| 167 |
0.004312 |
0.117 |
pa2583 |
N/A |
-13.54 |
0.026172 |
146 -- 169 |
69 -- 89 |
sensor/response regulator hybrid protein |
pa3044 pa3946 pa4982 pa1611 |
_____________145______________________170\n_____________|________________________|\n5'-CCU...UGCCA___C____G_____AG________UCCUG...UGA-3'\n______________GAG_GAGU_UCGAC__GCGUGGGU\n______________||:_||||_:||||__||||||||\n______________CUU_CUCA_GGCUG__CGCACCCA\n3'-UUU...UUAGA______________A_________GAGAG...GUU-5'\n_____________|________________________|\n_____________90_______________________68\n |
163 -- 169 |
69 -- 75 |
-28.6669 kcal/mol |
9.05998 kcal/mol |
6.06593 kcal/mol |
145 170@LB@ | |@LB@5'-CCU...UGCCA C G AG UCCUG...UGA-3'@LB@ GAG GAGU UCGAC GCGUGGGU@LB@ ||: |||| :|||| ||||||||@LB@ CUU CUCA GGCUG CGCACCCA@LB@3'-UUU...UUAGA A GAGAG...GUU-5'@LB@ | |@LB@ 90 68@LB@@LB@@LB@Energy -13.54 kcal/mol@LB@Hybridization Energy -28.6669 kcal/mol@LB@Unfolding Energy - mRNA 9.05998 kcal/mol@LB@Unfolding Energy - sRNA 6.06593 kcal/mol@LB@@LB@Position - mRNA 146 -- 169@LB@Position - sRNA 69 -- 89@LB@Position Seed - mRNA 163 -- 169@LB@Position Seed - sRNA 69 -- 75@LB@ |
| 168 |
0.004312 |
0.117 |
pa2583 |
N/A |
-13.54 |
0.026172 |
146 -- 169 |
69 -- 89 |
sensor/response regulator hybrid protein |
pa3044 pa3946 pa4982 pa1611 |
_____________145______________________170\n_____________|________________________|\n5'-CCU...UGCCA___C____G_____AG________UCCUG...UGA-3'\n______________GAG_GAGU_UCGAC__GCGUGGGU\n______________||:_||||_:||||__||||||||\n______________CUU_CUCA_GGCUG__CGCACCCA\n3'-UUU...UUAGA______________A_________GAGAG...GUU-5'\n_____________|________________________|\n_____________90_______________________68\n |
163 -- 169 |
69 -- 75 |
-28.6669 kcal/mol |
9.05998 kcal/mol |
6.06593 kcal/mol |
145 170@LB@ | |@LB@5'-CCU...UGCCA C G AG UCCUG...UGA-3'@LB@ GAG GAGU UCGAC GCGUGGGU@LB@ ||: |||| :|||| ||||||||@LB@ CUU CUCA GGCUG CGCACCCA@LB@3'-UUU...UUAGA A GAGAG...GUU-5'@LB@ | |@LB@ 90 68@LB@@LB@@LB@Energy -13.54 kcal/mol@LB@Hybridization Energy -28.6669 kcal/mol@LB@Unfolding Energy - mRNA 9.05998 kcal/mol@LB@Unfolding Energy - sRNA 6.06593 kcal/mol@LB@@LB@Position - mRNA 146 -- 169@LB@Position - sRNA 69 -- 89@LB@Position Seed - mRNA 163 -- 169@LB@Position Seed - sRNA 69 -- 75@LB@ |
| 157 |
0.003825 |
0.112 |
pa0687 |
N/A |
-10.29 |
0.156397 |
189 -- 203 |
102 -- 118 |
type II secretion system protein |
pa3102 |
_____________188_______________204\n_____________|_________________|\n5'-AGC...GUGAC___G__C__________CAGAC...GCG-3'\n______________CCG_GA___GCCUGAUG\n______________|||_||___||||||||\n______________GGC_CU___CGGACUAC\n3'-UUU...UUUUU___A__AAU________UCCUC...GUU-5'\n_____________|_________________|\n_____________119_______________101\n |
197 -- 203 |
102 -- 108 |
-18.3707 kcal/mol |
5.84542 kcal/mol |
2.2426 kcal/mol |
188 204@LB@ | |@LB@5'-AGC...GUGAC G C CAGAC...GCG-3'@LB@ CCG GA GCCUGAUG@LB@ ||| || ||||||||@LB@ GGC CU CGGACUAC@LB@3'-UUU...UUUUU A AAU UCCUC...GUU-5'@LB@ | |@LB@ 119 101@LB@@LB@@LB@Energy -10.29 kcal/mol@LB@Hybridization Energy -18.3707 kcal/mol@LB@Unfolding Energy - mRNA 5.84542 kcal/mol@LB@Unfolding Energy - sRNA 2.2426 kcal/mol@LB@@LB@Position - mRNA 189 -- 203@LB@Position - sRNA 102 -- 118@LB@Position Seed - mRNA 197 -- 203@LB@Position Seed - sRNA 102 -- 108@LB@ |
| 20 |
4.966e-05 |
0.01105 |
pa5388 |
N/A |
-18.86 |
0.000517 |
168 -- 251 |
37 -- 123 |
'Product name confidence: class 4:Homologs of previously reported genes of unknown function or no similarity to any previously reported sequences.' |
pa3236 pa0030 pa5378 |
_____________167________________________________________________________________________________________252\n_____________|__________________________________________________________________________________________|\n5'-GGG...CGCAG______AAUCAA_____GCAC_______GACCGA______CGA________CCAG_____G____GC___CU__________________GGCGC...UGG-3'\n______________AAAAAC______UAGCC____GAGGGGA______UGAAGA___CGAUU_CG_______CU_GGCU__GCC__GCUGAUC_C_UGGCCAGU\n______________||||||______|||||____||||:||______||||||___|||:|_||_______||_:|||__:||__|||||||_|_:|:|||||\n______________UUUUUG______AUCGG____CUCCUCU______ACUUCU___GCUGA_GC_______GA_UCGA__UGG__CGACUAG_G_GCUGGUCA\n3'-UUU...CCCAG______GCACUA_____ACUA_______AUUAG_______CAG_____C__ACCCAGA__G____A____C________A_C________ACUCA...GUU-5'\n_____________|__________________________________________________________________________________________|\n_____________124________________________________________________________________________________________36\n |
245 -- 251 |
37 -- 43 |
-69.2339 kcal/mol |
26.9773 kcal/mol |
23.4067 kcal/mol |
167 252@LB@ | |@LB@5'-GGG...CGCAG AAUCAA GCAC GACCGA CGA CCAG G GC CU GGCGC...UGG-3'@LB@ AAAAAC UAGCC GAGGGGA UGAAGA CGAUU CG CU GGCU GCC GCUGAUC C UGGCCAGU@LB@ |||||| ||||| ||||:|| |||||| |||:| || || :||| :|| ||||||| | :|:|||||@LB@ UUUUUG AUCGG CUCCUCU ACUUCU GCUGA GC GA UCGA UGG CGACUAG G GCUGGUCA@LB@3'-UUU...CCCAG GCACUA ACUA AUUAG CAG C ACCCAGA G A C A C ACUCA...GUU-5'@LB@ | |@LB@ 124 36@LB@@LB@@LB@Energy -18.86 kcal/mol@LB@Hybridization Energy -69.2339 kcal/mol@LB@Unfolding Energy - mRNA 26.9773 kcal/mol@LB@Unfolding Energy - sRNA 23.4067 kcal/mol@LB@@LB@Position - mRNA 168 -- 251@LB@Position - sRNA 37 -- 123@LB@Position Seed - mRNA 245 -- 251@LB@Position Seed - sRNA 37 -- 43@LB@ |
| 145 |
0.003161 |
0.1002 |
pa4147 |
acoR |
-9.16 |
0.260996 |
230 -- 255 |
98 -- 121 |
transcriptional regulator AcoR |
pa4021 |
_____________229_________________________256\n_____________|___________________________|\n5'-UAG...CAUGU________UC_____G__UCC______ACGCC...UCG-3'\n______________GGACUGUG___AGCC_UG___UGAGGA\n______________::||:|||___||||_||___||||||\n______________UUUGGCAC___UCGG_AC___ACUCCU\n3'-UUU...CAGUU________UAA_______U________CUAUU...GUU-5'\n_____________|___________________________|\n_____________122_________________________97\n |
231 -- 237 |
114 -- 120 |
-22.6885 kcal/mol |
11.2814 kcal/mol |
2.25186 kcal/mol |
229 256@LB@ | |@LB@5'-UAG...CAUGU UC G UCC ACGCC...UCG-3'@LB@ GGACUGUG AGCC UG UGAGGA@LB@ ::||:||| |||| || ||||||@LB@ UUUGGCAC UCGG AC ACUCCU@LB@3'-UUU...CAGUU UAA U CUAUU...GUU-5'@LB@ | |@LB@ 122 97@LB@@LB@@LB@Energy -9.16 kcal/mol@LB@Hybridization Energy -22.6885 kcal/mol@LB@Unfolding Energy - mRNA 11.2814 kcal/mol@LB@Unfolding Energy - sRNA 2.25186 kcal/mol@LB@@LB@Position - mRNA 230 -- 255@LB@Position - sRNA 98 -- 121@LB@Position Seed - mRNA 231 -- 237@LB@Position Seed - sRNA 114 -- 120@LB@ |
| 109 |
0.001808 |
0.07562 |
pa0202 |
N/A |
-7.70 |
0.456423 |
178 -- 185 |
75 -- 82 |
amidase |
pa4342 |
_____________177______186\n_____________|________|\n5'-CCC...CCUUC________CAAGG...UGC-3'\n______________UCGACUGC\n______________:|||||||\n______________GGCUGACG\n3'-UUU...UCUCA________CACCC...GUU-5'\n_____________|________|\n_____________83_______74\n |
179 -- 185 |
75 -- 81 |
-13.4138 kcal/mol |
1.61599 kcal/mol |
4.09516 kcal/mol |
177 186@LB@ | |@LB@5'-CCC...CCUUC CAAGG...UGC-3'@LB@ UCGACUGC@LB@ :|||||||@LB@ GGCUGACG@LB@3'-UUU...UCUCA CACCC...GUU-5'@LB@ | |@LB@ 83 74@LB@@LB@@LB@Energy -7.70 kcal/mol@LB@Hybridization Energy -13.4138 kcal/mol@LB@Unfolding Energy - mRNA 1.61599 kcal/mol@LB@Unfolding Energy - sRNA 4.09516 kcal/mol@LB@@LB@Position - mRNA 178 -- 185@LB@Position - sRNA 75 -- 82@LB@Position Seed - mRNA 179 -- 185@LB@Position Seed - sRNA 75 -- 81@LB@ |
| 42 |
0.000247 |
0.02703 |
pa4550 |
fimU |
-17.01 |
0.002407 |
39 -- 109 |
35 -- 119 |
type 4 fimbrial biogenesis protein FimU |
pa4549 |
_____________38______________________________________________________________________________________110\n_____________|_______________________________________________________________________________________|\n5'-CCU...UCCGU____C__GC____A__________ACCG_______AA___________A____AUG____ACUU____A_____A____________UCCUG...UCA-3'\n______________ACCG_GA___GCC_____GGGAGA______GGAGA_________CGUG_G_CU___CAGC____CCGG_UGAUC_UG_GACCAGUUG\n______________||||_||___|||_____:|||||______|:|||_________||||_|_||___||||____||||_|||||_:|_|||||||||\n______________UGGC_CU___CGG_____UCCUCU______CUUCU_________GCAC_C_GA___GUCG____GGCC_ACUAG_GC_CUGGUCAAC\n3'-UUU...GUUUU____A__AAU___ACUAC______AUUAGA_____CAGGCUGAC____C_A__GA_____AAU_____G_____A__G_________UCACU...GUU-5'\n_____________|_______________________________________________________________________________________|\n_____________120_____________________________________________________________________________________34\n |
103 -- 109 |
35 -- 41 |
-60.4739 kcal/mol |
20.069 kcal/mol |
23.4074 kcal/mol |
38 110@LB@ | |@LB@5'-CCU...UCCGU C GC A ACCG AA A AUG ACUU A A UCCUG...UCA-3'@LB@ ACCG GA GCC GGGAGA GGAGA CGUG G CU CAGC CCGG UGAUC UG GACCAGUUG@LB@ |||| || ||| :||||| |:||| |||| | || |||| |||| ||||| :| |||||||||@LB@ UGGC CU CGG UCCUCU CUUCU GCAC C GA GUCG GGCC ACUAG GC CUGGUCAAC@LB@3'-UUU...GUUUU A AAU ACUAC AUUAGA CAGGCUGAC C A GA AAU G A G UCACU...GUU-5'@LB@ | |@LB@ 120 34@LB@@LB@@LB@Energy -17.01 kcal/mol@LB@Hybridization Energy -60.4739 kcal/mol@LB@Unfolding Energy - mRNA 20.069 kcal/mol@LB@Unfolding Energy - sRNA 23.4074 kcal/mol@LB@@LB@Position - mRNA 39 -- 109@LB@Position - sRNA 35 -- 119@LB@Position Seed - mRNA 103 -- 109@LB@Position Seed - sRNA 35 -- 41@LB@ |
| 9 |
1.098e-05 |
0.004211 |
pa0119 |
N/A |
-18.72 |
0.000584 |
256 -- 296 |
78 -- 118 |
C4-dicarboxylate transporter DctA |
pa5479 pa1183 |
_____________255________________________________________297\n_____________|__________________________________________|\n5'-GCC...GCAAG__________________UA__C________C__________AUUC-3'\n______________UCGUGAUUGGCCUGGUGA__GG_GUGAUCUG_GGGGU_CGGC\n______________:|||||||:|||||:|||__:|_:|:|||||_:|:||_||:|\n______________GGCACUAAUCGGACUACU__UC_UAUUAGAC_UCUCA_GCUG\n3'-UUU...UUUUU__________________CC___________U_____G____ACGCA...GUU-5'\n_____________|__________________________________________|\n_____________119________________________________________77\n |
267 -- 273 |
101 -- 107 |
-51.6638 kcal/mol |
20.8263 kcal/mol |
12.1236 kcal/mol |
255 297@LB@ | |@LB@5'-GCC...GCAAG UA C C AUUC-3'@LB@ UCGUGAUUGGCCUGGUGA GG GUGAUCUG GGGGU CGGC@LB@ :|||||||:|||||:||| :| :|:||||| :|:|| ||:|@LB@ GGCACUAAUCGGACUACU UC UAUUAGAC UCUCA GCUG@LB@3'-UUU...UUUUU CC U G ACGCA...GUU-5'@LB@ | |@LB@ 119 77@LB@@LB@@LB@Energy -18.72 kcal/mol@LB@Hybridization Energy -51.6638 kcal/mol@LB@Unfolding Energy - mRNA 20.8263 kcal/mol@LB@Unfolding Energy - sRNA 12.1236 kcal/mol@LB@@LB@Position - mRNA 256 -- 296@LB@Position - sRNA 78 -- 118@LB@Position Seed - mRNA 267 -- 273@LB@Position Seed - sRNA 101 -- 107@LB@ |
| 1 |
0 |
0 |
pa3775 |
N/A |
-6.65 |
0.627514 |
32 -- 38 |
50 -- 56 |
'Product name confidence: class 4 (Homologs of previously reported genes of unknown function or no similarity to any previously reported sequences)' |
|
_____________31______39\n_____________|_______|\n5'-CGA...CGGCA_______AGCCG...UGU-3'\n______________CGGCUGA\n______________|||||||\n______________GCCGACU\n3'-UUU...GAAUG_______AGAGC...GUU-5'\n_____________|_______|\n_____________57______49\n |
32 -- 38 |
50 -- 56 |
-12.177 kcal/mol |
0.20262 kcal/mol |
5.33178 kcal/mol |
31 39@LB@ | |@LB@5'-CGA...CGGCA AGCCG...UGU-3'@LB@ CGGCUGA@LB@ |||||||@LB@ GCCGACU@LB@3'-UUU...GAAUG AGAGC...GUU-5'@LB@ | |@LB@ 57 49@LB@@LB@@LB@Energy -6.65 kcal/mol@LB@Hybridization Energy -12.177 kcal/mol@LB@Unfolding Energy - mRNA 0.20262 kcal/mol@LB@Unfolding Energy - sRNA 5.33178 kcal/mol@LB@@LB@Position - mRNA 32 -- 38@LB@Position - sRNA 50 -- 56@LB@Position Seed - mRNA 32 -- 38@LB@Position Seed - sRNA 50 -- 56@LB@ |
| 2 |
9.847e-10 |
2.263e-06 |
pa5490 |
cc4 |
-23.49 |
0.000003 |
181 -- 254 |
56 -- 120 |
cytochrome C4 |
|
_____________180___________________________________________________________________________255\n_____________|_____________________________________________________________________________|\n5'-ACC...CCCUU______AAUUG______________ACAAACU____CGU___________U__ACCC_______GAC___C______CAUGC...UAU-3'\n______________AGCCGU_____GAUUAG_CUGAUGA________UCU___GAGUCUG_CUG_UG____UGGGUCU___CGG_CUUGCC\n______________|:||||_____||||||_|||||||________|||___|||||:|_|||_:|____|||||||___|:|_|||:||\n______________UUGGCA_____CUAAUC_GACUACU________AGA___CUCAGGC_GAC_GC____ACCCAGA___GUC_GAAUGG\n3'-UUU...AGUUU_________________G_______CCUCUAUU___CUU_______U_________________GA___________CCGAC...GUU-5'\n_____________|_____________________________________________________________________________|\n_____________121___________________________________________________________________________55\n |
235 -- 241 |
67 -- 73 |
-59.1342 kcal/mol |
19.5582 kcal/mol |
16.0942 kcal/mol |
180 255@LB@ | |@LB@5'-ACC...CCCUU AAUUG ACAAACU CGU U ACCC GAC C CAUGC...UAU-3'@LB@ AGCCGU GAUUAG CUGAUGA UCU GAGUCUG CUG UG UGGGUCU CGG CUUGCC@LB@ |:|||| |||||| ||||||| ||| |||||:| ||| :| ||||||| |:| |||:||@LB@ UUGGCA CUAAUC GACUACU AGA CUCAGGC GAC GC ACCCAGA GUC GAAUGG@LB@3'-UUU...AGUUU G CCUCUAUU CUU U GA CCGAC...GUU-5'@LB@ | |@LB@ 121 55@LB@@LB@@LB@Energy -23.49 kcal/mol@LB@Hybridization Energy -59.1342 kcal/mol@LB@Unfolding Energy - mRNA 19.5582 kcal/mol@LB@Unfolding Energy - sRNA 16.0942 kcal/mol@LB@@LB@Position - mRNA 181 -- 254@LB@Position - sRNA 56 -- 120@LB@Position Seed - mRNA 235 -- 241@LB@Position Seed - sRNA 67 -- 73@LB@ |
