3 |
1.464e-07 |
0.0002243 |
pa3814 |
iscS |
-11.38 |
0.090161 |
182 -- 237 |
39 -- 110 |
cysteine desulfurase |
|
_____________181___________________________________________________________________________238\n_____________|_____________________________________________________________________________|\n5'-CAC...GCGCC______U_______UUAC_____U__AAUUG________________AC____A_______________________CUCCC...UCG-3'\n______________AGCCUG___AGGAG_____CUGA_GA_____CCGA_________UCU__CUCG__UUAC_______UC_CGCGACCA\n______________||||||___|||||_____||||_||_____||||_________|||__|||:__||||_______||_||||||||\n______________UCGGAC___UCCUC_____GACU_CU_____GGCU_________AGA__GAGU__AAUG_______AG_GCGCUGGU\n3'-UUU...ACUAA______UAC_____UAUUA____U__CA_______GACGCACCC_________CG____GCCGACU__A________CAACU...GUU-5'\n_____________|_____________________________________________________________________________|\n_____________111___________________________________________________________________________38\n |
231 -- 237 |
39 -- 45 |
-44.4171 kcal/mol |
9.67698 kcal/mol |
23.3669 kcal/mol |
181 238@LB@ | |@LB@5'-CAC...GCGCC U UUAC U AAUUG AC A CUCCC...UCG-3'@LB@ AGCCUG AGGAG CUGA GA CCGA UCU CUCG UUAC UC CGCGACCA@LB@ |||||| ||||| |||| || |||| ||| |||: |||| || ||||||||@LB@ UCGGAC UCCUC GACU CU GGCU AGA GAGU AAUG AG GCGCUGGU@LB@3'-UUU...ACUAA UAC UAUUA U CA GACGCACCC CG GCCGACU A CAACU...GUU-5'@LB@ | |@LB@ 111 38@LB@@LB@@LB@Energy -11.38 kcal/mol@LB@Hybridization Energy -44.4171 kcal/mol@LB@Unfolding Energy - mRNA 9.67698 kcal/mol@LB@Unfolding Energy - sRNA 23.3669 kcal/mol@LB@@LB@Position - mRNA 182 -- 237@LB@Position - sRNA 39 -- 110@LB@Position Seed - mRNA 231 -- 237@LB@Position Seed - sRNA 39 -- 45@LB@ |
4 |
5.154e-07 |
0.0005922 |
pa1581 |
sdhC |
-15.05 |
0.009907 |
206 -- 221 |
108 -- 123 |
succinate dehydrogenase subunit C |
|
_____________205______________222\n_____________|________________|\n5'-ACG...GUGAA___________A____AAACG...CUG-3'\n______________AAAAGCCGUGA_UAGC\n______________||||:||||||_||||\n______________UUUUUGGCACU_AUCG\n3'-UUU...CCCAG___________A____GACUA...GUU-5'\n_____________|________________|\n_____________124______________107\n |
210 -- 216 |
113 -- 119 |
-19.67 kcal/mol |
2.45872 kcal/mol |
2.16544 kcal/mol |
205 222@LB@ | |@LB@5'-ACG...GUGAA A AAACG...CUG-3'@LB@ AAAAGCCGUGA UAGC@LB@ ||||:|||||| ||||@LB@ UUUUUGGCACU AUCG@LB@3'-UUU...CCCAG A GACUA...GUU-5'@LB@ | |@LB@ 124 107@LB@@LB@@LB@Energy -15.05 kcal/mol@LB@Hybridization Energy -19.67 kcal/mol@LB@Unfolding Energy - mRNA 2.45872 kcal/mol@LB@Unfolding Energy - sRNA 2.16544 kcal/mol@LB@@LB@Position - mRNA 206 -- 221@LB@Position - sRNA 108 -- 123@LB@Position Seed - mRNA 210 -- 216@LB@Position Seed - sRNA 113 -- 119@LB@ |
5 |
7.253e-07 |
0.0006667 |
pa5351 |
rubA1 |
-17.51 |
0.001615 |
172 -- 222 |
71 -- 121 |
rubredoxin |
|
_____________171___________________________________________________223\n_____________|_____________________________________________________|\n5'-CGG...GCGCU__________AAC__GCCC____UAAACAA_______AG_____AA_______UGUGU...UGC-3'\n______________GAACCGUGGU___CC____GAGG________UGAAGA___UGGC__UGCGUGG\n______________:|||||||:|___||____||||________||||||___:|:|__|||||||\n______________UUUGGCACUA___GG____CUCC________ACUUCU___GCUG__ACGCACC\n3'-UUU...CAGUU__________AUC__ACUA____UCUAUUAG______CAG_____________CAGAG...GUU-5'\n_____________|_____________________________________________________|\n_____________122___________________________________________________70\n |
216 -- 222 |
71 -- 77 |
-42.807 kcal/mol |
11.4444 kcal/mol |
13.8582 kcal/mol |
171 223@LB@ | |@LB@5'-CGG...GCGCU AAC GCCC UAAACAA AG AA UGUGU...UGC-3'@LB@ GAACCGUGGU CC GAGG UGAAGA UGGC UGCGUGG@LB@ :|||||||:| || |||| |||||| :|:| |||||||@LB@ UUUGGCACUA GG CUCC ACUUCU GCUG ACGCACC@LB@3'-UUU...CAGUU AUC ACUA UCUAUUAG CAG CAGAG...GUU-5'@LB@ | |@LB@ 122 70@LB@@LB@@LB@Energy -17.51 kcal/mol@LB@Hybridization Energy -42.807 kcal/mol@LB@Unfolding Energy - mRNA 11.4444 kcal/mol@LB@Unfolding Energy - sRNA 13.8582 kcal/mol@LB@@LB@Position - mRNA 172 -- 222@LB@Position - sRNA 71 -- 121@LB@Position Seed - mRNA 216 -- 222@LB@Position Seed - sRNA 71 -- 77@LB@ |
6 |
4.972e-06 |
0.003808 |
pa1336 |
N/A |
-12.31 |
0.054230 |
242 -- 253 |
107 -- 120 |
two-component sensor |
|
_____________241____________254\n_____________|______________|\n5'-GUC...UCACU______________CCGCC...UGA-3'\n______________GACCGUGA__AGCC\n______________:|||||||__||||\n______________UUGGCACU__UCGG\n3'-UUU...AGUUU________AA____ACUAC...GUU-5'\n_____________|______________|\n_____________121____________106\n |
243 -- 249 |
113 -- 119 |
-17.7907 kcal/mol |
3.25304 kcal/mol |
2.2351 kcal/mol |
241 254@LB@ | |@LB@5'-GUC...UCACU CCGCC...UGA-3'@LB@ GACCGUGA AGCC@LB@ :||||||| ||||@LB@ UUGGCACU UCGG@LB@3'-UUU...AGUUU AA ACUAC...GUU-5'@LB@ | |@LB@ 121 106@LB@@LB@@LB@Energy -12.31 kcal/mol@LB@Hybridization Energy -17.7907 kcal/mol@LB@Unfolding Energy - mRNA 3.25304 kcal/mol@LB@Unfolding Energy - sRNA 2.2351 kcal/mol@LB@@LB@Position - mRNA 242 -- 253@LB@Position - sRNA 107 -- 120@LB@Position Seed - mRNA 243 -- 249@LB@Position Seed - sRNA 113 -- 119@LB@ |
7 |
9.272e-06 |
0.004211 |
pa1571 |
N/A |
-18.24 |
0.000884 |
168 -- 194 |
96 -- 121 |
'Product name confidence: class 4 (Homologs of previously reported genes of unknown function or no similarity to any previously reported sequences)' |
|
_____________167_________________________195\n_____________|___________________________|\n5'-CGG...UCCCU______CC___AAA_____________CGGGC...AGA-3'\n______________AGACUG__GAU___CCUGAUGAGGAGA\n______________|:||:|__|||___|||||||||||||\n______________UUUGGC__CUA___GGACUACUCCUCU\n3'-UUU...CAGUU______A____AUC_____________AUUAG...GUU-5'\n_____________|___________________________|\n_____________122_________________________95\n |
188 -- 194 |
96 -- 102 |
-30.1565 kcal/mol |
6.37386 kcal/mol |
5.54718 kcal/mol |
167 195@LB@ | |@LB@5'-CGG...UCCCU CC AAA CGGGC...AGA-3'@LB@ AGACUG GAU CCUGAUGAGGAGA@LB@ |:||:| ||| |||||||||||||@LB@ UUUGGC CUA GGACUACUCCUCU@LB@3'-UUU...CAGUU A AUC AUUAG...GUU-5'@LB@ | |@LB@ 122 95@LB@@LB@@LB@Energy -18.24 kcal/mol@LB@Hybridization Energy -30.1565 kcal/mol@LB@Unfolding Energy - mRNA 6.37386 kcal/mol@LB@Unfolding Energy - sRNA 5.54718 kcal/mol@LB@@LB@Position - mRNA 168 -- 194@LB@Position - sRNA 96 -- 121@LB@Position Seed - mRNA 188 -- 194@LB@Position Seed - sRNA 96 -- 102@LB@ |
8 |
1.007e-05 |
0.004211 |
pa3621 |
fdxA |
-18.47 |
0.000724 |
244 -- 255 |
71 -- 82 |
ferredoxin I |
|
_____________243__________256\n_____________|____________|\n5'-CCU...AUACA____________AAGUC...UGG-3'\n______________CCGACUGCGUGG\n______________||||||||||||\n______________GGCUGACGCACC\n3'-UUU...UCUCA____________CAGAG...GUU-5'\n_____________|____________|\n_____________83___________70\n |
249 -- 255 |
71 -- 77 |
-26.3412 kcal/mol |
3.76302 kcal/mol |
4.10469 kcal/mol |
243 256@LB@ | |@LB@5'-CCU...AUACA AAGUC...UGG-3'@LB@ CCGACUGCGUGG@LB@ ||||||||||||@LB@ GGCUGACGCACC@LB@3'-UUU...UCUCA CAGAG...GUU-5'@LB@ | |@LB@ 83 70@LB@@LB@@LB@Energy -18.47 kcal/mol@LB@Hybridization Energy -26.3412 kcal/mol@LB@Unfolding Energy - mRNA 3.76302 kcal/mol@LB@Unfolding Energy - sRNA 4.10469 kcal/mol@LB@@LB@Position - mRNA 244 -- 255@LB@Position - sRNA 71 -- 82@LB@Position Seed - mRNA 249 -- 255@LB@Position Seed - sRNA 71 -- 77@LB@ |
10 |
1.1e-05 |
0.004211 |
pa5300 |
cycB |
-16.80 |
0.002828 |
155 -- 174 |
99 -- 117 |
cytochrome C5 |
|
_____________154__________________175\n_____________|____________________|\n5'-GGG...CCGGG______A____AC_______GUGUA...GCA-3'\n______________UGUGAU_AGCC__GAUGAGG\n______________:|||||_||||__|||||||\n______________GCACUA_UCGG__CUACUCC\n3'-UUU...UUUUG______A____A________UCUAU...GUU-5'\n_____________|____________________|\n_____________118__________________98\n |
168 -- 174 |
99 -- 105 |
-24.2788 kcal/mol |
5.2486 kcal/mol |
2.23779 kcal/mol |
154 175@LB@ | |@LB@5'-GGG...CCGGG A AC GUGUA...GCA-3'@LB@ UGUGAU AGCC GAUGAGG@LB@ :||||| |||| |||||||@LB@ GCACUA UCGG CUACUCC@LB@3'-UUU...UUUUG A A UCUAU...GUU-5'@LB@ | |@LB@ 118 98@LB@@LB@@LB@Energy -16.80 kcal/mol@LB@Hybridization Energy -24.2788 kcal/mol@LB@Unfolding Energy - mRNA 5.2486 kcal/mol@LB@Unfolding Energy - sRNA 2.23779 kcal/mol@LB@@LB@Position - mRNA 155 -- 174@LB@Position - sRNA 99 -- 117@LB@Position Seed - mRNA 168 -- 174@LB@Position Seed - sRNA 99 -- 105@LB@ |
11 |
1.195e-05 |
0.004211 |
pa3638 |
N/A |
-14.67 |
0.012752 |
102 -- 115 |
100 -- 120 |
tRNA(Ile)-lysidine synthase |
|
_____________101___________________116\n_____________|_____________________|\n5'-GCG...GUUAC_____________________CUACG...CCA-3'\n______________GACC_______GCCUGAUGAG\n______________:|||_______||||||||||\n______________UUGG_______CGGACUACUC\n3'-UUU...AGUUU____CACUAAU__________CUCUA...GUU-5'\n_____________|_____________________|\n_____________121___________________99\n |
109 -- 115 |
100 -- 106 |
-19.8992 kcal/mol |
2.98005 kcal/mol |
2.24919 kcal/mol |
101 116@LB@ | |@LB@5'-GCG...GUUAC CUACG...CCA-3'@LB@ GACC GCCUGAUGAG@LB@ :||| ||||||||||@LB@ UUGG CGGACUACUC@LB@3'-UUU...AGUUU CACUAAU CUCUA...GUU-5'@LB@ | |@LB@ 121 99@LB@@LB@@LB@Energy -14.67 kcal/mol@LB@Hybridization Energy -19.8992 kcal/mol@LB@Unfolding Energy - mRNA 2.98005 kcal/mol@LB@Unfolding Energy - sRNA 2.24919 kcal/mol@LB@@LB@Position - mRNA 102 -- 115@LB@Position - sRNA 100 -- 120@LB@Position Seed - mRNA 109 -- 115@LB@Position Seed - sRNA 100 -- 106@LB@ |
12 |
1.22e-05 |
0.004211 |
pa3312 |
N/A |
-10.60 |
0.134070 |
231 -- 250 |
100 -- 119 |
3-hydroxyisobutyrate dehydrogenase |
|
_____________230__________________251\n_____________|____________________|\n5'-CGG...CCUUC____GUCUC___________CGUGC...UGU-3'\n______________GCCG_____GGCCUGAUGGG\n______________:|||_____:||||||||:|\n______________UGGC_____UCGGACUACUC\n3'-UUU...GUUUU____ACUAA___________CUCUA...GUU-5'\n_____________|____________________|\n_____________120__________________99\n |
244 -- 250 |
100 -- 106 |
-24.2186 kcal/mol |
11.3713 kcal/mol |
2.24903 kcal/mol |
230 251@LB@ | |@LB@5'-CGG...CCUUC GUCUC CGUGC...UGU-3'@LB@ GCCG GGCCUGAUGGG@LB@ :||| :||||||||:|@LB@ UGGC UCGGACUACUC@LB@3'-UUU...GUUUU ACUAA CUCUA...GUU-5'@LB@ | |@LB@ 120 99@LB@@LB@@LB@Energy -10.60 kcal/mol@LB@Hybridization Energy -24.2186 kcal/mol@LB@Unfolding Energy - mRNA 11.3713 kcal/mol@LB@Unfolding Energy - sRNA 2.24903 kcal/mol@LB@@LB@Position - mRNA 231 -- 250@LB@Position - sRNA 100 -- 119@LB@Position Seed - mRNA 244 -- 250@LB@Position Seed - sRNA 100 -- 106@LB@ |
13 |
1.26e-05 |
0.004211 |
pa3276 |
N/A |
-14.47 |
0.014594 |
182 -- 242 |
38 -- 108 |
'Product name confidence: class 4 (Homologs of previously reported genes of unknown function or no similarity to any previously reported sequences)' |
|
_____________181______________________________________________________________________243\n_____________|________________________________________________________________________|\n5'-CUU...UCCGU____UUCU____UACCC___U_________AUCCAUC_____A_______________C_____________CCGGG...ACA-3'\n______________UCUG____GGAG_____CUG_GGAGUCUGA________GUCU__________UGGCUG_AUC_CGCGACUGG\n______________:|||____||||_____|||_:|||||:||________||||__________:|||||_|||_||||||::|\n______________GGAC____CCUC_____GAC_UCUCAGGCU________CAGA__________GCCGAC_UAG_GCGCUGGUC\n3'-UUU...UAAUC____UACU____UAUUA___U_________GACGCACC____GAGUCGAAUG__________A_________AACUC...GUU-5'\n_____________|________________________________________________________________________|\n_____________109______________________________________________________________________37\n |
236 -- 242 |
38 -- 44 |
-54.8405 kcal/mol |
17.042 kcal/mol |
23.3354 kcal/mol |
181 243@LB@ | |@LB@5'-CUU...UCCGU UUCU UACCC U AUCCAUC A C CCGGG...ACA-3'@LB@ UCUG GGAG CUG GGAGUCUGA GUCU UGGCUG AUC CGCGACUGG@LB@ :||| |||| ||| :|||||:|| |||| :||||| ||| ||||||::|@LB@ GGAC CCUC GAC UCUCAGGCU CAGA GCCGAC UAG GCGCUGGUC@LB@3'-UUU...UAAUC UACU UAUUA U GACGCACC GAGUCGAAUG A AACUC...GUU-5'@LB@ | |@LB@ 109 37@LB@@LB@@LB@Energy -14.47 kcal/mol@LB@Hybridization Energy -54.8405 kcal/mol@LB@Unfolding Energy - mRNA 17.042 kcal/mol@LB@Unfolding Energy - sRNA 23.3354 kcal/mol@LB@@LB@Position - mRNA 182 -- 242@LB@Position - sRNA 38 -- 108@LB@Position Seed - mRNA 236 -- 242@LB@Position Seed - sRNA 38 -- 44@LB@ |