133 |
0.002661 |
0.0912 |
pa2511 |
N/A |
-14.22 |
0.017134 |
181 -- 210 |
98 -- 119 |
transcriptional regulator |
|
_____________180____________________________211\n_____________|______________________________|\n5'-CGG...GCCUU______UCGAGU___GAACCA_________CCCAU...CGC-3'\n______________GCCGUG______GCC______UGAUGAGGA\n______________:|||||______|||______|||||||||\n______________UGGCAC______CGG______ACUACUCCU\n3'-UUU...GUUUU______UAAU____________________CUAUU...GUU-5'\n_____________|______________________________|\n_____________120____________________________97\n |
204 -- 210 |
98 -- 104 |
-24.6889 kcal/mol |
8.22136 kcal/mol |
2.25153 kcal/mol |
180 211@LB@ | |@LB@5'-CGG...GCCUU UCGAGU GAACCA CCCAU...CGC-3'@LB@ GCCGUG GCC UGAUGAGGA@LB@ :||||| ||| |||||||||@LB@ UGGCAC CGG ACUACUCCU@LB@3'-UUU...GUUUU UAAU CUAUU...GUU-5'@LB@ | |@LB@ 120 97@LB@@LB@@LB@Energy -14.22 kcal/mol@LB@Hybridization Energy -24.6889 kcal/mol@LB@Unfolding Energy - mRNA 8.22136 kcal/mol@LB@Unfolding Energy - sRNA 2.25153 kcal/mol@LB@@LB@Position - mRNA 181 -- 210@LB@Position - sRNA 98 -- 119@LB@Position Seed - mRNA 204 -- 210@LB@Position Seed - sRNA 98 -- 104@LB@ |
134 |
0.002678 |
0.0912 |
pa1421 |
gbuA |
-12.45 |
0.050008 |
184 -- 195 |
107 -- 120 |
guanidinobutyrase |
|
_____________183____________196\n_____________|______________|\n5'-UCC...ACAAC______________ACCCC...CCG-3'\n______________GACCGUGA__GGCC\n______________:|||||||__:|||\n______________UUGGCACU__UCGG\n3'-UUU...AGUUU________AA____ACUAC...GUU-5'\n_____________|______________|\n_____________121____________106\n |
185 -- 191 |
113 -- 119 |
-18.3112 kcal/mol |
3.63401 kcal/mol |
2.2351 kcal/mol |
183 196@LB@ | |@LB@5'-UCC...ACAAC ACCCC...CCG-3'@LB@ GACCGUGA GGCC@LB@ :||||||| :|||@LB@ UUGGCACU UCGG@LB@3'-UUU...AGUUU AA ACUAC...GUU-5'@LB@ | |@LB@ 121 106@LB@@LB@@LB@Energy -12.45 kcal/mol@LB@Hybridization Energy -18.3112 kcal/mol@LB@Unfolding Energy - mRNA 3.63401 kcal/mol@LB@Unfolding Energy - sRNA 2.2351 kcal/mol@LB@@LB@Position - mRNA 184 -- 195@LB@Position - sRNA 107 -- 120@LB@Position Seed - mRNA 185 -- 191@LB@Position Seed - sRNA 113 -- 119@LB@ |
135 |
0.002679 |
0.0912 |
pa0035 |
trpA |
-9.18 |
0.258333 |
240 -- 261 |
101 -- 123 |
tryptophan synthase subunit alpha |
|
_____________239_____________________262\n_____________|_______________________|\n5'-GAC...AGCAG________C_CCGC_________CCUUC...CCC-3'\n______________GAAAACCG_G_____CCUGGUGA\n______________:|||||||_|_____||||:|||\n______________UUUUUGGC_C_____GGACUACU\n3'-UUU...CCCAG________A_UAAUC________CCUCU...GUU-5'\n_____________|_______________________|\n_____________124_____________________100\n |
255 -- 261 |
101 -- 107 |
-19.6747 kcal/mol |
8.2509 kcal/mol |
2.24445 kcal/mol |
239 262@LB@ | |@LB@5'-GAC...AGCAG C CCGC CCUUC...CCC-3'@LB@ GAAAACCG G CCUGGUGA@LB@ :||||||| | ||||:|||@LB@ UUUUUGGC C GGACUACU@LB@3'-UUU...CCCAG A UAAUC CCUCU...GUU-5'@LB@ | |@LB@ 124 100@LB@@LB@@LB@Energy -9.18 kcal/mol@LB@Hybridization Energy -19.6747 kcal/mol@LB@Unfolding Energy - mRNA 8.2509 kcal/mol@LB@Unfolding Energy - sRNA 2.24445 kcal/mol@LB@@LB@Position - mRNA 240 -- 261@LB@Position - sRNA 101 -- 123@LB@Position Seed - mRNA 255 -- 261@LB@Position Seed - sRNA 101 -- 107@LB@ |
138 |
0.002776 |
0.09245 |
pa0440 |
N/A |
-11.93 |
0.067049 |
197 -- 216 |
104 -- 120 |
oxidoreductase |
|
_____________196__________________217\n_____________|____________________|\n5'-CGA...GCUAC_________CGAUUC_____ACCAC...AGG-3'\n______________AACCGUGAU______CCUGA\n______________|||||||||______|||||\n______________UUGGCACUA______GGACU\n3'-UUU...AGUUU_________AUC________ACUCC...GUU-5'\n_____________|____________________|\n_____________121__________________103\n |
199 -- 205 |
112 -- 118 |
-17.8806 kcal/mol |
3.71535 kcal/mol |
2.24182 kcal/mol |
196 217@LB@ | |@LB@5'-CGA...GCUAC CGAUUC ACCAC...AGG-3'@LB@ AACCGUGAU CCUGA@LB@ ||||||||| |||||@LB@ UUGGCACUA GGACU@LB@3'-UUU...AGUUU AUC ACUCC...GUU-5'@LB@ | |@LB@ 121 103@LB@@LB@@LB@Energy -11.93 kcal/mol@LB@Hybridization Energy -17.8806 kcal/mol@LB@Unfolding Energy - mRNA 3.71535 kcal/mol@LB@Unfolding Energy - sRNA 2.24182 kcal/mol@LB@@LB@Position - mRNA 197 -- 216@LB@Position - sRNA 104 -- 120@LB@Position Seed - mRNA 199 -- 205@LB@Position Seed - sRNA 112 -- 118@LB@ |
139 |
0.002816 |
0.0931 |
pa1173 |
napB |
-8.92 |
0.288683 |
179 -- 194 |
100 -- 120 |
cytochrome C protein NapB |
|
_____________178___________________195\n_____________|_____________________|\n5'-GCG...UGCUC_________________G___CGCGC...ACG-3'\n______________AACC_____UGGCCUGA_GAG\n______________||||_____|:||||||_|||\n______________UUGG_____AUCGGACU_CUC\n3'-UUU...AGUUU____CACUA________A___CUCUA...GUU-5'\n_____________|_____________________|\n_____________121___________________99\n |
184 -- 190 |
104 -- 110 |
-18.0021 kcal/mol |
6.83795 kcal/mol |
2.24919 kcal/mol |
178 195@LB@ | |@LB@5'-GCG...UGCUC G CGCGC...ACG-3'@LB@ AACC UGGCCUGA GAG@LB@ |||| |:|||||| |||@LB@ UUGG AUCGGACU CUC@LB@3'-UUU...AGUUU CACUA A CUCUA...GUU-5'@LB@ | |@LB@ 121 99@LB@@LB@@LB@Energy -8.92 kcal/mol@LB@Hybridization Energy -18.0021 kcal/mol@LB@Unfolding Energy - mRNA 6.83795 kcal/mol@LB@Unfolding Energy - sRNA 2.24919 kcal/mol@LB@@LB@Position - mRNA 179 -- 194@LB@Position - sRNA 100 -- 120@LB@Position Seed - mRNA 184 -- 190@LB@Position Seed - sRNA 104 -- 110@LB@ |
140 |
0.002911 |
0.09555 |
pa4656 |
N/A |
-13.59 |
0.025440 |
215 -- 238 |
100 -- 120 |
'Product name confidence: class 4 (Homologs of previously reported genes of unknown function or no similarity to any previously reported sequences)' |
|
_____________214______________________239\n_____________|________________________|\n5'-GCC...CUCUU_____GC___ACC___________UCGCC...GGC-3'\n______________GACCG__GGU___GGCCUGAUGGG\n______________:||||__|:|___:||||||||:|\n______________UUGGC__CUA___UCGGACUACUC\n3'-UUU...AGUUU_____A____A_____________CUCUA...GUU-5'\n_____________|________________________|\n_____________121______________________99\n |
232 -- 238 |
100 -- 106 |
-25.6163 kcal/mol |
9.78003 kcal/mol |
2.24919 kcal/mol |
214 239@LB@ | |@LB@5'-GCC...CUCUU GC ACC UCGCC...GGC-3'@LB@ GACCG GGU GGCCUGAUGGG@LB@ :|||| |:| :||||||||:|@LB@ UUGGC CUA UCGGACUACUC@LB@3'-UUU...AGUUU A A CUCUA...GUU-5'@LB@ | |@LB@ 121 99@LB@@LB@@LB@Energy -13.59 kcal/mol@LB@Hybridization Energy -25.6163 kcal/mol@LB@Unfolding Energy - mRNA 9.78003 kcal/mol@LB@Unfolding Energy - sRNA 2.24919 kcal/mol@LB@@LB@Position - mRNA 215 -- 238@LB@Position - sRNA 100 -- 120@LB@Position Seed - mRNA 232 -- 238@LB@Position Seed - sRNA 100 -- 106@LB@ |
142 |
0.003054 |
0.09883 |
pa4939 |
N/A |
-10.79 |
0.122172 |
84 -- 99 |
39 -- 58 |
ATP phosphoribosyltransferase |
|
_____________83___________________100\n_____________|____________________|\n5'-CGC...CAUCG____________________UCACC...AUC-3'\n______________GCCGGCUGA____GCGACCG\n______________:||||||||____||||||:\n______________UGGCCGACU____CGCUGGU\n3'-UUU...UCGAA_________AGAG_______CAACU...GUU-5'\n_____________|____________________|\n_____________59___________________38\n |
93 -- 99 |
39 -- 45 |
-28.5021 kcal/mol |
6.65531 kcal/mol |
11.0618 kcal/mol |
83 100@LB@ | |@LB@5'-CGC...CAUCG UCACC...AUC-3'@LB@ GCCGGCUGA GCGACCG@LB@ :|||||||| ||||||:@LB@ UGGCCGACU CGCUGGU@LB@3'-UUU...UCGAA AGAG CAACU...GUU-5'@LB@ | |@LB@ 59 38@LB@@LB@@LB@Energy -10.79 kcal/mol@LB@Hybridization Energy -28.5021 kcal/mol@LB@Unfolding Energy - mRNA 6.65531 kcal/mol@LB@Unfolding Energy - sRNA 11.0618 kcal/mol@LB@@LB@Position - mRNA 84 -- 99@LB@Position - sRNA 39 -- 58@LB@Position Seed - mRNA 93 -- 99@LB@Position Seed - sRNA 39 -- 45@LB@ |
143 |
0.003113 |
0.1001 |
pa1811 |
N/A |
-11.02 |
0.108661 |
233 -- 245 |
105 -- 120 |
solute-binding protein |
|
_____________232______________246\n_____________|________________|\n5'-GAG...GGCCU________________CCCAG...UCA-3'\n______________GGCCGUGA___GCCUG\n______________::||||||___|||||\n______________UUGGCACU___CGGAC\n3'-UUU...AGUUU________AAU_____UACUC...GUU-5'\n_____________|________________|\n_____________121______________104\n |
234 -- 240 |
113 -- 119 |
-18.7383 kcal/mol |
5.48096 kcal/mol |
2.24173 kcal/mol |
232 246@LB@ | |@LB@5'-GAG...GGCCU CCCAG...UCA-3'@LB@ GGCCGUGA GCCUG@LB@ ::|||||| |||||@LB@ UUGGCACU CGGAC@LB@3'-UUU...AGUUU AAU UACUC...GUU-5'@LB@ | |@LB@ 121 104@LB@@LB@@LB@Energy -11.02 kcal/mol@LB@Hybridization Energy -18.7383 kcal/mol@LB@Unfolding Energy - mRNA 5.48096 kcal/mol@LB@Unfolding Energy - sRNA 2.24173 kcal/mol@LB@@LB@Position - mRNA 233 -- 245@LB@Position - sRNA 105 -- 120@LB@Position Seed - mRNA 234 -- 240@LB@Position Seed - sRNA 113 -- 119@LB@ |
144 |
0.003137 |
0.1001 |
pa1516 |
N/A |
-10.35 |
0.151671 |
51 -- 72 |
44 -- 62 |
'Product name confidence: class 4 (Homologs of previously reported genes of unknown function or no similarity to any previously reported sequences)' |
|
_____________50_____________________73\n_____________|______________________|\n5'-GUG...GGCCU__A_____________GG____CCGGC...AGA-3'\n______________GC_UUGCCGGUUGAUC__UCGC\n______________||_||:||||:|||||__||||\n______________CG_AAUGGCCGACUAG__AGCG\n3'-UUU...AGAGU______________________CUGGU...GUU-5'\n_____________|______________________|\n_____________63_____________________43\n |
57 -- 63 |
51 -- 57 |
-28.648 kcal/mol |
8.16614 kcal/mol |
10.1396 kcal/mol |
50 73@LB@ | |@LB@5'-GUG...GGCCU A GG CCGGC...AGA-3'@LB@ GC UUGCCGGUUGAUC UCGC@LB@ || ||:||||:||||| ||||@LB@ CG AAUGGCCGACUAG AGCG@LB@3'-UUU...AGAGU CUGGU...GUU-5'@LB@ | |@LB@ 63 43@LB@@LB@@LB@Energy -10.35 kcal/mol@LB@Hybridization Energy -28.648 kcal/mol@LB@Unfolding Energy - mRNA 8.16614 kcal/mol@LB@Unfolding Energy - sRNA 10.1396 kcal/mol@LB@@LB@Position - mRNA 51 -- 72@LB@Position - sRNA 44 -- 62@LB@Position Seed - mRNA 57 -- 63@LB@Position Seed - sRNA 51 -- 57@LB@ |
146 |
0.003267 |
0.1028 |
pa0918 |
N/A |
-13.83 |
0.021920 |
192 -- 207 |
107 -- 122 |
cytochrome b561 |
|
_____________191______________208\n_____________|________________|\n5'-CCA...GAGAA___________G____GGAAA...AAC-3'\n______________GGAACCGUGAU_AGCU\n______________::|||||||||_|||:\n______________UUUUGGCACUA_UCGG\n3'-UUU...CCAGU___________A____ACUAC...GUU-5'\n_____________|________________|\n_____________123______________106\n |
196 -- 202 |
112 -- 118 |
-20.0543 kcal/mol |
3.98833 kcal/mol |
2.23582 kcal/mol |
191 208@LB@ | |@LB@5'-CCA...GAGAA G GGAAA...AAC-3'@LB@ GGAACCGUGAU AGCU@LB@ ::||||||||| |||:@LB@ UUUUGGCACUA UCGG@LB@3'-UUU...CCAGU A ACUAC...GUU-5'@LB@ | |@LB@ 123 106@LB@@LB@@LB@Energy -13.83 kcal/mol@LB@Hybridization Energy -20.0543 kcal/mol@LB@Unfolding Energy - mRNA 3.98833 kcal/mol@LB@Unfolding Energy - sRNA 2.23582 kcal/mol@LB@@LB@Position - mRNA 192 -- 207@LB@Position - sRNA 107 -- 122@LB@Position Seed - mRNA 196 -- 202@LB@Position Seed - sRNA 112 -- 118@LB@ |