| 87 |
0.001101 |
0.05816 |
pa1343 |
N/A |
-16.83 |
0.002748 |
192 -- 238 |
44 -- 87 |
'Product name confidence: class 4 (Homologs of previously reported genes of unknown function or no similarity to any previously reported sequences)' |
|
_____________191______________________________________________239\n_____________|________________________________________________|\n5'-UCG...CGCCU_______CCA____CUA_____AUCC_____C_______C_UG_____CGCAC...CCC-3'\n______________GGAGUCC___UGCG____UCUC____UCAGC_UGCUGGC_G__CUCGC\n______________:||||||___||||____||||____|||||_|:|:|||_|__|||||\n______________UCUCAGG___ACGC____AGAG____AGUCG_AUGGCCG_C__GAGCG\n3'-UUU...AGACU_______CUG____ACCC_____________A_______A_UA_____CUGGU...GUU-5'\n_____________|________________________________________________|\n_____________88_______________________________________________43\n |
192 -- 198 |
81 -- 87 |
-49.5275 kcal/mol |
13.8321 kcal/mol |
18.8647 kcal/mol |
191 239@LB@ | |@LB@5'-UCG...CGCCU CCA CUA AUCC C C UG CGCAC...CCC-3'@LB@ GGAGUCC UGCG UCUC UCAGC UGCUGGC G CUCGC@LB@ :|||||| |||| |||| ||||| |:|:||| | |||||@LB@ UCUCAGG ACGC AGAG AGUCG AUGGCCG C GAGCG@LB@3'-UUU...AGACU CUG ACCC A A UA CUGGU...GUU-5'@LB@ | |@LB@ 88 43@LB@@LB@@LB@Energy -16.83 kcal/mol@LB@Hybridization Energy -49.5275 kcal/mol@LB@Unfolding Energy - mRNA 13.8321 kcal/mol@LB@Unfolding Energy - sRNA 18.8647 kcal/mol@LB@@LB@Position - mRNA 192 -- 238@LB@Position - sRNA 44 -- 87@LB@Position Seed - mRNA 192 -- 198@LB@Position Seed - sRNA 81 -- 87@LB@ |
| 88 |
0.001191 |
0.06151 |
pa1669 |
N/A |
-13.12 |
0.033789 |
66 -- 116 |
61 -- 119 |
'Product name confidence: class 4 (Homologs of previously reported genes of unknown function or no similarity to any previously reported sequences)' |
pa0077 |
_____________65___________________________________________________________117\n_____________|____________________________________________________________|\n5'-AGG...UGUUC___C____CU_________U__U___U__GG____________C__C_____________GAACA...UCG-3'\n______________ACC_UGGU__GCCUGGUGG_GA_GUA_UC__________GAUU_GC_UGGG_UUCUCGGC\n______________|||_||:|__|||||:||:_||_:||_||__________||:|_||_||||_:||||:||\n______________UGG_ACUA__CGGACUACU_CU_UAU_AG__________CUGA_CG_ACCC_GAGAGUCG\n3'-UUU...GUUUU___C____AU_________C__C___U__ACUUCUCAGG_______C____A________AAUGG...GUU-5'\n_____________|____________________________________________________________|\n_____________120__________________________________________________________60\n |
78 -- 84 |
101 -- 107 |
-47.9471 kcal/mol |
19.2589 kcal/mol |
15.5734 kcal/mol |
65 117@LB@ | |@LB@5'-AGG...UGUUC C CU U U U GG C C GAACA...UCG-3'@LB@ ACC UGGU GCCUGGUGG GA GUA UC GAUU GC UGGG UUCUCGGC@LB@ ||| ||:| |||||:||: || :|| || ||:| || |||| :||||:||@LB@ UGG ACUA CGGACUACU CU UAU AG CUGA CG ACCC GAGAGUCG@LB@3'-UUU...GUUUU C AU C C U ACUUCUCAGG C A AAUGG...GUU-5'@LB@ | |@LB@ 120 60@LB@@LB@@LB@Energy -13.12 kcal/mol@LB@Hybridization Energy -47.9471 kcal/mol@LB@Unfolding Energy - mRNA 19.2589 kcal/mol@LB@Unfolding Energy - sRNA 15.5734 kcal/mol@LB@@LB@Position - mRNA 66 -- 116@LB@Position - sRNA 61 -- 119@LB@Position Seed - mRNA 78 -- 84@LB@Position Seed - sRNA 101 -- 107@LB@ |
| 89 |
0.001191 |
0.06151 |
pa1669 |
N/A |
-13.12 |
0.033789 |
66 -- 116 |
61 -- 119 |
'Product name confidence: class 4 (Homologs of previously reported genes of unknown function or no similarity to any previously reported sequences)' |
pa0077 |
_____________65___________________________________________________________117\n_____________|____________________________________________________________|\n5'-AGG...UGUUC___C____CU_________U__U___U__GG____________C__C_____________GAACA...UCG-3'\n______________ACC_UGGU__GCCUGGUGG_GA_GUA_UC__________GAUU_GC_UGGG_UUCUCGGC\n______________|||_||:|__|||||:||:_||_:||_||__________||:|_||_||||_:||||:||\n______________UGG_ACUA__CGGACUACU_CU_UAU_AG__________CUGA_CG_ACCC_GAGAGUCG\n3'-UUU...GUUUU___C____AU_________C__C___U__ACUUCUCAGG_______C____A________AAUGG...GUU-5'\n_____________|____________________________________________________________|\n_____________120__________________________________________________________60\n |
78 -- 84 |
101 -- 107 |
-47.9471 kcal/mol |
19.2589 kcal/mol |
15.5734 kcal/mol |
65 117@LB@ | |@LB@5'-AGG...UGUUC C CU U U U GG C C GAACA...UCG-3'@LB@ ACC UGGU GCCUGGUGG GA GUA UC GAUU GC UGGG UUCUCGGC@LB@ ||| ||:| |||||:||: || :|| || ||:| || |||| :||||:||@LB@ UGG ACUA CGGACUACU CU UAU AG CUGA CG ACCC GAGAGUCG@LB@3'-UUU...GUUUU C AU C C U ACUUCUCAGG C A AAUGG...GUU-5'@LB@ | |@LB@ 120 60@LB@@LB@@LB@Energy -13.12 kcal/mol@LB@Hybridization Energy -47.9471 kcal/mol@LB@Unfolding Energy - mRNA 19.2589 kcal/mol@LB@Unfolding Energy - sRNA 15.5734 kcal/mol@LB@@LB@Position - mRNA 66 -- 116@LB@Position - sRNA 61 -- 119@LB@Position Seed - mRNA 78 -- 84@LB@Position Seed - sRNA 101 -- 107@LB@ |
| 91 |
0.001223 |
0.06177 |
pa3618 |
N/A |
-14.35 |
0.015718 |
191 -- 224 |
76 -- 123 |
'Product name confidence: class 4 (Homologs of previously reported genes of unknown function or no similarity to any previously reported sequences)' |
|
_____________190_______________________________________________225\n_____________|_________________________________________________|\n5'-GAG...CCCUG______A_____GAC_______________________________C__ACCGC...CCG-3'\n______________GAGAAC_GUGAU___CCUGAUG_______________GAGUCCGAC_UG\n______________:|:|||_|||||___|||||||_______________|||||||||_||\n______________UUUUUG_CACUA___GGACUAC_______________CUCAGGCUG_AC\n3'-UUU...CCCAG______G_____AUC_______UCCUCUAUUAGACUU____________GCACC...GUU-5'\n_____________|_________________________________________________|\n_____________124_______________________________________________75\n |
215 -- 221 |
78 -- 84 |
-35.9898 kcal/mol |
9.49172 kcal/mol |
12.1513 kcal/mol |
190 225@LB@ | |@LB@5'-GAG...CCCUG A GAC C ACCGC...CCG-3'@LB@ GAGAAC GUGAU CCUGAUG GAGUCCGAC UG@LB@ :|:||| ||||| ||||||| ||||||||| ||@LB@ UUUUUG CACUA GGACUAC CUCAGGCUG AC@LB@3'-UUU...CCCAG G AUC UCCUCUAUUAGACUU GCACC...GUU-5'@LB@ | |@LB@ 124 75@LB@@LB@@LB@Energy -14.35 kcal/mol@LB@Hybridization Energy -35.9898 kcal/mol@LB@Unfolding Energy - mRNA 9.49172 kcal/mol@LB@Unfolding Energy - sRNA 12.1513 kcal/mol@LB@@LB@Position - mRNA 191 -- 224@LB@Position - sRNA 76 -- 123@LB@Position Seed - mRNA 215 -- 221@LB@Position Seed - sRNA 78 -- 84@LB@ |
| 92 |
0.001266 |
0.06327 |
pa1307 |
N/A |
-13.15 |
0.033214 |
250 -- 278 |
41 -- 65 |
'Product name confidence: class 4 (Homologs of previously reported genes of unknown function or no similarity to any previously reported sequences)' |
|
_____________249___________________________279\n_____________|_____________________________|\n5'-UGC...CGUCU_______C_____A_____GCAG______GGCGG...GCG-3'\n______________UCAGCUU_ACCGG_CUGAU____CGCGGC\n______________|||||||_|||||_|||||____||||:|\n______________AGUCGAA_UGGCC_GACUA____GCGCUG\n3'-UUU...CAGAG___________________GA________GUCAA...GUU-5'\n_____________|_____________________________|\n_____________66____________________________40\n |
250 -- 256 |
59 -- 65 |
-34.6223 kcal/mol |
8.37343 kcal/mol |
13.1048 kcal/mol |
249 279@LB@ | |@LB@5'-UGC...CGUCU C A GCAG GGCGG...GCG-3'@LB@ UCAGCUU ACCGG CUGAU CGCGGC@LB@ ||||||| ||||| ||||| ||||:|@LB@ AGUCGAA UGGCC GACUA GCGCUG@LB@3'-UUU...CAGAG GA GUCAA...GUU-5'@LB@ | |@LB@ 66 40@LB@@LB@@LB@Energy -13.15 kcal/mol@LB@Hybridization Energy -34.6223 kcal/mol@LB@Unfolding Energy - mRNA 8.37343 kcal/mol@LB@Unfolding Energy - sRNA 13.1048 kcal/mol@LB@@LB@Position - mRNA 250 -- 278@LB@Position - sRNA 41 -- 65@LB@Position Seed - mRNA 250 -- 256@LB@Position Seed - sRNA 59 -- 65@LB@ |
| 93 |
0.001289 |
0.06355 |
pa4454 |
N/A |
-9.11 |
0.266760 |
170 -- 178 |
75 -- 83 |
'Product name confidence: class 4 (Homologs of previously reported genes of unknown function or no similarity to any previously reported sequences)' |
|
_____________169_______179\n_____________|_________|\n5'-CCG...UUCAU_________UUUGA...UGG-3'\n______________UCUGACUGC\n______________||:||||||\n______________AGGCUGACG\n3'-UUU...UUCUC_________CACCC...GUU-5'\n_____________|_________|\n_____________84________74\n |
172 -- 178 |
75 -- 81 |
-14.8179 kcal/mol |
1.6159 kcal/mol |
4.09544 kcal/mol |
169 179@LB@ | |@LB@5'-CCG...UUCAU UUUGA...UGG-3'@LB@ UCUGACUGC@LB@ ||:||||||@LB@ AGGCUGACG@LB@3'-UUU...UUCUC CACCC...GUU-5'@LB@ | |@LB@ 84 74@LB@@LB@@LB@Energy -9.11 kcal/mol@LB@Hybridization Energy -14.8179 kcal/mol@LB@Unfolding Energy - mRNA 1.6159 kcal/mol@LB@Unfolding Energy - sRNA 4.09544 kcal/mol@LB@@LB@Position - mRNA 170 -- 178@LB@Position - sRNA 75 -- 83@LB@Position Seed - mRNA 172 -- 178@LB@Position Seed - sRNA 75 -- 81@LB@ |
| 96 |
0.00134 |
0.06355 |
pa1641 |
N/A |
-15.72 |
0.006244 |
223 -- 294 |
34 -- 118 |
'Product name confidence: class 4 (Homologs of previously reported genes of unknown function or no similarity to any previously reported sequences)' |
|
_____________222______________________________________________________________________________________295\n_____________|________________________________________________________________________________________|\n5'-CGU...UCUGC____CC___C_____CCCU___________________________CC__CAAGACC__C______GA__A__G__C___________ACGCGG-3'\n______________CCGU__UUG_CCUGA____GG________________CCGGCUGCG__GG_______GC_UACCGG__GA_CU_CG_CGACCAGUUGG\n______________||||__||:_|||||____||________________|||:|||||__||_______||_||||||__||_||_||_||||||||||:\n______________GGCA__AAU_GGACU____CC________________GGCUGACGC__CC_______CG_AUGGCC__CU_GA_GC_GCUGGUCAACU\n3'-UUU...UUUUU____CU___C_____ACU___UCUAUUAGACUUCUCA_________AC__AGAGAGU__A______GA__A_________________CACUG...GUU-5'\n_____________|________________________________________________________________________________________|\n_____________119______________________________________________________________________________________33\n |
288 -- 294 |
34 -- 40 |
-66.8102 kcal/mol |
27.6932 kcal/mol |
23.4074 kcal/mol |
222 295@LB@ | |@LB@5'-CGU...UCUGC CC C CCCU CC CAAGACC C GA A G C ACGCGG-3'@LB@ CCGU UUG CCUGA GG CCGGCUGCG GG GC UACCGG GA CU CG CGACCAGUUGG@LB@ |||| ||: ||||| || |||:||||| || || |||||| || || || ||||||||||:@LB@ GGCA AAU GGACU CC GGCUGACGC CC CG AUGGCC CU GA GC GCUGGUCAACU@LB@3'-UUU...UUUUU CU C ACU UCUAUUAGACUUCUCA AC AGAGAGU A GA A CACUG...GUU-5'@LB@ | |@LB@ 119 33@LB@@LB@@LB@Energy -15.72 kcal/mol@LB@Hybridization Energy -66.8102 kcal/mol@LB@Unfolding Energy - mRNA 27.6932 kcal/mol@LB@Unfolding Energy - sRNA 23.4074 kcal/mol@LB@@LB@Position - mRNA 223 -- 294@LB@Position - sRNA 34 -- 118@LB@Position Seed - mRNA 288 -- 294@LB@Position Seed - sRNA 34 -- 40@LB@ |
| 102 |
0.001679 |
0.07499 |
pa2657 |
N/A |
-10.65 |
0.130856 |
243 -- 261 |
104 -- 121 |
two-component response regulator |
|
_____________242_________________262\n_____________|___________________|\n5'-GGU...CCGAC______A___CC_______CCCGC...GCC-3'\n______________GAACUG_UGG__AGCCUGA\n______________:|||:|_||:__|||||||\n______________UUUGGC_ACU__UCGGACU\n3'-UUU...CAGUU__________AA_______ACUCC...GUU-5'\n_____________|___________________|\n_____________122_________________103\n |
255 -- 261 |
104 -- 110 |
-18.2987 kcal/mol |
5.4095 kcal/mol |
2.24203 kcal/mol |
242 262@LB@ | |@LB@5'-GGU...CCGAC A CC CCCGC...GCC-3'@LB@ GAACUG UGG AGCCUGA@LB@ :|||:| ||: |||||||@LB@ UUUGGC ACU UCGGACU@LB@3'-UUU...CAGUU AA ACUCC...GUU-5'@LB@ | |@LB@ 122 103@LB@@LB@@LB@Energy -10.65 kcal/mol@LB@Hybridization Energy -18.2987 kcal/mol@LB@Unfolding Energy - mRNA 5.4095 kcal/mol@LB@Unfolding Energy - sRNA 2.24203 kcal/mol@LB@@LB@Position - mRNA 243 -- 261@LB@Position - sRNA 104 -- 121@LB@Position Seed - mRNA 255 -- 261@LB@Position Seed - sRNA 104 -- 110@LB@ |
| 104 |
0.00171 |
0.07531 |
pa4333 |
N/A |
-8.52 |
0.338548 |
151 -- 157 |
40 -- 46 |
fumarase |
|
_____________150_____158\n_____________|_______|\n5'-UAG...GGCUC_______CUGCC...AUG-3'\n______________CGUGACC\n______________||:||||\n______________GCGCUGG\n3'-UUU...CUAGA_______UCAAC...GUU-5'\n_____________|_______|\n_____________47______39\n |
151 -- 157 |
40 -- 46 |
-12.3245 kcal/mol |
0.149051 kcal/mol |
3.65718 kcal/mol |
150 158@LB@ | |@LB@5'-UAG...GGCUC CUGCC...AUG-3'@LB@ CGUGACC@LB@ ||:||||@LB@ GCGCUGG@LB@3'-UUU...CUAGA UCAAC...GUU-5'@LB@ | |@LB@ 47 39@LB@@LB@@LB@Energy -8.52 kcal/mol@LB@Hybridization Energy -12.3245 kcal/mol@LB@Unfolding Energy - mRNA 0.149051 kcal/mol@LB@Unfolding Energy - sRNA 3.65718 kcal/mol@LB@@LB@Position - mRNA 151 -- 157@LB@Position - sRNA 40 -- 46@LB@Position Seed - mRNA 151 -- 157@LB@Position Seed - sRNA 40 -- 46@LB@ |
| 105 |
0.00174 |
0.07531 |
pa4182 |
N/A |
-13.56 |
0.025913 |
222 -- 265 |
39 -- 89 |
'Product name confidence: class 4 (Homologs of previously reported genes of unknown function or no similarity to any previously reported sequences)' |
|
_____________221__________________________________________________266\n_____________|____________________________________________________|\n5'-ACG...AUUUC____________C___CA____________GCA__C__________G_____UCCGC...CGG-3'\n______________GAAGAGUCCGAC__CG__GG_C_____GCU___CG_GCUGAUC_CG_GACUA\n______________||||||||||||__||__||_|_____|||___||_|||||||_||_|||:|\n______________CUUCUCAGGCUG__GC__CC_G_____CGA___GC_CGACUAG_GC_CUGGU\n3'-UUU...UUAGA____________AC__AC__A_AGAGU___AUG__________A__G_____CAACU...GUU-5'\n_____________|____________________________________________________|\n_____________90___________________________________________________38\n |
251 -- 257 |
48 -- 54 |
-52.115 kcal/mol |
19.5257 kcal/mol |
19.0319 kcal/mol |
221 266@LB@ | |@LB@5'-ACG...AUUUC C CA GCA C G UCCGC...CGG-3'@LB@ GAAGAGUCCGAC CG GG C GCU CG GCUGAUC CG GACUA@LB@ |||||||||||| || || | ||| || ||||||| || |||:|@LB@ CUUCUCAGGCUG GC CC G CGA GC CGACUAG GC CUGGU@LB@3'-UUU...UUAGA AC AC A AGAGU AUG A G CAACU...GUU-5'@LB@ | |@LB@ 90 38@LB@@LB@@LB@Energy -13.56 kcal/mol@LB@Hybridization Energy -52.115 kcal/mol@LB@Unfolding Energy - mRNA 19.5257 kcal/mol@LB@Unfolding Energy - sRNA 19.0319 kcal/mol@LB@@LB@Position - mRNA 222 -- 265@LB@Position - sRNA 39 -- 89@LB@Position Seed - mRNA 251 -- 257@LB@Position Seed - sRNA 48 -- 54@LB@ |
