'\n_____________|_________________________________________________________________________________________________|\n_____________121_______________________________________________________________________________________________38\n |
204 -- 210 |
113 -- 119 |
-61.825 kcal/mol |
25.692 kcal/mol |
23.4063 kcal/mol |
202 292@LB@ | |@LB@5'-AUC...GCCAU AGAUUUCCCAGACU UCC CGCU UC G A GCCAG A GA G C AGGCC...UGG-3'@LB@ GACCGUGA GCC GAUG AG UCU GAAGAG CC GCG CUCA C AC CGGC GAUC CGCG ACCA@LB@ :||||||| ||| |||| || ||| |||||| || ||| |||| | || |||| |||| |||| ||||@LB@ UUGGCACU CGG CUAC UC AGA CUUCUC GG CGC GAGU G UG GCCG CUAG GCGC UGGU@LB@3'-UUU...AGUUU AAU A UCC UAUU A CUGA ACCCAGA C AA A A CAACU...GUU-5'@LB@ | |@LB@ 121 38@LB@@LB@@LB@Energy -12.73 kcal/mol@LB@Hybridization Energy -61.825 kcal/mol@LB@Unfolding Energy - mRNA 25.692 kcal/mol@LB@Unfolding Energy - sRNA 23.4063 kcal/mol@LB@@LB@Position - mRNA 203 -- 291@LB@Position - sRNA 39 -- 120@LB@Position Seed - mRNA 204 -- 210@LB@Position Seed - sRNA 113 -- 119@LB@ |
| 49 |
0.0003265 |
0.03063 |
pa0541 |
N/A |
-11.15 |
0.101438 |
170 -- 235 |
53 -- 118 |
'Product name confidence: class 4 (Homologs of previously reported genes of unknown function or no similarity to any previously reported sequences)' |
|
_____________169________________________________________________________________________236\n_____________|__________________________________________________________________________|\n5'-CUA...CGCUU_______CGAC_____AAAAA___CCUUGCCA_____CUGA___________UC_____GU_____________CGGCG...CGA-3'\n______________CCGUGAU____CCUGA_____GAG________UGAAG____AGUCC__CUGC____GUC_____GC_UGCUGGC\n______________|||||||____|||||_____|||________|||||____|||||__||||____|||_____||_|:|:|||\n______________GGCACUA____GGACU_____CUC________ACUUC____UCAGG__GACG____CAG_____CG_AUGGCCG\n3'-UUU...UUUUU_______AUC______ACUC____UAUUAG________________CU____CACC___AGAGU__A_______ACUAG...GUU-5'\n_____________|__________________________________________________________________________|\n_____________119________________________________________________________________________52\n |
229 -- 235 |
53 -- 59 |
-46.4373 kcal/mol |
16.5866 kcal/mol |
18.7053 kcal/mol |
169 236@LB@ | |@LB@5'-CUA...CGCUU CGAC AAAAA CCUUGCCA CUGA UC GU CGGCG...CGA-3'@LB@ CCGUGAU CCUGA GAG UGAAG AGUCC CUGC GUC GC UGCUGGC@LB@ ||||||| ||||| ||| ||||| ||||| |||| ||| || |:|:|||@LB@ GGCACUA GGACU CUC ACUUC UCAGG GACG CAG CG AUGGCCG@LB@3'-UUU...UUUUU AUC ACUC UAUUAG CU CACC AGAGU A ACUAG...GUU-5'@LB@ | |@LB@ 119 52@LB@@LB@@LB@Energy -11.15 kcal/mol@LB@Hybridization Energy -46.4373 kcal/mol@LB@Unfolding Energy - mRNA 16.5866 kcal/mol@LB@Unfolding Energy - sRNA 18.7053 kcal/mol@LB@@LB@Position - mRNA 170 -- 235@LB@Position - sRNA 53 -- 118@LB@Position Seed - mRNA 229 -- 235@LB@Position Seed - sRNA 53 -- 59@LB@ |
| 50 |
0.0003784 |
0.03426 |
pa2805 |
N/A |
-14.24 |
0.016920 |
210 -- 223 |
74 -- 88 |
'Product name confidence: class 4 (Homologs of previously reported genes of unknown function or no similarity to any previously reported sequences)' |
|
_____________209_____________224\n_____________|_______________|\n5'-GCG...CGAAA_______________CGAAC...UCC-3'\n______________GAGAGUCUG_CUGCG\n______________:||||||:|_|||||\n______________UUCUCAGGC_GACGC\n3'-UUU...UAGAC_________U_____ACCCA...GUU-5'\n_____________|_______________|\n_____________89______________73\n |
212 -- 218 |
80 -- 86 |
-22.4876 kcal/mol |
2.4453 kcal/mol |
5.80631 kcal/mol |
209 224@LB@ | |@LB@5'-GCG...CGAAA CGAAC...UCC-3'@LB@ GAGAGUCUG CUGCG@LB@ :||||||:| |||||@LB@ UUCUCAGGC GACGC@LB@3'-UUU...UAGAC U ACCCA...GUU-5'@LB@ | |@LB@ 89 73@LB@@LB@@LB@Energy -14.24 kcal/mol@LB@Hybridization Energy -22.4876 kcal/mol@LB@Unfolding Energy - mRNA 2.4453 kcal/mol@LB@Unfolding Energy - sRNA 5.80631 kcal/mol@LB@@LB@Position - mRNA 210 -- 223@LB@Position - sRNA 74 -- 88@LB@Position Seed - mRNA 212 -- 218@LB@Position Seed - sRNA 80 -- 86@LB@ |
| 51 |
0.0003802 |
0.03426 |
pa4431 |
N/A |
-18.94 |
0.000478 |
156 -- 218 |
72 -- 123 |
iron-sulfur protein |
|
_____________155________________________________________________________________219\n_____________|__________________________________________________________________|\n5'-UAU...UACUU_______________AACAGGUCUGAAG____________C________U____AA____G_____AAUGC...UCG-3'\n______________AAAGGCC_UGAUUAG_____________CUGAUG_GGAGA_GA_CUGAA_GAGU__UGAC_GCGUG\n______________|||::||_|||||||_____________||||||_|||||_:|_|||||_||||__:|||_|||||\n______________UUUUUGG_ACUAAUC_____________GACUAC_CCUCU_UU_GACUU_CUCA__GCUG_CGCAC\n3'-UUU...CCCAG_______C_______G__________________U_____A__A__________G_____A_____CCAGA...GUU-5'\n_____________|__________________________________________________________________|\n_____________124________________________________________________________________71\n |
163 -- 169 |
109 -- 115 |
-49.3111 kcal/mol |
18.1339 kcal/mol |
12.2386 kcal/mol |
155 219@LB@ | |@LB@5'-UAU...UACUU AACAGGUCUGAAG C U AA G AAUGC...UCG-3'@LB@ AAAGGCC UGAUUAG CUGAUG GGAGA GA CUGAA GAGU UGAC GCGUG@LB@ |||::|| ||||||| |||||| ||||| :| ||||| |||| :||| |||||@LB@ UUUUUGG ACUAAUC GACUAC CCUCU UU GACUU CUCA GCUG CGCAC@LB@3'-UUU...CCCAG C G U A A G A CCAGA...GUU-5'@LB@ | |@LB@ 124 71@LB@@LB@@LB@Energy -18.94 kcal/mol@LB@Hybridization Energy -49.3111 kcal/mol@LB@Unfolding Energy - mRNA 18.1339 kcal/mol@LB@Unfolding Energy - sRNA 12.2386 kcal/mol@LB@@LB@Position - mRNA 156 -- 218@LB@Position - sRNA 72 -- 123@LB@Position Seed - mRNA 163 -- 169@LB@Position Seed - sRNA 109 -- 115@LB@ |
| 52 |
0.0004019 |
0.03518 |
pa4012 |
N/A |
-10.34 |
0.152385 |
122 -- 132 |
100 -- 110 |
'Product name confidence: class 4 (Homologs of previously reported genes of unknown function or no similarity to any previously reported sequences)' |
|
_____________121_________133\n_____________|___________|\n5'-CAU...CGAUG___________CGUUG...GCU-3'\n______________AGCCUGAUGGG\n______________|||||||||:|\n______________UCGGACUACUC\n3'-UUU...ACUAA___________CUCUA...GUU-5'\n_____________|___________|\n_____________111_________99\n |
126 -- 132 |
100 -- 106 |
-17.6316 kcal/mol |
5.13362 kcal/mol |
2.15723 kcal/mol |
121 133@LB@ | |@LB@5'-CAU...CGAUG CGUUG...GCU-3'@LB@ AGCCUGAUGGG@LB@ |||||||||:|@LB@ UCGGACUACUC@LB@3'-UUU...ACUAA CUCUA...GUU-5'@LB@ | |@LB@ 111 99@LB@@LB@@LB@Energy -10.34 kcal/mol@LB@Hybridization Energy -17.6316 kcal/mol@LB@Unfolding Energy - mRNA 5.13362 kcal/mol@LB@Unfolding Energy - sRNA 2.15723 kcal/mol@LB@@LB@Position - mRNA 122 -- 132@LB@Position - sRNA 100 -- 110@LB@Position Seed - mRNA 126 -- 132@LB@Position Seed - sRNA 100 -- 106@LB@ |
| 53 |
0.0004056 |
0.03518 |
pa1750 |
N/A |
-9.05 |
0.272805 |
157 -- 194 |
32 -- 72 |
phospho-2-dehydro-3-deoxyheptonate aldolase |
|
_____________156________________________________________195\n_____________|__________________________________________|\n5'-ACU...GCAGG___C___C____G_______GC___________U_A______ACCAC...CCC-3'\n______________GGG_CUC_CGGC__GCCGGC____C_CGUGACC_G_UUGAGU\n______________|||_|||_|:||__:|||||____|_||:||||_|_||||||\n______________CCC_GAG_GUCG__UGGCCG____G_GCGCUGG_C_AACUCA\n3'-UUU...ACGCA___A___A____AA______ACUA_A_______U________CUGUA...GUU-5'\n_____________|__________________________________________|\n_____________73_________________________________________31\n |
179 -- 185 |
40 -- 46 |
-44.8167 kcal/mol |
16.8729 kcal/mol |
18.8965 kcal/mol |
156 195@LB@ | |@LB@5'-ACU...GCAGG C C G GC U A ACCAC...CCC-3'@LB@ GGG CUC CGGC GCCGGC C CGUGACC G UUGAGU@LB@ ||| ||| |:|| :||||| | ||:|||| | ||||||@LB@ CCC GAG GUCG UGGCCG G GCGCUGG C AACUCA@LB@3'-UUU...ACGCA A A AA ACUA A U CUGUA...GUU-5'@LB@ | |@LB@ 73 31@LB@@LB@@LB@Energy -9.05 kcal/mol@LB@Hybridization Energy -44.8167 kcal/mol@LB@Unfolding Energy - mRNA 16.8729 kcal/mol@LB@Unfolding Energy - sRNA 18.8965 kcal/mol@LB@@LB@Position - mRNA 157 -- 194@LB@Position - sRNA 32 -- 72@LB@Position Seed - mRNA 179 -- 185@LB@Position Seed - sRNA 40 -- 46@LB@ |
| 54 |
0.000431 |
0.03637 |
pa5355 |
glcD |
-9.87 |
0.190611 |
164 -- 178 |
41 -- 54 |
glycolate oxidase subunit GlcD |
|
_____________163_____________179\n_____________|_______________|\n5'-GCU...CGCUU_______C__C____AACCA...AAC-3'\n______________GCUGAUC_CG_CGAC\n______________|||||||_||_||||\n______________CGACUAG_GC_GCUG\n3'-UUU...AUGGC_______A_______GUCAA...GUU-5'\n_____________|_______________|\n_____________55______________40\n |
164 -- 170 |
48 -- 54 |
-19.1225 kcal/mol |
2.27094 kcal/mol |
6.98983 kcal/mol |
163 179@LB@ | |@LB@5'-GCU...CGCUU C C AACCA...AAC-3'@LB@ GCUGAUC CG CGAC@LB@ ||||||| || ||||@LB@ CGACUAG GC GCUG@LB@3'-UUU...AUGGC A GUCAA...GUU-5'@LB@ | |@LB@ 55 40@LB@@LB@@LB@Energy -9.87 kcal/mol@LB@Hybridization Energy -19.1225 kcal/mol@LB@Unfolding Energy - mRNA 2.27094 kcal/mol@LB@Unfolding Energy - sRNA 6.98983 kcal/mol@LB@@LB@Position - mRNA 164 -- 178@LB@Position - sRNA 41 -- 54@LB@Position Seed - mRNA 164 -- 170@LB@Position Seed - sRNA 48 -- 54@LB@ |
| 55 |
0.0004353 |
0.03637 |
pa0086 |
N/A |
-16.64 |
0.003171 |
21 -- 37 |
100 -- 117 |
'Product name confidence: class 4 (Homologs of previously reported genes of unknown function or no similarity to any previously reported sequences)' |
|
_____________20_________________38\n_____________|__________________|\n5'-GGC...CAGAA____CA____________CCGGC...ACG-3'\n______________CGUG___GGCCUGAUGAG\n______________||||___:||||||||||\n______________GCAC___UCGGACUACUC\n3'-UUU...UUUUG____UAA___________CUCUA...GUU-5'\n_____________|__________________|\n_____________118________________99\n |
31 -- 37 |
100 -- 106 |
-24.5052 kcal/mol |
5.62761 kcal/mol |
2.23711 kcal/mol |
20 38@LB@ | |@LB@5'-GGC...CAGAA CA CCGGC...ACG-3'@LB@ CGUG GGCCUGAUGAG@LB@ |||| :||||||||||@LB@ GCAC UCGGACUACUC@LB@3'-UUU...UUUUG UAA CUCUA...GUU-5'@LB@ | |@LB@ 118 99@LB@@LB@@LB@Energy -16.64 kcal/mol@LB@Hybridization Energy -24.5052 kcal/mol@LB@Unfolding Energy - mRNA 5.62761 kcal/mol@LB@Unfolding Energy - sRNA 2.23711 kcal/mol@LB@@LB@Position - mRNA 21 -- 37@LB@Position - sRNA 100 -- 117@LB@Position Seed - mRNA 31 -- 37@LB@Position Seed - sRNA 100 -- 106@LB@ |
