| 130 |
0.002619 |
0.0912 |
pa1320 |
cyoD |
-12.20 |
0.057664 |
172 -- 192 |
99 -- 119 |
cytochrome o ubiquinol oxidase subunit IV |
|
_____________171____________________193\n_____________|______________________|\n5'-UUC...UCUUC_____C_UC_____________GCCCU...CGU-3'\n______________ACCGU_G__UA_CCUGAUGGGG\n______________|||||_|__||_|||||||:||\n______________UGGCA_C__AU_GGACUACUCC\n3'-UUU...GUUUU_______UA__C__________UCUAU...GUU-5'\n_____________|______________________|\n_____________120____________________98\n |
186 -- 192 |
99 -- 105 |
-23.5184 kcal/mol |
9.07359 kcal/mol |
2.24961 kcal/mol |
171 193@LB@ | |@LB@5'-UUC...UCUUC C UC GCCCU...CGU-3'@LB@ ACCGU G UA CCUGAUGGGG@LB@ ||||| | || |||||||:||@LB@ UGGCA C AU GGACUACUCC@LB@3'-UUU...GUUUU UA C UCUAU...GUU-5'@LB@ | |@LB@ 120 98@LB@@LB@@LB@Energy -12.20 kcal/mol@LB@Hybridization Energy -23.5184 kcal/mol@LB@Unfolding Energy - mRNA 9.07359 kcal/mol@LB@Unfolding Energy - sRNA 2.24961 kcal/mol@LB@@LB@Position - mRNA 172 -- 192@LB@Position - sRNA 99 -- 119@LB@Position Seed - mRNA 186 -- 192@LB@Position Seed - sRNA 99 -- 105@LB@ |
| 151 |
0.003549 |
0.1073 |
pa4443 |
cysD |
-8.92 |
0.288201 |
61 -- 67 |
74 -- 80 |
sulfate adenylyltransferase subunit 2 |
|
_____________60______68\n_____________|_______|\n5'-CUU...UCGCC_______AGGCU...ACU-3'\n______________GGCUGCG\n______________|:|||||\n______________CUGACGC\n3'-UUU...UCAGG_______ACCCA...GUU-5'\n_____________|_______|\n_____________81______73\n |
61 -- 67 |
74 -- 80 |
-10.9675 kcal/mol |
1.23954 kcal/mol |
0.805988 kcal/mol |
60 68@LB@ | |@LB@5'-CUU...UCGCC AGGCU...ACU-3'@LB@ GGCUGCG@LB@ |:|||||@LB@ CUGACGC@LB@3'-UUU...UCAGG ACCCA...GUU-5'@LB@ | |@LB@ 81 73@LB@@LB@@LB@Energy -8.92 kcal/mol@LB@Hybridization Energy -10.9675 kcal/mol@LB@Unfolding Energy - mRNA 1.23954 kcal/mol@LB@Unfolding Energy - sRNA 0.805988 kcal/mol@LB@@LB@Position - mRNA 61 -- 67@LB@Position - sRNA 74 -- 80@LB@Position Seed - mRNA 61 -- 67@LB@Position Seed - sRNA 74 -- 80@LB@ |
| 66 |
0.0006609 |
0.04603 |
pa1980 |
eraR |
-16.49 |
0.003558 |
189 -- 219 |
71 -- 102 |
response regulator EraR |
|
_____________188_______________________________220\n_____________|_________________________________|\n5'-GUG...ACUGA_______GGACGA__________U_________ACGAU...GCG-3'\n______________GAGGAGA______UGAAG_GUCC_GCUG_GUGG\n______________|||||||______|||||_||||_:|||_||||\n______________CUCCUCU______ACUUC_CAGG_UGAC_CACC\n3'-UUU...GACUA_______AUUAG______U____C____G____CAGAG...GUU-5'\n_____________|_________________________________|\n_____________103_______________________________70\n |
189 -- 195 |
96 -- 102 |
-37.796 kcal/mol |
12.0241 kcal/mol |
9.28371 kcal/mol |
188 220@LB@ | |@LB@5'-GUG...ACUGA GGACGA U ACGAU...GCG-3'@LB@ GAGGAGA UGAAG GUCC GCUG GUGG@LB@ ||||||| ||||| |||| :||| ||||@LB@ CUCCUCU ACUUC CAGG UGAC CACC@LB@3'-UUU...GACUA AUUAG U C G CAGAG...GUU-5'@LB@ | |@LB@ 103 70@LB@@LB@@LB@Energy -16.49 kcal/mol@LB@Hybridization Energy -37.796 kcal/mol@LB@Unfolding Energy - mRNA 12.0241 kcal/mol@LB@Unfolding Energy - sRNA 9.28371 kcal/mol@LB@@LB@Position - mRNA 189 -- 219@LB@Position - sRNA 71 -- 102@LB@Position Seed - mRNA 189 -- 195@LB@Position Seed - sRNA 96 -- 102@LB@ |
| 23 |
5.711e-05 |
0.01105 |
pa2967 |
fabG |
-15.49 |
0.007349 |
171 -- 236 |
53 -- 111 |
3-oxoacyl-[acyl-carrier-protein] reductase FabG |
|
_____________170__________________________________________________________________237\n_____________|____________________________________________________________________|\n5'-CCC...CGCCC________GAGAGAGAA______G____CCAU_________AAG__AA____GCA_____A_______GCCAG...UCG-3'\n______________UGGCCUGA_________AGGAGA_AAUC____GAGUCUG_C___GU__GGUC___UUGGU__ACCGGC\n______________|:||||||_________||||||_||||____|||||:|_|___||__||||___|::|:__||||||\n______________AUCGGACU_________UCCUCU_UUAG____CUCAGGC_G___CA__CCAG___AGUCG__UGGCCG\n3'-UUU...CACUA________AC_____________A____ACUU_______U_ACG__C_____AG______AA______ACUAG...GUU-5'\n_____________|____________________________________________________________________|\n_____________112__________________________________________________________________52\n |
203 -- 209 |
80 -- 86 |
-53.5207 kcal/mol |
19.3634 kcal/mol |
18.6748 kcal/mol |
170 237@LB@ | |@LB@5'-CCC...CGCCC GAGAGAGAA G CCAU AAG AA GCA A GCCAG...UCG-3'@LB@ UGGCCUGA AGGAGA AAUC GAGUCUG C GU GGUC UUGGU ACCGGC@LB@ |:|||||| |||||| |||| |||||:| | || |||| |::|: ||||||@LB@ AUCGGACU UCCUCU UUAG CUCAGGC G CA CCAG AGUCG UGGCCG@LB@3'-UUU...CACUA AC A ACUU U ACG C AG AA ACUAG...GUU-5'@LB@ | |@LB@ 112 52@LB@@LB@@LB@Energy -15.49 kcal/mol@LB@Hybridization Energy -53.5207 kcal/mol@LB@Unfolding Energy - mRNA 19.3634 kcal/mol@LB@Unfolding Energy - sRNA 18.6748 kcal/mol@LB@@LB@Position - mRNA 171 -- 236@LB@Position - sRNA 53 -- 111@LB@Position Seed - mRNA 203 -- 209@LB@Position Seed - sRNA 80 -- 86@LB@ |
| 179 |
0.004617 |
0.1185 |
pa4812 |
fdnG |
-14.50 |
0.014314 |
180 -- 196 |
94 -- 109 |
formate dehydrogenase-O major subunit |
|
_____________179_______________197\n_____________|_________________|\n5'-CCC...CCUUU________C________CACGA...CCG-3'\n______________GCCUGAUG_AGGAGAUG\n______________||||||||_|||||||:\n______________CGGACUAC_UCCUCUAU\n3'-UUU...CUAAU_________________UAGAC...GUU-5'\n_____________|_________________|\n_____________110_______________93\n |
190 -- 196 |
94 -- 100 |
-26.4921 kcal/mol |
6.69504 kcal/mol |
5.30224 kcal/mol |
179 197@LB@ | |@LB@5'-CCC...CCUUU C CACGA...CCG-3'@LB@ GCCUGAUG AGGAGAUG@LB@ |||||||| |||||||:@LB@ CGGACUAC UCCUCUAU@LB@3'-UUU...CUAAU UAGAC...GUU-5'@LB@ | |@LB@ 110 93@LB@@LB@@LB@Energy -14.50 kcal/mol@LB@Hybridization Energy -26.4921 kcal/mol@LB@Unfolding Energy - mRNA 6.69504 kcal/mol@LB@Unfolding Energy - sRNA 5.30224 kcal/mol@LB@@LB@Position - mRNA 180 -- 196@LB@Position - sRNA 94 -- 109@LB@Position Seed - mRNA 190 -- 196@LB@Position Seed - sRNA 94 -- 100@LB@ |
| 8 |
1.007e-05 |
0.004211 |
pa3621 |
fdxA |
-18.47 |
0.000724 |
244 -- 255 |
71 -- 82 |
ferredoxin I |
|
_____________243__________256\n_____________|____________|\n5'-CCU...AUACA____________AAGUC...UGG-3'\n______________CCGACUGCGUGG\n______________||||||||||||\n______________GGCUGACGCACC\n3'-UUU...UCUCA____________CAGAG...GUU-5'\n_____________|____________|\n_____________83___________70\n |
249 -- 255 |
71 -- 77 |
-26.3412 kcal/mol |
3.76302 kcal/mol |
4.10469 kcal/mol |
243 256@LB@ | |@LB@5'-CCU...AUACA AAGUC...UGG-3'@LB@ CCGACUGCGUGG@LB@ ||||||||||||@LB@ GGCUGACGCACC@LB@3'-UUU...UCUCA CAGAG...GUU-5'@LB@ | |@LB@ 83 70@LB@@LB@@LB@Energy -18.47 kcal/mol@LB@Hybridization Energy -26.3412 kcal/mol@LB@Unfolding Energy - mRNA 3.76302 kcal/mol@LB@Unfolding Energy - sRNA 4.10469 kcal/mol@LB@@LB@Position - mRNA 244 -- 255@LB@Position - sRNA 71 -- 82@LB@Position Seed - mRNA 249 -- 255@LB@Position Seed - sRNA 71 -- 77@LB@ |
| 42 |
0.000247 |
0.02703 |
pa4550 |
fimU |
-17.01 |
0.002407 |
39 -- 109 |
35 -- 119 |
type 4 fimbrial biogenesis protein FimU |
pa4549 |
_____________38______________________________________________________________________________________110\n_____________|_______________________________________________________________________________________|\n5'-CCU...UCCGU____C__GC____A__________ACCG_______AA___________A____AUG____ACUU____A_____A____________UCCUG...UCA-3'\n______________ACCG_GA___GCC_____GGGAGA______GGAGA_________CGUG_G_CU___CAGC____CCGG_UGAUC_UG_GACCAGUUG\n______________||||_||___|||_____:|||||______|:|||_________||||_|_||___||||____||||_|||||_:|_|||||||||\n______________UGGC_CU___CGG_____UCCUCU______CUUCU_________GCAC_C_GA___GUCG____GGCC_ACUAG_GC_CUGGUCAAC\n3'-UUU...GUUUU____A__AAU___ACUAC______AUUAGA_____CAGGCUGAC____C_A__GA_____AAU_____G_____A__G_________UCACU...GUU-5'\n_____________|_______________________________________________________________________________________|\n_____________120_____________________________________________________________________________________34\n |
103 -- 109 |
35 -- 41 |
-60.4739 kcal/mol |
20.069 kcal/mol |
23.4074 kcal/mol |
38 110@LB@ | |@LB@5'-CCU...UCCGU C GC A ACCG AA A AUG ACUU A A UCCUG...UCA-3'@LB@ ACCG GA GCC GGGAGA GGAGA CGUG G CU CAGC CCGG UGAUC UG GACCAGUUG@LB@ |||| || ||| :||||| |:||| |||| | || |||| |||| ||||| :| |||||||||@LB@ UGGC CU CGG UCCUCU CUUCU GCAC C GA GUCG GGCC ACUAG GC CUGGUCAAC@LB@3'-UUU...GUUUU A AAU ACUAC AUUAGA CAGGCUGAC C A GA AAU G A G UCACU...GUU-5'@LB@ | |@LB@ 120 34@LB@@LB@@LB@Energy -17.01 kcal/mol@LB@Hybridization Energy -60.4739 kcal/mol@LB@Unfolding Energy - mRNA 20.069 kcal/mol@LB@Unfolding Energy - sRNA 23.4074 kcal/mol@LB@@LB@Position - mRNA 39 -- 109@LB@Position - sRNA 35 -- 119@LB@Position Seed - mRNA 103 -- 109@LB@Position Seed - sRNA 35 -- 41@LB@ |
| 196 |
0.005339 |
0.1252 |
pa1085 |
flgJ |
-8.97 |
0.282317 |
179 -- 193 |
98 -- 119 |
peptidoglycan hydrolase FlgJ |
|
_____________178____________________194\n_____________|______________________|\n5'-GGU...ACCUG______________________CGACG...GCG-3'\n______________AUCGUGAUU_______UGAGGA\n______________|:|||||||_______||||||\n______________UGGCACUAA_______ACUCCU\n3'-UUU...GUUUU_________UCGGACU______CUAUU...GUU-5'\n_____________|______________________|\n_____________120____________________97\n |
181 -- 187 |
111 -- 117 |
-15.6275 kcal/mol |
4.40725 kcal/mol |
2.25153 kcal/mol |
178 194@LB@ | |@LB@5'-GGU...ACCUG CGACG...GCG-3'@LB@ AUCGUGAUU UGAGGA@LB@ |:||||||| ||||||@LB@ UGGCACUAA ACUCCU@LB@3'-UUU...GUUUU UCGGACU CUAUU...GUU-5'@LB@ | |@LB@ 120 97@LB@@LB@@LB@Energy -8.97 kcal/mol@LB@Hybridization Energy -15.6275 kcal/mol@LB@Unfolding Energy - mRNA 4.40725 kcal/mol@LB@Unfolding Energy - sRNA 2.25153 kcal/mol@LB@@LB@Position - mRNA 179 -- 193@LB@Position - sRNA 98 -- 119@LB@Position Seed - mRNA 181 -- 187@LB@Position Seed - sRNA 111 -- 117@LB@ |
| 191 |
0.005174 |
0.1243 |
pa4409 |
ftsQ |
-12.87 |
0.039132 |
188 -- 243 |
45 -- 102 |
cell division protein FtsQ |
|
_____________187__________________________________________________________244\n_____________|____________________________________________________________|\n5'-ACG...GAGGC__________GCCA____U____GU_____UCC____A______AAC_____G_______GCCGC...AAC-3'\n______________GAGGGGAUAA____UGAA_GG_C__ACUGC____GUC__UCAGC___CCGGU_GA_CUCG\n______________||||:|||||____||||_:|_|__|||||____|||__|||||___||||:_||_||||\n______________CUCCUCUAUU____ACUU_UC_G__UGACG____CAG__AGUCG___GGCCG_CU_GAGC\n3'-UUU...GACUA__________AG______C__A_GC_____CACC___AG_____AAU_____A__A____GCUGG...GUU-5'\n_____________|____________________________________________________________|\n_____________103__________________________________________________________44\n |
190 -- 196 |
94 -- 100 |
-51.9774 kcal/mol |
17.8775 kcal/mol |
21.2308 kcal/mol |
187 244@LB@ | |@LB@5'-ACG...GAGGC GCCA U GU UCC A AAC G GCCGC...AAC-3'@LB@ GAGGGGAUAA UGAA GG C ACUGC GUC UCAGC CCGGU GA CUCG@LB@ ||||:||||| |||| :| | ||||| ||| ||||| ||||: || ||||@LB@ CUCCUCUAUU ACUU UC G UGACG CAG AGUCG GGCCG CU GAGC@LB@3'-UUU...GACUA AG C A GC CACC AG AAU A A GCUGG...GUU-5'@LB@ | |@LB@ 103 44@LB@@LB@@LB@Energy -12.87 kcal/mol@LB@Hybridization Energy -51.9774 kcal/mol@LB@Unfolding Energy - mRNA 17.8775 kcal/mol@LB@Unfolding Energy - sRNA 21.2308 kcal/mol@LB@@LB@Position - mRNA 188 -- 243@LB@Position - sRNA 45 -- 102@LB@Position Seed - mRNA 190 -- 196@LB@Position Seed - sRNA 94 -- 100@LB@ |
| 26 |
6.892e-05 |
0.01177 |
pa0375 |
ftsX |
-18.23 |
0.000891 |
153 -- 205 |
100 -- 144 |
cell division protein FtsX |
|
_____________152___________________________________________________206\n_____________|_____________________________________________________|\n5'-CUG...AUGCU_____U____C__G_____A___UCGCU________GGAUGA___________CGCCA...CGU-3'\n______________GACCC_GCAG_GU_GCCGG_UCA_____GACCGUGA______GGCCUGAUGAG\n______________|||||_|||:_||_|||||_|||_____:|||||||______:||||||||||\n______________CUGGG_CGUU_CA_CGGCC_AGU_____UUGGCACU______UCGGACUACUC\n____3'-UUUUUUU_____C____U________C___UU___________AA_______________CUCUA...GUU-5'\n_____________|_____________________________________________________|\n_____________145___________________________________________________99\n |
199 -- 205 |
100 -- 106 |
-59.0387 kcal/mol |
20.5976 kcal/mol |
20.2157 kcal/mol |
152 206@LB@ | |@LB@5'-CUG...AUGCU U C G A UCGCU GGAUGA CGCCA...CGU-3'@LB@ GACCC GCAG GU GCCGG UCA GACCGUGA GGCCUGAUGAG@LB@ ||||| |||: || ||||| ||| :||||||| :||||||||||@LB@ CUGGG CGUU CA CGGCC AGU UUGGCACU UCGGACUACUC@LB@ 3'-UUUUUUU C U C UU AA CUCUA...GUU-5'@LB@ | |@LB@ 145 99@LB@@LB@@LB@Energy -18.23 kcal/mol@LB@Hybridization Energy -59.0387 kcal/mol@LB@Unfolding Energy - mRNA 20.5976 kcal/mol@LB@Unfolding Energy - sRNA 20.2157 kcal/mol@LB@@LB@Position - mRNA 153 -- 205@LB@Position - sRNA 100 -- 144@LB@Position Seed - mRNA 199 -- 205@LB@Position Seed - sRNA 100 -- 106@LB@ |
