14 |
1.283e-05 |
0.004211 |
pa2953 |
N/A |
-15.00 |
0.010274 |
173 -- 195 |
95 -- 119 |
electron transfer flavoprotein-ubiquinone oxidoreductase |
|
_____________172________________________196\n_____________|__________________________|\n5'-CGG...CAGAU_____________U___GU_______CGAUA...CCG-3'\n______________ACCGUGA___GCC_UGA__AGGAGAU\n______________|||||||___|||_|||__|||||||\n______________UGGCACU___CGG_ACU__UCCUCUA\n3'-UUU...GUUUU_______AAU_______AC_______UUAGA...GUU-5'\n_____________|__________________________|\n_____________120________________________94\n |
189 -- 195 |
95 -- 101 |
-27.294 kcal/mol |
6.46266 kcal/mol |
5.83995 kcal/mol |
172 196@LB@ | |@LB@5'-CGG...CAGAU U GU CGAUA...CCG-3'@LB@ ACCGUGA GCC UGA AGGAGAU@LB@ ||||||| ||| ||| |||||||@LB@ UGGCACU CGG ACU UCCUCUA@LB@3'-UUU...GUUUU AAU AC UUAGA...GUU-5'@LB@ | |@LB@ 120 94@LB@@LB@@LB@Energy -15.00 kcal/mol@LB@Hybridization Energy -27.294 kcal/mol@LB@Unfolding Energy - mRNA 6.46266 kcal/mol@LB@Unfolding Energy - sRNA 5.83995 kcal/mol@LB@@LB@Position - mRNA 173 -- 195@LB@Position - sRNA 95 -- 119@LB@Position Seed - mRNA 189 -- 195@LB@Position Seed - sRNA 95 -- 101@LB@ |
15 |
2.583e-05 |
0.007914 |
pa3049 |
rmf |
-22.33 |
0.000014 |
230 -- 282 |
40 -- 88 |
ribosome modulation factor |
|
_____________229____________________________________________________283\n_____________|______________________________________________________|\n5'-CGA...UUGGA________UU_U_______UUA__AGAA____AUA______AA___________UUUGU...AUC-3'\n______________AAGAG_CC__C_UGCGUGG___UC____CGGC___ACCGGU__AUCUCGUGAUC\n______________|||||_||__|_|||||||___||____|:||___|||||:__||||||:||:|\n______________UUCUC_GG__G_ACGCACC___AG____GUCG___UGGCCG__UAGAGCGCUGG\n3'-UUU...UAGAC_____A__CU_________CAG__A_______AA_______AC___________UCAAC...GUU-5'\n_____________|______________________________________________________|\n_____________89_____________________________________________________39\n |
276 -- 282 |
40 -- 46 |
-52.7199 kcal/mol |
11.3783 kcal/mol |
19.0139 kcal/mol |
229 283@LB@ | |@LB@5'-CGA...UUGGA UU U UUA AGAA AUA AA UUUGU...AUC-3'@LB@ AAGAG CC C UGCGUGG UC CGGC ACCGGU AUCUCGUGAUC@LB@ ||||| || | ||||||| || |:|| |||||: ||||||:||:|@LB@ UUCUC GG G ACGCACC AG GUCG UGGCCG UAGAGCGCUGG@LB@3'-UUU...UAGAC A CU CAG A AA AC UCAAC...GUU-5'@LB@ | |@LB@ 89 39@LB@@LB@@LB@Energy -22.33 kcal/mol@LB@Hybridization Energy -52.7199 kcal/mol@LB@Unfolding Energy - mRNA 11.3783 kcal/mol@LB@Unfolding Energy - sRNA 19.0139 kcal/mol@LB@@LB@Position - mRNA 230 -- 282@LB@Position - sRNA 40 -- 88@LB@Position Seed - mRNA 276 -- 282@LB@Position Seed - sRNA 40 -- 46@LB@ |
16 |
3.003e-05 |
0.008352 |
pa2689 |
N/A |
-17.00 |
0.002414 |
189 -- 205 |
100 -- 117 |
'Product name confidence: class 4 (Homologs of previously reported genes of unknown function or no similarity to any previously reported sequences)' |
|
_____________188________________206\n_____________|__________________|\n5'-CGG...CAUAA__A__A____________AACCU...UGG-3'\n______________CG_GA__AGCCUGAUGAG\n______________||_||__|||||||||||\n______________GC_CU__UCGGACUACUC\n3'-UUU...UUUUG__A__AA___________CUCUA...GUU-5'\n_____________|__________________|\n_____________118________________99\n |
199 -- 205 |
100 -- 106 |
-22.2469 kcal/mol |
3.0121 kcal/mol |
2.23711 kcal/mol |
188 206@LB@ | |@LB@5'-CGG...CAUAA A A AACCU...UGG-3'@LB@ CG GA AGCCUGAUGAG@LB@ || || |||||||||||@LB@ GC CU UCGGACUACUC@LB@3'-UUU...UUUUG A AA CUCUA...GUU-5'@LB@ | |@LB@ 118 99@LB@@LB@@LB@Energy -17.00 kcal/mol@LB@Hybridization Energy -22.2469 kcal/mol@LB@Unfolding Energy - mRNA 3.0121 kcal/mol@LB@Unfolding Energy - sRNA 2.23711 kcal/mol@LB@@LB@Position - mRNA 189 -- 205@LB@Position - sRNA 100 -- 117@LB@Position Seed - mRNA 199 -- 205@LB@Position Seed - sRNA 100 -- 106@LB@ |
17 |
3.089e-05 |
0.008352 |
pa5396 |
N/A |
-7.92 |
0.424136 |
180 -- 186 |
104 -- 110 |
'Product name confidence: class 4 (Homologs of previously reported genes of unknown function or no similarity to any previously reported sequences)' |
|
_____________179_____187\n_____________|_______|\n5'-CGC...CGCCC_______AAGGG...GCC-3'\n______________AGCCUGA\n______________|||||||\n______________UCGGACU\n3'-UUU...ACUAA_______ACUCC...GUU-5'\n_____________|_______|\n_____________111_____103\n |
180 -- 186 |
104 -- 110 |
-11.2317 kcal/mol |
1.21017 kcal/mol |
2.10482 kcal/mol |
179 187@LB@ | |@LB@5'-CGC...CGCCC AAGGG...GCC-3'@LB@ AGCCUGA@LB@ |||||||@LB@ UCGGACU@LB@3'-UUU...ACUAA ACUCC...GUU-5'@LB@ | |@LB@ 111 103@LB@@LB@@LB@Energy -7.92 kcal/mol@LB@Hybridization Energy -11.2317 kcal/mol@LB@Unfolding Energy - mRNA 1.21017 kcal/mol@LB@Unfolding Energy - sRNA 2.10482 kcal/mol@LB@@LB@Position - mRNA 180 -- 186@LB@Position - sRNA 104 -- 110@LB@Position Seed - mRNA 180 -- 186@LB@Position Seed - sRNA 104 -- 110@LB@ |
18 |
3.753e-05 |
0.009449 |
pa5036 |
gltB |
-9.24 |
0.251750 |
240 -- 259 |
103 -- 120 |
glutamate synthase subunit alpha |
|
_____________239__________________260\n_____________|____________________|\n5'-GAA...AGGAU_____CG__U__________CGCCC...AAA-3'\n______________AACUG__GA_UUGGCCUGAU\n______________|||:|__||_||:|||||||\n______________UUGGC__CU_AAUCGGACUA\n3'-UUU...AGUUU_____A______________CUCCU...GUU-5'\n_____________|____________________|\n_____________121__________________102\n |
253 -- 259 |
103 -- 109 |
-18.8705 kcal/mol |
7.38825 kcal/mol |
2.24268 kcal/mol |
239 260@LB@ | |@LB@5'-GAA...AGGAU CG U CGCCC...AAA-3'@LB@ AACUG GA UUGGCCUGAU@LB@ |||:| || ||:|||||||@LB@ UUGGC CU AAUCGGACUA@LB@3'-UUU...AGUUU A CUCCU...GUU-5'@LB@ | |@LB@ 121 102@LB@@LB@@LB@Energy -9.24 kcal/mol@LB@Hybridization Energy -18.8705 kcal/mol@LB@Unfolding Energy - mRNA 7.38825 kcal/mol@LB@Unfolding Energy - sRNA 2.24268 kcal/mol@LB@@LB@Position - mRNA 240 -- 259@LB@Position - sRNA 103 -- 120@LB@Position Seed - mRNA 253 -- 259@LB@Position Seed - sRNA 103 -- 109@LB@ |
19 |
3.906e-05 |
0.009449 |
pa0443 |
N/A |
-14.62 |
0.013168 |
152 -- 204 |
75 -- 119 |
transporter |
|
_____________151______________________________________________________205\n_____________|________________________________________________________|\n5'-UUG...CGGCC____C________C______C_______CUAAAAGAAU_________G__CA____AACAG...UCG-3'\n______________AUCG__AUUAGCC_GAUGAG_GA_AUAA__________UCUGGAGAG_CC___UGC\n______________|:||__|||||||_||||||_||_||||__________||||:||||_||___|||\n______________UGGC__UAAUCGG_CUACUC_CU_UAUU__________AGACUUCUC_GG___ACG\n3'-UUU...GUUUU____AC_______A_________C_______________________A__CUG___CACCC...GUU-5'\n_____________|________________________________________________________|\n_____________120______________________________________________________74\n |
190 -- 196 |
84 -- 90 |
-39.3471 kcal/mol |
12.5408 kcal/mol |
12.1884 kcal/mol |
151 205@LB@ | |@LB@5'-UUG...CGGCC C C C CUAAAAGAAU G CA AACAG...UCG-3'@LB@ AUCG AUUAGCC GAUGAG GA AUAA UCUGGAGAG CC UGC@LB@ |:|| ||||||| |||||| || |||| ||||:|||| || |||@LB@ UGGC UAAUCGG CUACUC CU UAUU AGACUUCUC GG ACG@LB@3'-UUU...GUUUU AC A C A CUG CACCC...GUU-5'@LB@ | |@LB@ 120 74@LB@@LB@@LB@Energy -14.62 kcal/mol@LB@Hybridization Energy -39.3471 kcal/mol@LB@Unfolding Energy - mRNA 12.5408 kcal/mol@LB@Unfolding Energy - sRNA 12.1884 kcal/mol@LB@@LB@Position - mRNA 152 -- 204@LB@Position - sRNA 75 -- 119@LB@Position Seed - mRNA 190 -- 196@LB@Position Seed - sRNA 84 -- 90@LB@ |
21 |
5.061e-05 |
0.01105 |
pa1778 |
cobA |
-17.87 |
0.001208 |
184 -- 227 |
69 -- 109 |
uroporphyrin-III C-methyltransferase |
|
_____________183____________________________________________228\n_____________|______________________________________________|\n5'-GGU...CGAAU______G___AAC__C_____GCG_U____________________GCGGG...UGG-3'\n______________GCCUGA_GAG___GA_GAUGA___G_AAG_GUCUGGCUG_GUGGGU\n______________||||||_|||___||_|||:|___|_|||_|||:|:|||_||||||\n______________CGGACU_CUC___CU_CUAUU___C_UUC_CAGGCUGAC_CACCCA\n3'-UUU...CUAAU______A______________AGA_____U_________G______GAGAG...GUU-5'\n_____________|______________________________________________|\n_____________110____________________________________________68\n |
215 -- 221 |
76 -- 82 |
-46.3721 kcal/mol |
15.5624 kcal/mol |
12.9463 kcal/mol |
183 228@LB@ | |@LB@5'-GGU...CGAAU G AAC C GCG U GCGGG...UGG-3'@LB@ GCCUGA GAG GA GAUGA G AAG GUCUGGCUG GUGGGU@LB@ |||||| ||| || |||:| | ||| |||:|:||| ||||||@LB@ CGGACU CUC CU CUAUU C UUC CAGGCUGAC CACCCA@LB@3'-UUU...CUAAU A AGA U G GAGAG...GUU-5'@LB@ | |@LB@ 110 68@LB@@LB@@LB@Energy -17.87 kcal/mol@LB@Hybridization Energy -46.3721 kcal/mol@LB@Unfolding Energy - mRNA 15.5624 kcal/mol@LB@Unfolding Energy - sRNA 12.9463 kcal/mol@LB@@LB@Position - mRNA 184 -- 227@LB@Position - sRNA 69 -- 109@LB@Position Seed - mRNA 215 -- 221@LB@Position Seed - sRNA 76 -- 82@LB@ |
22 |
5.562e-05 |
0.01105 |
pa2264 |
N/A |
-16.58 |
0.003334 |
170 -- 193 |
98 -- 122 |
'Product name confidence: class 4 (Homologs of previously reported genes of unknown function or no similarity to any previously reported sequences)' |
|
_____________169_______________________194\n_____________|_________________________|\n5'-CCU...AAGAC___________GAU__A________CCCCA...AUG-3'\n______________GAAACCGUGAU___CC_GA_GAGGA\n______________:||||||||||___||_||_|||||\n______________UUUUGGCACUA___GG_CU_CUCCU\n3'-UUU...CCAGU___________AUC__A__A_____CUAUU...GUU-5'\n_____________|_________________________|\n_____________123_______________________97\n |
174 -- 180 |
112 -- 118 |
-25.8581 kcal/mol |
7.03089 kcal/mol |
2.25226 kcal/mol |
169 194@LB@ | |@LB@5'-CCU...AAGAC GAU A CCCCA...AUG-3'@LB@ GAAACCGUGAU CC GA GAGGA@LB@ :|||||||||| || || |||||@LB@ UUUUGGCACUA GG CU CUCCU@LB@3'-UUU...CCAGU AUC A A CUAUU...GUU-5'@LB@ | |@LB@ 123 97@LB@@LB@@LB@Energy -16.58 kcal/mol@LB@Hybridization Energy -25.8581 kcal/mol@LB@Unfolding Energy - mRNA 7.03089 kcal/mol@LB@Unfolding Energy - sRNA 2.25226 kcal/mol@LB@@LB@Position - mRNA 170 -- 193@LB@Position - sRNA 98 -- 122@LB@Position Seed - mRNA 174 -- 180@LB@Position Seed - sRNA 112 -- 118@LB@ |
23 |
5.711e-05 |
0.01105 |
pa2967 |
fabG |
-15.49 |
0.007349 |
171 -- 236 |
53 -- 111 |
3-oxoacyl-[acyl-carrier-protein] reductase FabG |
|
_____________170__________________________________________________________________237\n_____________|____________________________________________________________________|\n5'-CCC...CGCCC________GAGAGAGAA______G____CCAU_________AAG__AA____GCA_____A_______GCCAG...UCG-3'\n______________UGGCCUGA_________AGGAGA_AAUC____GAGUCUG_C___GU__GGUC___UUGGU__ACCGGC\n______________|:||||||_________||||||_||||____|||||:|_|___||__||||___|::|:__||||||\n______________AUCGGACU_________UCCUCU_UUAG____CUCAGGC_G___CA__CCAG___AGUCG__UGGCCG\n3'-UUU...CACUA________AC_____________A____ACUU_______U_ACG__C_____AG______AA______ACUAG...GUU-5'\n_____________|____________________________________________________________________|\n_____________112__________________________________________________________________52\n |
203 -- 209 |
80 -- 86 |
-53.5207 kcal/mol |
19.3634 kcal/mol |
18.6748 kcal/mol |
170 237@LB@ | |@LB@5'-CCC...CGCCC GAGAGAGAA G CCAU AAG AA GCA A GCCAG...UCG-3'@LB@ UGGCCUGA AGGAGA AAUC GAGUCUG C GU GGUC UUGGU ACCGGC@LB@ |:|||||| |||||| |||| |||||:| | || |||| |::|: ||||||@LB@ AUCGGACU UCCUCU UUAG CUCAGGC G CA CCAG AGUCG UGGCCG@LB@3'-UUU...CACUA AC A ACUU U ACG C AG AA ACUAG...GUU-5'@LB@ | |@LB@ 112 52@LB@@LB@@LB@Energy -15.49 kcal/mol@LB@Hybridization Energy -53.5207 kcal/mol@LB@Unfolding Energy - mRNA 19.3634 kcal/mol@LB@Unfolding Energy - sRNA 18.6748 kcal/mol@LB@@LB@Position - mRNA 171 -- 236@LB@Position - sRNA 53 -- 111@LB@Position Seed - mRNA 203 -- 209@LB@Position Seed - sRNA 80 -- 86@LB@ |
24 |
5.771e-05 |
0.01105 |
pa5035 |
gltD |
-10.90 |
0.115442 |
181 -- 216 |
79 -- 110 |
glutamate synthase subunit beta |
|
_____________180___________________________________217\n_____________|_____________________________________|\n5'-UCG...CCCGA___UG________UUUC____U_______C_______AUUCC...AGC-3'\n______________AGU__UGAUGAGG____GAUA_GUCUGAA__GUCUGA\n______________||:__||||||||____||||_:||||||__|||:||\n______________UCG__ACUACUCC____CUAU_UAGACUU__CAGGCU\n3'-UUU...ACUAA___G_________U_______________CU______GACGC...GUU-5'\n_____________|_____________________________________|\n_____________111___________________________________78\n |
203 -- 209 |
87 -- 93 |
-30.6009 kcal/mol |
8.30781 kcal/mol |
11.3934 kcal/mol |
180 217@LB@ | |@LB@5'-UCG...CCCGA UG UUUC U C AUUCC...AGC-3'@LB@ AGU UGAUGAGG GAUA GUCUGAA GUCUGA@LB@ ||: |||||||| |||| :|||||| |||:||@LB@ UCG ACUACUCC CUAU UAGACUU CAGGCU@LB@3'-UUU...ACUAA G U CU GACGC...GUU-5'@LB@ | |@LB@ 111 78@LB@@LB@@LB@Energy -10.90 kcal/mol@LB@Hybridization Energy -30.6009 kcal/mol@LB@Unfolding Energy - mRNA 8.30781 kcal/mol@LB@Unfolding Energy - sRNA 11.3934 kcal/mol@LB@@LB@Position - mRNA 181 -- 216@LB@Position - sRNA 79 -- 110@LB@Position Seed - mRNA 203 -- 209@LB@Position Seed - sRNA 87 -- 93@LB@ |