| 95 |
0.001333 |
0.06355 |
pa5380 |
gbdR |
-10.99 |
0.110367 |
154 -- 228 |
78 -- 123 |
protein GbdR |
|
_____________153_________________________________________________________________________229\n_____________|___________________________________________________________________________|\n5'-UGC...AUAAA_______UC____GA______CUUGCUCAGC___________CACCCA___CCACGUACGCGCCC_______C__CACAG...CGG-3'\n______________AAAAGCC__GUGA__GGCCUG__________GUGAGGAGAUA______UGA______________GGAGUCC_AC\n______________||||:||__||||__:|||||__________:||||||||||______|||______________:||||||_||\n______________UUUUUGG__CACU__UCGGAC__________UACUCCUCUAU______ACU______________UCUCAGG_UG\n3'-UUU...CCCAG_____________AA___________________________UAG___________________________C__ACGCA...GUU-5'\n_____________|___________________________________________________________________________|\n_____________124_________________________________________________________________________77\n |
219 -- 225 |
81 -- 87 |
-45.4439 kcal/mol |
22.3385 kcal/mol |
12.1238 kcal/mol |
153 229@LB@ | |@LB@5'-UGC...AUAAA UC GA CUUGCUCAGC CACCCA CCACGUACGCGCCC C CACAG...CGG-3'@LB@ AAAAGCC GUGA GGCCUG GUGAGGAGAUA UGA GGAGUCC AC@LB@ ||||:|| |||| :||||| :|||||||||| ||| :|||||| ||@LB@ UUUUUGG CACU UCGGAC UACUCCUCUAU ACU UCUCAGG UG@LB@3'-UUU...CCCAG AA UAG C ACGCA...GUU-5'@LB@ | |@LB@ 124 77@LB@@LB@@LB@Energy -10.99 kcal/mol@LB@Hybridization Energy -45.4439 kcal/mol@LB@Unfolding Energy - mRNA 22.3385 kcal/mol@LB@Unfolding Energy - sRNA 12.1238 kcal/mol@LB@@LB@Position - mRNA 154 -- 228@LB@Position - sRNA 78 -- 123@LB@Position Seed - mRNA 219 -- 225@LB@Position Seed - sRNA 81 -- 87@LB@ |
| 134 |
0.002678 |
0.0912 |
pa1421 |
gbuA |
-12.45 |
0.050008 |
184 -- 195 |
107 -- 120 |
guanidinobutyrase |
|
_____________183____________196\n_____________|______________|\n5'-UCC...ACAAC______________ACCCC...CCG-3'\n______________GACCGUGA__GGCC\n______________:|||||||__:|||\n______________UUGGCACU__UCGG\n3'-UUU...AGUUU________AA____ACUAC...GUU-5'\n_____________|______________|\n_____________121____________106\n |
185 -- 191 |
113 -- 119 |
-18.3112 kcal/mol |
3.63401 kcal/mol |
2.2351 kcal/mol |
183 196@LB@ | |@LB@5'-UCC...ACAAC ACCCC...CCG-3'@LB@ GACCGUGA GGCC@LB@ :||||||| :|||@LB@ UUGGCACU UCGG@LB@3'-UUU...AGUUU AA ACUAC...GUU-5'@LB@ | |@LB@ 121 106@LB@@LB@@LB@Energy -12.45 kcal/mol@LB@Hybridization Energy -18.3112 kcal/mol@LB@Unfolding Energy - mRNA 3.63401 kcal/mol@LB@Unfolding Energy - sRNA 2.2351 kcal/mol@LB@@LB@Position - mRNA 184 -- 195@LB@Position - sRNA 107 -- 120@LB@Position Seed - mRNA 185 -- 191@LB@Position Seed - sRNA 113 -- 119@LB@ |
| 54 |
0.000431 |
0.03637 |
pa5355 |
glcD |
-9.87 |
0.190611 |
164 -- 178 |
41 -- 54 |
glycolate oxidase subunit GlcD |
|
_____________163_____________179\n_____________|_______________|\n5'-GCU...CGCUU_______C__C____AACCA...AAC-3'\n______________GCUGAUC_CG_CGAC\n______________|||||||_||_||||\n______________CGACUAG_GC_GCUG\n3'-UUU...AUGGC_______A_______GUCAA...GUU-5'\n_____________|_______________|\n_____________55______________40\n |
164 -- 170 |
48 -- 54 |
-19.1225 kcal/mol |
2.27094 kcal/mol |
6.98983 kcal/mol |
163 179@LB@ | |@LB@5'-GCU...CGCUU C C AACCA...AAC-3'@LB@ GCUGAUC CG CGAC@LB@ ||||||| || ||||@LB@ CGACUAG GC GCUG@LB@3'-UUU...AUGGC A GUCAA...GUU-5'@LB@ | |@LB@ 55 40@LB@@LB@@LB@Energy -9.87 kcal/mol@LB@Hybridization Energy -19.1225 kcal/mol@LB@Unfolding Energy - mRNA 2.27094 kcal/mol@LB@Unfolding Energy - sRNA 6.98983 kcal/mol@LB@@LB@Position - mRNA 164 -- 178@LB@Position - sRNA 41 -- 54@LB@Position Seed - mRNA 164 -- 170@LB@Position Seed - sRNA 48 -- 54@LB@ |
| 82 |
0.000993 |
0.05566 |
pa5549 |
glmS |
-14.85 |
0.011343 |
179 -- 208 |
71 -- 110 |
glucosamine--fructose-6-phosphate aminotransferase |
|
_____________178______________________________________209\n_____________|________________________________________|\n5'-CCG...GUCGA_______A__________________CC__A_________AAUCG...GCG-3'\n______________GGCCUGA__AGGAGA_______AAGA__CC___UGUGUGG\n______________:||||||__||||||_______||||__||___||:||||\n______________UCGGACU__UCCUCU_______UUCU__GG___ACGCACC\n3'-UUU...ACUAA_______AC______AUUAGAC____CA__CUG_______CAGAG...GUU-5'\n_____________|________________________________________|\n_____________111______________________________________70\n |
202 -- 208 |
71 -- 77 |
-33.9361 kcal/mol |
6.17828 kcal/mol |
12.9138 kcal/mol |
178 209@LB@ | |@LB@5'-CCG...GUCGA A CC A AAUCG...GCG-3'@LB@ GGCCUGA AGGAGA AAGA CC UGUGUGG@LB@ :|||||| |||||| |||| || ||:||||@LB@ UCGGACU UCCUCU UUCU GG ACGCACC@LB@3'-UUU...ACUAA AC AUUAGAC CA CUG CAGAG...GUU-5'@LB@ | |@LB@ 111 70@LB@@LB@@LB@Energy -14.85 kcal/mol@LB@Hybridization Energy -33.9361 kcal/mol@LB@Unfolding Energy - mRNA 6.17828 kcal/mol@LB@Unfolding Energy - sRNA 12.9138 kcal/mol@LB@@LB@Position - mRNA 179 -- 208@LB@Position - sRNA 71 -- 110@LB@Position Seed - mRNA 202 -- 208@LB@Position Seed - sRNA 71 -- 77@LB@ |
| 18 |
3.753e-05 |
0.009449 |
pa5036 |
gltB |
-9.24 |
0.251750 |
240 -- 259 |
103 -- 120 |
glutamate synthase subunit alpha |
|
_____________239__________________260\n_____________|____________________|\n5'-GAA...AGGAU_____CG__U__________CGCCC...AAA-3'\n______________AACUG__GA_UUGGCCUGAU\n______________|||:|__||_||:|||||||\n______________UUGGC__CU_AAUCGGACUA\n3'-UUU...AGUUU_____A______________CUCCU...GUU-5'\n_____________|____________________|\n_____________121__________________102\n |
253 -- 259 |
103 -- 109 |
-18.8705 kcal/mol |
7.38825 kcal/mol |
2.24268 kcal/mol |
239 260@LB@ | |@LB@5'-GAA...AGGAU CG U CGCCC...AAA-3'@LB@ AACUG GA UUGGCCUGAU@LB@ |||:| || ||:|||||||@LB@ UUGGC CU AAUCGGACUA@LB@3'-UUU...AGUUU A CUCCU...GUU-5'@LB@ | |@LB@ 121 102@LB@@LB@@LB@Energy -9.24 kcal/mol@LB@Hybridization Energy -18.8705 kcal/mol@LB@Unfolding Energy - mRNA 7.38825 kcal/mol@LB@Unfolding Energy - sRNA 2.24268 kcal/mol@LB@@LB@Position - mRNA 240 -- 259@LB@Position - sRNA 103 -- 120@LB@Position Seed - mRNA 253 -- 259@LB@Position Seed - sRNA 103 -- 109@LB@ |
| 24 |
5.771e-05 |
0.01105 |
pa5035 |
gltD |
-10.90 |
0.115442 |
181 -- 216 |
79 -- 110 |
glutamate synthase subunit beta |
|
_____________180___________________________________217\n_____________|_____________________________________|\n5'-UCG...CCCGA___UG________UUUC____U_______C_______AUUCC...AGC-3'\n______________AGU__UGAUGAGG____GAUA_GUCUGAA__GUCUGA\n______________||:__||||||||____||||_:||||||__|||:||\n______________UCG__ACUACUCC____CUAU_UAGACUU__CAGGCU\n3'-UUU...ACUAA___G_________U_______________CU______GACGC...GUU-5'\n_____________|_____________________________________|\n_____________111___________________________________78\n |
203 -- 209 |
87 -- 93 |
-30.6009 kcal/mol |
8.30781 kcal/mol |
11.3934 kcal/mol |
180 217@LB@ | |@LB@5'-UCG...CCCGA UG UUUC U C AUUCC...AGC-3'@LB@ AGU UGAUGAGG GAUA GUCUGAA GUCUGA@LB@ ||: |||||||| |||| :|||||| |||:||@LB@ UCG ACUACUCC CUAU UAGACUU CAGGCU@LB@3'-UUU...ACUAA G U CU GACGC...GUU-5'@LB@ | |@LB@ 111 78@LB@@LB@@LB@Energy -10.90 kcal/mol@LB@Hybridization Energy -30.6009 kcal/mol@LB@Unfolding Energy - mRNA 8.30781 kcal/mol@LB@Unfolding Energy - sRNA 11.3934 kcal/mol@LB@@LB@Position - mRNA 181 -- 216@LB@Position - sRNA 79 -- 110@LB@Position Seed - mRNA 203 -- 209@LB@Position Seed - sRNA 87 -- 93@LB@ |
| 161 |
0.004027 |
0.115 |
pa0009 |
glyQ |
-13.96 |
0.020216 |
43 -- 68 |
95 -- 119 |
glycine--tRNA ligase subunit alpha |
|
_____________42_________________________69\n_____________|__________________________|\n5'-GAA...UCCUC________A____A__UA________CGUCG...ACG-3'\n______________AUCGUGGU_GGCC_UG__GAGGGGAU\n______________|:||||:|_:|||_||__||||:|||\n______________UGGCACUA_UCGG_AC__CUCCUCUA\n3'-UUU...GUUUU________A_______UA________UUAGA...GUU-5'\n_____________|__________________________|\n_____________120________________________94\n |
62 -- 68 |
95 -- 101 |
-28.6932 kcal/mol |
8.89956 kcal/mol |
5.83995 kcal/mol |
42 69@LB@ | |@LB@5'-GAA...UCCUC A A UA CGUCG...ACG-3'@LB@ AUCGUGGU GGCC UG GAGGGGAU@LB@ |:||||:| :||| || ||||:|||@LB@ UGGCACUA UCGG AC CUCCUCUA@LB@3'-UUU...GUUUU A UA UUAGA...GUU-5'@LB@ | |@LB@ 120 94@LB@@LB@@LB@Energy -13.96 kcal/mol@LB@Hybridization Energy -28.6932 kcal/mol@LB@Unfolding Energy - mRNA 8.89956 kcal/mol@LB@Unfolding Energy - sRNA 5.83995 kcal/mol@LB@@LB@Position - mRNA 43 -- 68@LB@Position - sRNA 95 -- 119@LB@Position Seed - mRNA 62 -- 68@LB@Position Seed - sRNA 95 -- 101@LB@ |
| 118 |
0.002082 |
0.07999 |
pa5066 |
hisI |
-12.42 |
0.050876 |
194 -- 221 |
100 -- 123 |
phosphoribosyl-AMP cyclohydrolase |
|
_____________193__________________________222\n_____________|____________________________|\n5'-CGA...CGUGG_______A___AAGAC_____G______AUUCA...GGA-3'\n______________AAAGACC_UGA_____UGGCU_GAUGAG\n______________|||:|||_|||_____|:||:_||||||\n______________UUUUUGG_ACU_____AUCGG_CUACUC\n3'-UUU...CCCAG_______C___A_________A______CUCUA...GUU-5'\n_____________|____________________________|\n_____________124__________________________99\n |
194 -- 200 |
117 -- 123 |
-21.0853 kcal/mol |
6.41847 kcal/mol |
2.24995 kcal/mol |
193 222@LB@ | |@LB@5'-CGA...CGUGG A AAGAC G AUUCA...GGA-3'@LB@ AAAGACC UGA UGGCU GAUGAG@LB@ |||:||| ||| |:||: ||||||@LB@ UUUUUGG ACU AUCGG CUACUC@LB@3'-UUU...CCCAG C A A CUCUA...GUU-5'@LB@ | |@LB@ 124 99@LB@@LB@@LB@Energy -12.42 kcal/mol@LB@Hybridization Energy -21.0853 kcal/mol@LB@Unfolding Energy - mRNA 6.41847 kcal/mol@LB@Unfolding Energy - sRNA 2.24995 kcal/mol@LB@@LB@Position - mRNA 194 -- 221@LB@Position - sRNA 100 -- 123@LB@Position Seed - mRNA 194 -- 200@LB@Position Seed - sRNA 117 -- 123@LB@ |
| 160 |
0.004014 |
0.115 |
pa3736 |
hom |
-12.18 |
0.058138 |
179 -- 203 |
72 -- 98 |
homoserine dehydrogenase |
|
_____________178_________________________204\n_____________|___________________________|\n5'-GAA...GUCGU______GA__________CA_______AAACC...CCG-3'\n______________AGGUGA__UGGGGAGUUC____GCGUG\n______________||:|:|__||::||||:|____|||||\n______________UCUAUU__ACUUCUCAGG____CGCAC\n3'-UUU...ACUCC______AG__________CUGA_____CCAGA...GUU-5'\n_____________|___________________________|\n_____________99__________________________71\n |
190 -- 196 |
81 -- 87 |
-26.8 kcal/mol |
8.47001 kcal/mol |
6.1492 kcal/mol |
178 204@LB@ | |@LB@5'-GAA...GUCGU GA CA AAACC...CCG-3'@LB@ AGGUGA UGGGGAGUUC GCGUG@LB@ ||:|:| ||::||||:| |||||@LB@ UCUAUU ACUUCUCAGG CGCAC@LB@3'-UUU...ACUCC AG CUGA CCAGA...GUU-5'@LB@ | |@LB@ 99 71@LB@@LB@@LB@Energy -12.18 kcal/mol@LB@Hybridization Energy -26.8 kcal/mol@LB@Unfolding Energy - mRNA 8.47001 kcal/mol@LB@Unfolding Energy - sRNA 6.1492 kcal/mol@LB@@LB@Position - mRNA 179 -- 203@LB@Position - sRNA 72 -- 98@LB@Position Seed - mRNA 190 -- 196@LB@Position Seed - sRNA 81 -- 87@LB@ |
| 80 |
0.0008839 |
0.05078 |
pa0353 |
ilvD |
-13.41 |
0.028361 |
174 -- 187 |
107 -- 121 |
dihydroxy-acid dehydratase |
|
_____________173_____________188\n_____________|_______________|\n5'-UUC...AACCC_______________GCAGG...AGA-3'\n______________GAACC_UGAUUAGCC\n______________:||||_|||||||||\n______________UUUGG_ACUAAUCGG\n3'-UUU...CAGUU_____C_________ACUAC...GUU-5'\n_____________|_______________|\n_____________122_____________106\n |
181 -- 187 |
107 -- 113 |
-19.137 kcal/mol |
3.4906 kcal/mol |
2.23534 kcal/mol |
173 188@LB@ | |@LB@5'-UUC...AACCC GCAGG...AGA-3'@LB@ GAACC UGAUUAGCC@LB@ :|||| |||||||||@LB@ UUUGG ACUAAUCGG@LB@3'-UUU...CAGUU C ACUAC...GUU-5'@LB@ | |@LB@ 122 106@LB@@LB@@LB@Energy -13.41 kcal/mol@LB@Hybridization Energy -19.137 kcal/mol@LB@Unfolding Energy - mRNA 3.4906 kcal/mol@LB@Unfolding Energy - sRNA 2.23534 kcal/mol@LB@@LB@Position - mRNA 174 -- 187@LB@Position - sRNA 107 -- 121@LB@Position Seed - mRNA 181 -- 187@LB@Position Seed - sRNA 107 -- 113@LB@ |
