| 149 |
0.003414 |
0.1053 |
pa3109 |
N/A |
-16.06 |
0.004890 |
59 -- 72 |
33 -- 46 |
'Product name confidence: class 4 (Homologs of previously reported genes of unknown function or no similarity to any previously reported sequences)' |
|
_____________58_____________73\n_____________|______________|\n5'-CGG...GCCUG______________CAAGC...UGC-3'\n______________CGCGACCAGUUGAG\n______________||||||||||||||\n______________GCGCUGGUCAACUC\n3'-UUU...CUAGA______________ACUGU...GUU-5'\n_____________|______________|\n_____________47_____________32\n |
66 -- 72 |
33 -- 39 |
-27.0742 kcal/mol |
7.33982 kcal/mol |
3.68029 kcal/mol |
58 73@LB@ | |@LB@5'-CGG...GCCUG CAAGC...UGC-3'@LB@ CGCGACCAGUUGAG@LB@ ||||||||||||||@LB@ GCGCUGGUCAACUC@LB@3'-UUU...CUAGA ACUGU...GUU-5'@LB@ | |@LB@ 47 32@LB@@LB@@LB@Energy -16.06 kcal/mol@LB@Hybridization Energy -27.0742 kcal/mol@LB@Unfolding Energy - mRNA 7.33982 kcal/mol@LB@Unfolding Energy - sRNA 3.68029 kcal/mol@LB@@LB@Position - mRNA 59 -- 72@LB@Position - sRNA 33 -- 46@LB@Position Seed - mRNA 66 -- 72@LB@Position Seed - sRNA 33 -- 39@LB@ |
| 155 |
0.003654 |
0.1083 |
pa1551 |
N/A |
-14.46 |
0.014645 |
185 -- 205 |
100 -- 119 |
ferredoxin |
|
_____________184___________________206\n_____________|_____________________|\n5'-ACC...CCACU________AC__A________CAAAC...GGG-3'\n______________GCCGUGGU__GC_CUGAUGAG\n______________:|||||:|__||_||||||||\n______________UGGCACUA__CG_GACUACUC\n3'-UUU...GUUUU________AU___________CUCUA...GUU-5'\n_____________|_____________________|\n_____________120___________________99\n |
199 -- 205 |
100 -- 106 |
-27.0785 kcal/mol |
10.3705 kcal/mol |
2.24903 kcal/mol |
184 206@LB@ | |@LB@5'-ACC...CCACU AC A CAAAC...GGG-3'@LB@ GCCGUGGU GC CUGAUGAG@LB@ :|||||:| || ||||||||@LB@ UGGCACUA CG GACUACUC@LB@3'-UUU...GUUUU AU CUCUA...GUU-5'@LB@ | |@LB@ 120 99@LB@@LB@@LB@Energy -14.46 kcal/mol@LB@Hybridization Energy -27.0785 kcal/mol@LB@Unfolding Energy - mRNA 10.3705 kcal/mol@LB@Unfolding Energy - sRNA 2.24903 kcal/mol@LB@@LB@Position - mRNA 185 -- 205@LB@Position - sRNA 100 -- 119@LB@Position Seed - mRNA 199 -- 205@LB@Position Seed - sRNA 100 -- 106@LB@ |
| 157 |
0.003825 |
0.112 |
pa0687 |
N/A |
-10.29 |
0.156397 |
189 -- 203 |
102 -- 118 |
type II secretion system protein |
pa3102 |
_____________188_______________204\n_____________|_________________|\n5'-AGC...GUGAC___G__C__________CAGAC...GCG-3'\n______________CCG_GA___GCCUGAUG\n______________|||_||___||||||||\n______________GGC_CU___CGGACUAC\n3'-UUU...UUUUU___A__AAU________UCCUC...GUU-5'\n_____________|_________________|\n_____________119_______________101\n |
197 -- 203 |
102 -- 108 |
-18.3707 kcal/mol |
5.84542 kcal/mol |
2.2426 kcal/mol |
188 204@LB@ | |@LB@5'-AGC...GUGAC G C CAGAC...GCG-3'@LB@ CCG GA GCCUGAUG@LB@ ||| || ||||||||@LB@ GGC CU CGGACUAC@LB@3'-UUU...UUUUU A AAU UCCUC...GUU-5'@LB@ | |@LB@ 119 101@LB@@LB@@LB@Energy -10.29 kcal/mol@LB@Hybridization Energy -18.3707 kcal/mol@LB@Unfolding Energy - mRNA 5.84542 kcal/mol@LB@Unfolding Energy - sRNA 2.2426 kcal/mol@LB@@LB@Position - mRNA 189 -- 203@LB@Position - sRNA 102 -- 118@LB@Position Seed - mRNA 197 -- 203@LB@Position Seed - sRNA 102 -- 108@LB@ |
| 158 |
0.003862 |
0.1123 |
pa4780 |
N/A |
-10.69 |
0.128339 |
184 -- 207 |
98 -- 122 |
'Product name confidence: class 4 (Homologs of previously reported genes of unknown function or no similarity to any previously reported sequences)' |
|
_____________183________________________208\n_____________|__________________________|\n5'-AGG...CCCGA_______C_______A_C_____A__CACCC...UGG-3'\n______________GGAACCG_G__UAGC_C_GAUGA_GA\n______________::|||||_|__||||_|_|||||_||\n______________UUUUGGC_C__AUCG_G_CUACU_CU\n3'-UUU...CCAGU_______A_UA______A_____C__CUAUU...GUU-5'\n_____________|__________________________|\n_____________123________________________97\n |
184 -- 190 |
116 -- 122 |
-18.2775 kcal/mol |
5.33909 kcal/mol |
2.25226 kcal/mol |
183 208@LB@ | |@LB@5'-AGG...CCCGA C A C A CACCC...UGG-3'@LB@ GGAACCG G UAGC C GAUGA GA@LB@ ::||||| | |||| | ||||| ||@LB@ UUUUGGC C AUCG G CUACU CU@LB@3'-UUU...CCAGU A UA A C CUAUU...GUU-5'@LB@ | |@LB@ 123 97@LB@@LB@@LB@Energy -10.69 kcal/mol@LB@Hybridization Energy -18.2775 kcal/mol@LB@Unfolding Energy - mRNA 5.33909 kcal/mol@LB@Unfolding Energy - sRNA 2.25226 kcal/mol@LB@@LB@Position - mRNA 184 -- 207@LB@Position - sRNA 98 -- 122@LB@Position Seed - mRNA 184 -- 190@LB@Position Seed - sRNA 116 -- 122@LB@ |
| 159 |
0.003984 |
0.115 |
pa2627 |
N/A |
-8.37 |
0.359084 |
22 -- 39 |
38 -- 59 |
high frequency lysogenization protein HflD |
|
_____________21_____________________40\n_____________|______________________|\n5'-CGC...UGCGC_______A______________GACUG...CCC-3'\n______________UACCGGC_GA____GCGACCAG\n______________|||||||_||____||||||||\n______________AUGGCCG_CU____CGCUGGUC\n3'-UUU...GUCGA_______A__AGAG________AACUC...GUU-5'\n_____________|______________________|\n_____________60_____________________37\n |
33 -- 39 |
38 -- 44 |
-28.3931 kcal/mol |
8.63241 kcal/mol |
11.3994 kcal/mol |
21 40@LB@ | |@LB@5'-CGC...UGCGC A GACUG...CCC-3'@LB@ UACCGGC GA GCGACCAG@LB@ ||||||| || ||||||||@LB@ AUGGCCG CU CGCUGGUC@LB@3'-UUU...GUCGA A AGAG AACUC...GUU-5'@LB@ | |@LB@ 60 37@LB@@LB@@LB@Energy -8.37 kcal/mol@LB@Hybridization Energy -28.3931 kcal/mol@LB@Unfolding Energy - mRNA 8.63241 kcal/mol@LB@Unfolding Energy - sRNA 11.3994 kcal/mol@LB@@LB@Position - mRNA 22 -- 39@LB@Position - sRNA 38 -- 59@LB@Position Seed - mRNA 33 -- 39@LB@Position Seed - sRNA 38 -- 44@LB@ |
| 162 |
0.00407 |
0.1155 |
pa4993 |
N/A |
-9.83 |
0.193366 |
13 -- 32 |
104 -- 121 |
'Product name confidence: class 4 (Homologs of previously reported genes of unknown function or no similarity to any previously reported sequences)' |
|
_____________12___________________33\n_____________|____________________|\n5'-CGA...CGCGC_____C___AAAA_______ACCAU...GCC-3'\n______________AAGCC_UGA____GGCCUGA\n______________||:||_|||____:||||||\n______________UUUGG_ACU____UCGGACU\n3'-UUU...CAGUU_____C___AA_________ACUCC...GUU-5'\n_____________|____________________|\n_____________122__________________103\n |
26 -- 32 |
104 -- 110 |
-17.5213 kcal/mol |
5.44748 kcal/mol |
2.24203 kcal/mol |
12 33@LB@ | |@LB@5'-CGA...CGCGC C AAAA ACCAU...GCC-3'@LB@ AAGCC UGA GGCCUGA@LB@ ||:|| ||| :||||||@LB@ UUUGG ACU UCGGACU@LB@3'-UUU...CAGUU C AA ACUCC...GUU-5'@LB@ | |@LB@ 122 103@LB@@LB@@LB@Energy -9.83 kcal/mol@LB@Hybridization Energy -17.5213 kcal/mol@LB@Unfolding Energy - mRNA 5.44748 kcal/mol@LB@Unfolding Energy - sRNA 2.24203 kcal/mol@LB@@LB@Position - mRNA 13 -- 32@LB@Position - sRNA 104 -- 121@LB@Position Seed - mRNA 26 -- 32@LB@Position Seed - sRNA 104 -- 110@LB@ |
| 163 |
0.004151 |
0.1159 |
pa3263 |
N/A |
-13.17 |
0.032863 |
133 -- 150 |
104 -- 121 |
recombination associated protein RdgC |
|
_____________132________________151\n_____________|__________________|\n5'-GUA...GCGAC______G___________GCCGC...CCU-3'\n______________GGACCG_GGUUGGCCUGA\n______________::||||_|:||:||||||\n______________UUUGGC_CUAAUCGGACU\n3'-UUU...CAGUU______A___________ACUCC...GUU-5'\n_____________|__________________|\n_____________122________________103\n |
144 -- 150 |
104 -- 110 |
-25.1519 kcal/mol |
9.74439 kcal/mol |
2.24203 kcal/mol |
132 151@LB@ | |@LB@5'-GUA...GCGAC G GCCGC...CCU-3'@LB@ GGACCG GGUUGGCCUGA@LB@ ::|||| |:||:||||||@LB@ UUUGGC CUAAUCGGACU@LB@3'-UUU...CAGUU A ACUCC...GUU-5'@LB@ | |@LB@ 122 103@LB@@LB@@LB@Energy -13.17 kcal/mol@LB@Hybridization Energy -25.1519 kcal/mol@LB@Unfolding Energy - mRNA 9.74439 kcal/mol@LB@Unfolding Energy - sRNA 2.24203 kcal/mol@LB@@LB@Position - mRNA 133 -- 150@LB@Position - sRNA 104 -- 121@LB@Position Seed - mRNA 144 -- 150@LB@Position Seed - sRNA 104 -- 110@LB@ |
| 164 |
0.004161 |
0.1159 |
pa4420 |
N/A |
-11.64 |
0.078545 |
165 -- 187 |
40 -- 62 |
S-adenosyl-methyltransferase MraW |
|
_____________164______________________188\n_____________|________________________|\n5'-GAC...GGUGG_________AC__A__A_______UGAUC...GAA-3'\n______________GC_UGCCGG__GA_CU_CGCGACC\n______________||_|:||||__||_||_|||||||\n______________CG_AUGGCC__CU_GA_GCGCUGG\n3'-UUU...AGAGU__A______GA__A__________UCAAC...GUU-5'\n_____________|________________________|\n_____________63_______________________39\n |
181 -- 187 |
40 -- 46 |
-28.7872 kcal/mol |
5.30942 kcal/mol |
11.8411 kcal/mol |
164 188@LB@ | |@LB@5'-GAC...GGUGG AC A A UGAUC...GAA-3'@LB@ GC UGCCGG GA CU CGCGACC@LB@ || |:|||| || || |||||||@LB@ CG AUGGCC CU GA GCGCUGG@LB@3'-UUU...AGAGU A GA A UCAAC...GUU-5'@LB@ | |@LB@ 63 39@LB@@LB@@LB@Energy -11.64 kcal/mol@LB@Hybridization Energy -28.7872 kcal/mol@LB@Unfolding Energy - mRNA 5.30942 kcal/mol@LB@Unfolding Energy - sRNA 11.8411 kcal/mol@LB@@LB@Position - mRNA 165 -- 187@LB@Position - sRNA 40 -- 62@LB@Position Seed - mRNA 181 -- 187@LB@Position Seed - sRNA 40 -- 46@LB@ |
| 165 |
0.004162 |
0.1159 |
pa1850 |
N/A |
-12.78 |
0.041348 |
242 -- 255 |
104 -- 117 |
transcriptional regulator |
|
_____________241____________256\n_____________|______________|\n5'-AUA...CCCGA______G_______ACGUG...AAC-3'\n______________CGUGAU_AGCCUGG\n______________||||||_||||||:\n______________GCACUA_UCGGACU\n3'-UUU...UUUUG______A_______ACUCC...GUU-5'\n_____________|______________|\n_____________118____________103\n |
249 -- 255 |
104 -- 110 |
-19.8167 kcal/mol |
4.81117 kcal/mol |
2.2292 kcal/mol |
241 256@LB@ | |@LB@5'-AUA...CCCGA G ACGUG...AAC-3'@LB@ CGUGAU AGCCUGG@LB@ |||||| ||||||:@LB@ GCACUA UCGGACU@LB@3'-UUU...UUUUG A ACUCC...GUU-5'@LB@ | |@LB@ 118 103@LB@@LB@@LB@Energy -12.78 kcal/mol@LB@Hybridization Energy -19.8167 kcal/mol@LB@Unfolding Energy - mRNA 4.81117 kcal/mol@LB@Unfolding Energy - sRNA 2.2292 kcal/mol@LB@@LB@Position - mRNA 242 -- 255@LB@Position - sRNA 104 -- 117@LB@Position Seed - mRNA 249 -- 255@LB@Position Seed - sRNA 104 -- 110@LB@ |
| 167 |
0.004312 |
0.117 |
pa2583 |
N/A |
-13.54 |
0.026172 |
146 -- 169 |
69 -- 89 |
sensor/response regulator hybrid protein |
pa3044 pa3946 pa4982 pa1611 |
_____________145______________________170\n_____________|________________________|\n5'-CCU...UGCCA___C____G_____AG________UCCUG...UGA-3'\n______________GAG_GAGU_UCGAC__GCGUGGGU\n______________||:_||||_:||||__||||||||\n______________CUU_CUCA_GGCUG__CGCACCCA\n3'-UUU...UUAGA______________A_________GAGAG...GUU-5'\n_____________|________________________|\n_____________90_______________________68\n |
163 -- 169 |
69 -- 75 |
-28.6669 kcal/mol |
9.05998 kcal/mol |
6.06593 kcal/mol |
145 170@LB@ | |@LB@5'-CCU...UGCCA C G AG UCCUG...UGA-3'@LB@ GAG GAGU UCGAC GCGUGGGU@LB@ ||: |||| :|||| ||||||||@LB@ CUU CUCA GGCUG CGCACCCA@LB@3'-UUU...UUAGA A GAGAG...GUU-5'@LB@ | |@LB@ 90 68@LB@@LB@@LB@Energy -13.54 kcal/mol@LB@Hybridization Energy -28.6669 kcal/mol@LB@Unfolding Energy - mRNA 9.05998 kcal/mol@LB@Unfolding Energy - sRNA 6.06593 kcal/mol@LB@@LB@Position - mRNA 146 -- 169@LB@Position - sRNA 69 -- 89@LB@Position Seed - mRNA 163 -- 169@LB@Position Seed - sRNA 69 -- 75@LB@ |
