20 |
4.966e-05 |
0.01105 |
pa5388 |
N/A |
-18.86 |
0.000517 |
168 -- 251 |
37 -- 123 |
'Product name confidence: class 4:Homologs of previously reported genes of unknown function or no similarity to any previously reported sequences.' |
pa3236 pa0030 pa5378 |
_____________167________________________________________________________________________________________252\n_____________|__________________________________________________________________________________________|\n5'-GGG...CGCAG______AAUCAA_____GCAC_______GACCGA______CGA________CCAG_____G____GC___CU__________________GGCGC...UGG-3'\n______________AAAAAC______UAGCC____GAGGGGA______UGAAGA___CGAUU_CG_______CU_GGCU__GCC__GCUGAUC_C_UGGCCAGU\n______________||||||______|||||____||||:||______||||||___|||:|_||_______||_:|||__:||__|||||||_|_:|:|||||\n______________UUUUUG______AUCGG____CUCCUCU______ACUUCU___GCUGA_GC_______GA_UCGA__UGG__CGACUAG_G_GCUGGUCA\n3'-UUU...CCCAG______GCACUA_____ACUA_______AUUAG_______CAG_____C__ACCCAGA__G____A____C________A_C________ACUCA...GUU-5'\n_____________|__________________________________________________________________________________________|\n_____________124________________________________________________________________________________________36\n |
245 -- 251 |
37 -- 43 |
-69.2339 kcal/mol |
26.9773 kcal/mol |
23.4067 kcal/mol |
167 252@LB@ | |@LB@5'-GGG...CGCAG AAUCAA GCAC GACCGA CGA CCAG G GC CU GGCGC...UGG-3'@LB@ AAAAAC UAGCC GAGGGGA UGAAGA CGAUU CG CU GGCU GCC GCUGAUC C UGGCCAGU@LB@ |||||| ||||| ||||:|| |||||| |||:| || || :||| :|| ||||||| | :|:|||||@LB@ UUUUUG AUCGG CUCCUCU ACUUCU GCUGA GC GA UCGA UGG CGACUAG G GCUGGUCA@LB@3'-UUU...CCCAG GCACUA ACUA AUUAG CAG C ACCCAGA G A C A C ACUCA...GUU-5'@LB@ | |@LB@ 124 36@LB@@LB@@LB@Energy -18.86 kcal/mol@LB@Hybridization Energy -69.2339 kcal/mol@LB@Unfolding Energy - mRNA 26.9773 kcal/mol@LB@Unfolding Energy - sRNA 23.4067 kcal/mol@LB@@LB@Position - mRNA 168 -- 251@LB@Position - sRNA 37 -- 123@LB@Position Seed - mRNA 245 -- 251@LB@Position Seed - sRNA 37 -- 43@LB@ |
22 |
5.562e-05 |
0.01105 |
pa2264 |
N/A |
-16.58 |
0.003334 |
170 -- 193 |
98 -- 122 |
'Product name confidence: class 4 (Homologs of previously reported genes of unknown function or no similarity to any previously reported sequences)' |
|
_____________169_______________________194\n_____________|_________________________|\n5'-CCU...AAGAC___________GAU__A________CCCCA...AUG-3'\n______________GAAACCGUGAU___CC_GA_GAGGA\n______________:||||||||||___||_||_|||||\n______________UUUUGGCACUA___GG_CU_CUCCU\n3'-UUU...CCAGU___________AUC__A__A_____CUAUU...GUU-5'\n_____________|_________________________|\n_____________123_______________________97\n |
174 -- 180 |
112 -- 118 |
-25.8581 kcal/mol |
7.03089 kcal/mol |
2.25226 kcal/mol |
169 194@LB@ | |@LB@5'-CCU...AAGAC GAU A CCCCA...AUG-3'@LB@ GAAACCGUGAU CC GA GAGGA@LB@ :|||||||||| || || |||||@LB@ UUUUGGCACUA GG CU CUCCU@LB@3'-UUU...CCAGU AUC A A CUAUU...GUU-5'@LB@ | |@LB@ 123 97@LB@@LB@@LB@Energy -16.58 kcal/mol@LB@Hybridization Energy -25.8581 kcal/mol@LB@Unfolding Energy - mRNA 7.03089 kcal/mol@LB@Unfolding Energy - sRNA 2.25226 kcal/mol@LB@@LB@Position - mRNA 170 -- 193@LB@Position - sRNA 98 -- 122@LB@Position Seed - mRNA 174 -- 180@LB@Position Seed - sRNA 112 -- 118@LB@ |
27 |
6.94e-05 |
0.01177 |
pa5535 |
N/A |
-11.95 |
0.066023 |
197 -- 251 |
53 -- 120 |
'Product name confidence: class 4 (Homologs of previously reported genes of unknown function or no similarity to any previously reported sequences)' |
|
_____________196______________________________________________________________________252\n_____________|________________________________________________________________________|\n5'-GAG...UUACC________ACCAAC____AC_______________UCA______U_____CC__C_________________AAGAG...GGG-3'\n______________AACCGUGA______GCCU______________CUG______CCG_GCUGU__GG_UUUCUCGGC__GCCGGC\n______________||||||||______||||______________|||______|||_:|||:__||_|:||||:||__:|||||\n______________UUGGCACU______CGGA______________GAC______GGC_UGACG__CC_AGAGAGUCG__UGGCCG\n3'-UUU...AGUUU________AAU_______CUACUCCUCUAUUA___UUCUCA_________CA__C_________AA______ACUAG...GUU-5'\n_____________|________________________________________________________________________|\n_____________121______________________________________________________________________52\n |
239 -- 245 |
61 -- 67 |
-49.0988 kcal/mol |
18.4451 kcal/mol |
18.7053 kcal/mol |
196 252@LB@ | |@LB@5'-GAG...UUACC ACCAAC AC UCA U CC C AAGAG...GGG-3'@LB@ AACCGUGA GCCU CUG CCG GCUGU GG UUUCUCGGC GCCGGC@LB@ |||||||| |||| ||| ||| :|||: || |:||||:|| :|||||@LB@ UUGGCACU CGGA GAC GGC UGACG CC AGAGAGUCG UGGCCG@LB@3'-UUU...AGUUU AAU CUACUCCUCUAUUA UUCUCA CA C AA ACUAG...GUU-5'@LB@ | |@LB@ 121 52@LB@@LB@@LB@Energy -11.95 kcal/mol@LB@Hybridization Energy -49.0988 kcal/mol@LB@Unfolding Energy - mRNA 18.4451 kcal/mol@LB@Unfolding Energy - sRNA 18.7053 kcal/mol@LB@@LB@Position - mRNA 197 -- 251@LB@Position - sRNA 53 -- 120@LB@Position Seed - mRNA 239 -- 245@LB@Position Seed - sRNA 61 -- 67@LB@ |
28 |
7.532e-05 |
0.01177 |
pa2865 |
N/A |
-15.38 |
0.007930 |
179 -- 247 |
40 -- 110 |
glycosylase |
|
_____________178__________________________________________________________________________248\n_____________|____________________________________________________________________________|\n5'-CCG...CAUCG_______CCUCU_____CCUGGA___C_C________________________U_____U______G_________CUUGC...AAC-3'\n______________AGCCUGG_____GGAGA______UGA_G_GUCUG_UUGC_UG___CUUUC_GC_UUGCC_GCUGGU_CUCGC_ACC\n______________||||||:_____|||||______|||_|_|||:|_:|||_||___||:||_||_||:||_||||:|_|||||_|||\n______________UCGGACU_____CCUCU______ACU_C_CAGGC_GACG_AC___GAGAG_CG_AAUGG_CGACUA_GAGCG_UGG\n3'-UUU...ACUAA_______ACU_______AUUAG____U_U_____U____C__CCA_____U________C____________C___UCAAC...GUU-5'\n_____________|____________________________________________________________________________|\n_____________111__________________________________________________________________________39\n |
179 -- 185 |
104 -- 110 |
-64.7758 kcal/mol |
26.0418 kcal/mol |
23.3621 kcal/mol |
178 248@LB@ | |@LB@5'-CCG...CAUCG CCUCU CCUGGA C C U U G CUUGC...AAC-3'@LB@ AGCCUGG GGAGA UGA G GUCUG UUGC UG CUUUC GC UUGCC GCUGGU CUCGC ACC@LB@ ||||||: ||||| ||| | |||:| :||| || ||:|| || ||:|| ||||:| ||||| |||@LB@ UCGGACU CCUCU ACU C CAGGC GACG AC GAGAG CG AAUGG CGACUA GAGCG UGG@LB@3'-UUU...ACUAA ACU AUUAG U U U C CCA U C C UCAAC...GUU-5'@LB@ | |@LB@ 111 39@LB@@LB@@LB@Energy -15.38 kcal/mol@LB@Hybridization Energy -64.7758 kcal/mol@LB@Unfolding Energy - mRNA 26.0418 kcal/mol@LB@Unfolding Energy - sRNA 23.3621 kcal/mol@LB@@LB@Position - mRNA 179 -- 247@LB@Position - sRNA 40 -- 110@LB@Position Seed - mRNA 179 -- 185@LB@Position Seed - sRNA 104 -- 110@LB@ |
29 |
7.803e-05 |
0.01177 |
pa5491 |
N/A |
-19.34 |
0.000334 |
185 -- 216 |
75 -- 108 |
cytochrome |
|
_____________184_________________________________217\n_____________|___________________________________|\n5'-GGG...UUCCC___________C______A______AA________UCGCA...CGU-3'\n______________CCUGAUGAGGA___GAUC_UGAAGA__CUG_CUGC\n______________|||||||||||___:|||_||||||__|:|_||||\n______________GGACUACUCCU___UUAG_ACUUCU__GGC_GACG\n3'-UUU...UAAUC___________CUA___________CA___U____CACCC...GUU-5'\n_____________|___________________________________|\n_____________109_________________________________74\n |
189 -- 195 |
98 -- 104 |
-37.6738 kcal/mol |
6.8106 kcal/mol |
11.5256 kcal/mol |
184 217@LB@ | |@LB@5'-GGG...UUCCC C A AA UCGCA...CGU-3'@LB@ CCUGAUGAGGA GAUC UGAAGA CUG CUGC@LB@ ||||||||||| :||| |||||| |:| ||||@LB@ GGACUACUCCU UUAG ACUUCU GGC GACG@LB@3'-UUU...UAAUC CUA CA U CACCC...GUU-5'@LB@ | |@LB@ 109 74@LB@@LB@@LB@Energy -19.34 kcal/mol@LB@Hybridization Energy -37.6738 kcal/mol@LB@Unfolding Energy - mRNA 6.8106 kcal/mol@LB@Unfolding Energy - sRNA 11.5256 kcal/mol@LB@@LB@Position - mRNA 185 -- 216@LB@Position - sRNA 75 -- 108@LB@Position Seed - mRNA 189 -- 195@LB@Position Seed - sRNA 98 -- 104@LB@ |
30 |
8.033e-05 |
0.01177 |
pa3717 |
N/A |
-10.05 |
0.175331 |
209 -- 216 |
75 -- 82 |
FkbP-type peptidyl-prolyl cis-trans isomerase |
|
_____________208______217\n_____________|________|\n5'-UCU...AACGA________AGAUC...AAG-3'\n______________CCGACUGC\n______________||||||||\n______________GGCUGACG\n3'-UUU...UCUCA________CACCC...GUU-5'\n_____________|________|\n_____________83_______74\n |
210 -- 216 |
75 -- 81 |
-16.1929 kcal/mol |
2.05248 kcal/mol |
4.09516 kcal/mol |
208 217@LB@ | |@LB@5'-UCU...AACGA AGAUC...AAG-3'@LB@ CCGACUGC@LB@ ||||||||@LB@ GGCUGACG@LB@3'-UUU...UCUCA CACCC...GUU-5'@LB@ | |@LB@ 83 74@LB@@LB@@LB@Energy -10.05 kcal/mol@LB@Hybridization Energy -16.1929 kcal/mol@LB@Unfolding Energy - mRNA 2.05248 kcal/mol@LB@Unfolding Energy - sRNA 4.09516 kcal/mol@LB@@LB@Position - mRNA 209 -- 216@LB@Position - sRNA 75 -- 82@LB@Position Seed - mRNA 210 -- 216@LB@Position Seed - sRNA 75 -- 81@LB@ |
32 |
8.271e-05 |
0.01177 |
pa5176 |
N/A |
-17.77 |
0.001308 |
216 -- 255 |
75 -- 119 |
ADP-ribose diphosphatase NudE |
|
_____________215_____________________________________________256\n_____________|_______________________________________________|\n5'-GAA...AACCC_____ACUC___________C_____C___GC_______________UCGAU...AGC-3'\n______________ACCGU_____GCC_____AG_GAGAU_GUC__GAAGAG_CCGACUGU\n______________|||||_____|||_____||_|||||_:||__||||||_|||||||:\n______________UGGCA_____CGG_____UC_CUCUA_UAG__CUUCUC_GGCUGACG\n3'-UUU...GUUUU_____CUAAU___ACUAC________U___A_______A________CACCC...GUU-5'\n_____________|_______________________________________________|\n_____________120_____________________________________________74\n |
249 -- 255 |
75 -- 81 |
-41.4292 kcal/mol |
11.4765 kcal/mol |
12.1884 kcal/mol |
215 256@LB@ | |@LB@5'-GAA...AACCC ACUC C C GC UCGAU...AGC-3'@LB@ ACCGU GCC AG GAGAU GUC GAAGAG CCGACUGU@LB@ ||||| ||| || ||||| :|| |||||| |||||||:@LB@ UGGCA CGG UC CUCUA UAG CUUCUC GGCUGACG@LB@3'-UUU...GUUUU CUAAU ACUAC U A A CACCC...GUU-5'@LB@ | |@LB@ 120 74@LB@@LB@@LB@Energy -17.77 kcal/mol@LB@Hybridization Energy -41.4292 kcal/mol@LB@Unfolding Energy - mRNA 11.4765 kcal/mol@LB@Unfolding Energy - sRNA 12.1884 kcal/mol@LB@@LB@Position - mRNA 216 -- 255@LB@Position - sRNA 75 -- 119@LB@Position Seed - mRNA 249 -- 255@LB@Position Seed - sRNA 75 -- 81@LB@ |
33 |
8.454e-05 |
0.01177 |
pa3481 |
N/A |
-18.00 |
0.001084 |
15 -- 90 |
50 -- 121 |
'Product name confidence: class 4 (Homologs of previously reported genes of unknown function or no similarity to any previously reported sequences)' |
|
_____________14_________________________________________________________________________________91\n_____________|__________________________________________________________________________________|\n5'-GUC...GAAUG______________G_A_________GCG_____UAACGAG___CU_______U__GGACAUGGGU________________GAGCU...AGG-3'\n______________GAACCGU___UGGC_U___GGGGAGG____CUGG_______GAU__UGCGUGG_UC__________UCGGCUUAUCGGCUGA\n______________:||||||___|:||_|___|:||||:____|||:_______||:__|||||||_||__________||:|||||:|||||||\n______________UUUGGCA___AUCG_A___CUCCUCU____GACU_______CUG__ACGCACC_AG__________AGUCGAAUGGCCGACU\n3'-UUU...CAGUU_______CUA____G_CUA_______AUUA____UCUCAGG____________C__AG________________________AGAGC...GUU-5'\n_____________|__________________________________________________________________________________|\n_____________122________________________________________________________________________________49\n |
84 -- 90 |
50 -- 56 |
-67.3131 kcal/mol |
26.9383 kcal/mol |
22.3832 kcal/mol |
14 91@LB@ | |@LB@5'-GUC...GAAUG G A GCG UAACGAG CU U GGACAUGGGU GAGCU...AGG-3'@LB@ GAACCGU UGGC U GGGGAGG CUGG GAU UGCGUGG UC UCGGCUUAUCGGCUGA@LB@ :|||||| |:|| | |:||||: |||: ||: ||||||| || ||:|||||:|||||||@LB@ UUUGGCA AUCG A CUCCUCU GACU CUG ACGCACC AG AGUCGAAUGGCCGACU@LB@3'-UUU...CAGUU CUA G CUA AUUA UCUCAGG C AG AGAGC...GUU-5'@LB@ | |@LB@ 122 49@LB@@LB@@LB@Energy -18.00 kcal/mol@LB@Hybridization Energy -67.3131 kcal/mol@LB@Unfolding Energy - mRNA 26.9383 kcal/mol@LB@Unfolding Energy - sRNA 22.3832 kcal/mol@LB@@LB@Position - mRNA 15 -- 90@LB@Position - sRNA 50 -- 121@LB@Position Seed - mRNA 84 -- 90@LB@Position Seed - sRNA 50 -- 56@LB@ |
34 |
0.0001037 |
0.01388 |
pa0494 |
N/A |
-14.76 |
0.012046 |
49 -- 92 |
75 -- 117 |
acetyl-CoA carboxylase biotin carboxylase subunit |
|
_____________48_______________________________________________93\n_____________|________________________________________________|\n5'-CGA...GGCAG______C__G_____C________________C__UUU_____AG___AGGCC...CGG-3'\n______________CGUGAU_GG_CUGAU___GAGGUGA__UGAAG_AG___UCCGA__UGC\n______________||||||_:|_|||||___|||:|:|__|||||_||___|||||__|||\n______________GCACUA_UC_GACUA___CUCUAUU__ACUUC_UC___AGGCU__ACG\n3'-UUU...UUUUG______A__G_____CUC_______AG________________G____CACCC...GUU-5'\n_____________|________________________________________________|\n_____________118______________________________________________74\n |
65 -- 71 |
93 -- 99 |
-39.1416 kcal/mol |
12.2169 kcal/mol |
12.1721 kcal/mol |
48 93@LB@ | |@LB@5'-CGA...GGCAG C G C C UUU AG AGGCC...CGG-3'@LB@ CGUGAU GG CUGAU GAGGUGA UGAAG AG UCCGA UGC@LB@ |||||| :| ||||| |||:|:| ||||| || ||||| |||@LB@ GCACUA UC GACUA CUCUAUU ACUUC UC AGGCU ACG@LB@3'-UUU...UUUUG A G CUC AG G CACCC...GUU-5'@LB@ | |@LB@ 118 74@LB@@LB@@LB@Energy -14.76 kcal/mol@LB@Hybridization Energy -39.1416 kcal/mol@LB@Unfolding Energy - mRNA 12.2169 kcal/mol@LB@Unfolding Energy - sRNA 12.1721 kcal/mol@LB@@LB@Position - mRNA 49 -- 92@LB@Position - sRNA 75 -- 117@LB@Position Seed - mRNA 65 -- 71@LB@Position Seed - sRNA 93 -- 99@LB@ |
35 |
0.0001057 |
0.01388 |
pa1103 |
N/A |
-18.12 |
0.000977 |
185 -- 207 |
81 -- 102 |
flagellar assembly protein FliH |
|
_____________184_____________________208\n_____________|_______________________|\n5'-CGA...GUGGC_________________U_____CCCAC...AGC-3'\n______________GAGGAGAUGAUCUGAGG_GGUCC\n______________||||||||:||||||:|_:||||\n______________CUCCUCUAUUAGACUUC_UCAGG\n3'-UUU...GACUA_______________________CUGAC...GUU-5'\n_____________|_______________________|\n_____________103_____________________80\n |
195 -- 201 |
86 -- 92 |
-35.642 kcal/mol |
10.0244 kcal/mol |
7.49511 kcal/mol |
184 208@LB@ | |@LB@5'-CGA...GUGGC U CCCAC...AGC-3'@LB@ GAGGAGAUGAUCUGAGG GGUCC@LB@ ||||||||:||||||:| :||||@LB@ CUCCUCUAUUAGACUUC UCAGG@LB@3'-UUU...GACUA CUGAC...GUU-5'@LB@ | |@LB@ 103 80@LB@@LB@@LB@Energy -18.12 kcal/mol@LB@Hybridization Energy -35.642 kcal/mol@LB@Unfolding Energy - mRNA 10.0244 kcal/mol@LB@Unfolding Energy - sRNA 7.49511 kcal/mol@LB@@LB@Position - mRNA 185 -- 207@LB@Position - sRNA 81 -- 102@LB@Position Seed - mRNA 195 -- 201@LB@Position Seed - sRNA 86 -- 92@LB@ |