| 197 |
0.005405 |
0.1261 |
pa2580 |
N/A |
-16.79 |
0.002834 |
13 -- 30 |
70 -- 88 |
'Product name confidence: class 4 (Homologs of previously reported genes of unknown function or no similarity to any previously reported sequences)' |
|
_____________12__________________31\n_____________|___________________|\n5'-GUG...UCAUC___________________GGCGC...ACC-3'\n______________GAGGG_CUGGCUGCGUGGG\n______________:||:|_|:|:|||||||||\n______________UUCUC_GGCUGACGCACCC\n3'-UUU...UAGAC_____A_____________AGAGA...GUU-5'\n_____________|___________________|\n_____________89__________________69\n |
24 -- 30 |
70 -- 76 |
-30.7983 kcal/mol |
8.14478 kcal/mol |
5.86376 kcal/mol |
12 31@LB@ | |@LB@5'-GUG...UCAUC GGCGC...ACC-3'@LB@ GAGGG CUGGCUGCGUGGG@LB@ :||:| |:|:|||||||||@LB@ UUCUC GGCUGACGCACCC@LB@3'-UUU...UAGAC A AGAGA...GUU-5'@LB@ | |@LB@ 89 69@LB@@LB@@LB@Energy -16.79 kcal/mol@LB@Hybridization Energy -30.7983 kcal/mol@LB@Unfolding Energy - mRNA 8.14478 kcal/mol@LB@Unfolding Energy - sRNA 5.86376 kcal/mol@LB@@LB@Position - mRNA 13 -- 30@LB@Position - sRNA 70 -- 88@LB@Position Seed - mRNA 24 -- 30@LB@Position Seed - sRNA 70 -- 76@LB@ |
| 198 |
0.005468 |
0.1268 |
pa5463 |
N/A |
-11.00 |
0.109950 |
289 -- 298 |
38 -- 47 |
'Product name confidence: class 4 (Homologs of previously reported genes of unknown function or no similarity to any previously reported sequences)' |
|
_____________288________299\n_____________|__________|\n5'-GUU...GGUGG__________CA-3'\n______________UCGCGACCAG\n______________||||||||||\n______________AGCGCUGGUC\n3'-UUU...ACUAG__________AACUC...GUU-5'\n_____________|__________|\n_____________48_________37\n |
292 -- 298 |
38 -- 44 |
-19.1199 kcal/mol |
4.44679 kcal/mol |
3.68214 kcal/mol |
288 299@LB@ | |@LB@5'-GUU...GGUGG CA-3'@LB@ UCGCGACCAG@LB@ ||||||||||@LB@ AGCGCUGGUC@LB@3'-UUU...ACUAG AACUC...GUU-5'@LB@ | |@LB@ 48 37@LB@@LB@@LB@Energy -11.00 kcal/mol@LB@Hybridization Energy -19.1199 kcal/mol@LB@Unfolding Energy - mRNA 4.44679 kcal/mol@LB@Unfolding Energy - sRNA 3.68214 kcal/mol@LB@@LB@Position - mRNA 289 -- 298@LB@Position - sRNA 38 -- 47@LB@Position Seed - mRNA 292 -- 298@LB@Position Seed - sRNA 38 -- 44@LB@ |
| 199 |
0.005488 |
0.1268 |
pa1158 |
N/A |
-11.27 |
0.095596 |
213 -- 231 |
101 -- 120 |
two-component sensor |
|
_____________212__________________232\n_____________|____________________|\n5'-GCG...GACGC_____C_CGC__________ACGGC...CCG-3'\n______________AGCCG_G____GCCUGAUGA\n______________|:|||_|____|||||||||\n______________UUGGC_C____CGGACUACU\n3'-UUU...AGUUU_____A_UAAU_________CCUCU...GUU-5'\n_____________|____________________|\n_____________121__________________100\n |
225 -- 231 |
101 -- 107 |
-21.6813 kcal/mol |
8.17512 kcal/mol |
2.2437 kcal/mol |
212 232@LB@ | |@LB@5'-GCG...GACGC C CGC ACGGC...CCG-3'@LB@ AGCCG G GCCUGAUGA@LB@ |:||| | |||||||||@LB@ UUGGC C CGGACUACU@LB@3'-UUU...AGUUU A UAAU CCUCU...GUU-5'@LB@ | |@LB@ 121 100@LB@@LB@@LB@Energy -11.27 kcal/mol@LB@Hybridization Energy -21.6813 kcal/mol@LB@Unfolding Energy - mRNA 8.17512 kcal/mol@LB@Unfolding Energy - sRNA 2.2437 kcal/mol@LB@@LB@Position - mRNA 213 -- 231@LB@Position - sRNA 101 -- 120@LB@Position Seed - mRNA 225 -- 231@LB@Position Seed - sRNA 101 -- 107@LB@ |
| 200 |
0.005522 |
0.1269 |
pa1052 |
N/A |
-14.49 |
0.014391 |
203 -- 224 |
103 -- 123 |
'Product name confidence: class 4 (Homologs of previously reported genes of unknown function or no similarity to any previously reported sequences)' |
|
_____________202____________________225\n_____________|______________________|\n5'-AUG...CUGAU______________CU______UCGUU...AGG-3'\n______________GAAAAUCGUGAUUG__CCUGAU\n______________:||||:|||||||:__||||||\n______________UUUUUGGCACUAAU__GGACUA\n3'-UUU...CCCAG______________C_______CUCCU...GUU-5'\n_____________|______________________|\n_____________124____________________102\n |
210 -- 216 |
110 -- 116 |
-22.3823 kcal/mol |
5.65319 kcal/mol |
2.24344 kcal/mol |
202 225@LB@ | |@LB@5'-AUG...CUGAU CU UCGUU...AGG-3'@LB@ GAAAAUCGUGAUUG CCUGAU@LB@ :||||:|||||||: ||||||@LB@ UUUUUGGCACUAAU GGACUA@LB@3'-UUU...CCCAG C CUCCU...GUU-5'@LB@ | |@LB@ 124 102@LB@@LB@@LB@Energy -14.49 kcal/mol@LB@Hybridization Energy -22.3823 kcal/mol@LB@Unfolding Energy - mRNA 5.65319 kcal/mol@LB@Unfolding Energy - sRNA 2.24344 kcal/mol@LB@@LB@Position - mRNA 203 -- 224@LB@Position - sRNA 103 -- 123@LB@Position Seed - mRNA 210 -- 216@LB@Position Seed - sRNA 110 -- 116@LB@ |
| 139 |
0.002816 |
0.0931 |
pa1173 |
napB |
-8.92 |
0.288683 |
179 -- 194 |
100 -- 120 |
cytochrome C protein NapB |
|
_____________178___________________195\n_____________|_____________________|\n5'-GCG...UGCUC_________________G___CGCGC...ACG-3'\n______________AACC_____UGGCCUGA_GAG\n______________||||_____|:||||||_|||\n______________UUGG_____AUCGGACU_CUC\n3'-UUU...AGUUU____CACUA________A___CUCUA...GUU-5'\n_____________|_____________________|\n_____________121___________________99\n |
184 -- 190 |
104 -- 110 |
-18.0021 kcal/mol |
6.83795 kcal/mol |
2.24919 kcal/mol |
178 195@LB@ | |@LB@5'-GCG...UGCUC G CGCGC...ACG-3'@LB@ AACC UGGCCUGA GAG@LB@ |||| |:|||||| |||@LB@ UUGG AUCGGACU CUC@LB@3'-UUU...AGUUU CACUA A CUCUA...GUU-5'@LB@ | |@LB@ 121 99@LB@@LB@@LB@Energy -8.92 kcal/mol@LB@Hybridization Energy -18.0021 kcal/mol@LB@Unfolding Energy - mRNA 6.83795 kcal/mol@LB@Unfolding Energy - sRNA 2.24919 kcal/mol@LB@@LB@Position - mRNA 179 -- 194@LB@Position - sRNA 100 -- 120@LB@Position Seed - mRNA 184 -- 190@LB@Position Seed - sRNA 104 -- 110@LB@ |
| 63 |
0.0005567 |
0.04061 |
pa4538 |
ndh |
-15.78 |
0.005953 |
57 -- 71 |
102 -- 118 |
NADH dehydrogenase |
|
_____________56________________72\n_____________|_________________|\n5'-AGG...UCCGC_________________UUCGU...UCA-3'\n______________CCGUGGUU__CCUGAUG\n______________|||||:||__|||||||\n______________GGCACUAA__GGACUAC\n3'-UUU...UUUUU________UC_______UCCUC...GUU-5'\n_____________|_________________|\n_____________119_______________101\n |
65 -- 71 |
102 -- 108 |
-20.7877 kcal/mol |
2.76363 kcal/mol |
2.2426 kcal/mol |
56 72@LB@ | |@LB@5'-AGG...UCCGC UUCGU...UCA-3'@LB@ CCGUGGUU CCUGAUG@LB@ |||||:|| |||||||@LB@ GGCACUAA GGACUAC@LB@3'-UUU...UUUUU UC UCCUC...GUU-5'@LB@ | |@LB@ 119 101@LB@@LB@@LB@Energy -15.78 kcal/mol@LB@Hybridization Energy -20.7877 kcal/mol@LB@Unfolding Energy - mRNA 2.76363 kcal/mol@LB@Unfolding Energy - sRNA 2.2426 kcal/mol@LB@@LB@Position - mRNA 57 -- 71@LB@Position - sRNA 102 -- 118@LB@Position Seed - mRNA 65 -- 71@LB@Position Seed - sRNA 102 -- 108@LB@ |
| 136 |
0.00271 |
0.09122 |
pa0516 |
nirF |
-12.42 |
0.050980 |
176 -- 250 |
51 -- 109 |
heme d1 biosynthesis protein NirF |
pa0519 pa0509 |
_____________175___________________________________________________________________________251\n_____________|_____________________________________________________________________________|\n5'-UCC...GGACC_______C_A___________GCCCCA____CCU_C____C___C___CC_CU___C____CCCU___C________UAGCC...UCG-3'\n______________GCCUGAU_G_AGGAGA_GAUC______UGAA___G_GUCC__CU_GCG__G__UCU_CUCA____GCU_GCCGGCUG\n______________|||||||_|_||||||_:|||______||||___|_||||__||_|||__|__|||_||||____|||_:|||||||\n______________CGGACUA_C_UCCUCU_UUAG______ACUU___C_CAGG__GA_CGC__C__AGA_GAGU____CGA_UGGCCGAC\n3'-UUU...CUAAU________________A__________________U____CU______A__CC_______________A________UAGAG...GUU-5'\n_____________|_____________________________________________________________________________|\n_____________110___________________________________________________________________________50\n |
244 -- 250 |
51 -- 57 |
-56.426 kcal/mol |
22.2414 kcal/mol |
21.7733 kcal/mol |
175 251@LB@ | |@LB@5'-UCC...GGACC C A GCCCCA CCU C C C CC CU C CCCU C UAGCC...UCG-3'@LB@ GCCUGAU G AGGAGA GAUC UGAA G GUCC CU GCG G UCU CUCA GCU GCCGGCUG@LB@ ||||||| | |||||| :||| |||| | |||| || ||| | ||| |||| ||| :|||||||@LB@ CGGACUA C UCCUCU UUAG ACUU C CAGG GA CGC C AGA GAGU CGA UGGCCGAC@LB@3'-UUU...CUAAU A U CU A CC A UAGAG...GUU-5'@LB@ | |@LB@ 110 50@LB@@LB@@LB@Energy -12.42 kcal/mol@LB@Hybridization Energy -56.426 kcal/mol@LB@Unfolding Energy - mRNA 22.2414 kcal/mol@LB@Unfolding Energy - sRNA 21.7733 kcal/mol@LB@@LB@Position - mRNA 176 -- 250@LB@Position - sRNA 51 -- 109@LB@Position Seed - mRNA 244 -- 250@LB@Position Seed - sRNA 51 -- 57@LB@ |
| 156 |
0.00379 |
0.1117 |
pa3495 |
nth |
-14.09 |
0.018638 |
94 -- 117 |
105 -- 123 |
endonuclease III |
|
_____________93_______________________118\n_____________|________________________|\n5'-UGG...CCCUG_________AUC___GAA______GCGGA...UCA-3'\n______________AAGAACCGU___GAU___AGCCUG\n______________||:||||||___|||___||||||\n______________UUUUUGGCA___CUA___UCGGAC\n3'-UUU...CCCAG_______________A________UACUC...GUU-5'\n_____________|________________________|\n_____________124______________________104\n |
96 -- 102 |
115 -- 121 |
-18.312 kcal/mol |
1.98459 kcal/mol |
2.24275 kcal/mol |
93 118@LB@ | |@LB@5'-UGG...CCCUG AUC GAA GCGGA...UCA-3'@LB@ AAGAACCGU GAU AGCCUG@LB@ ||:|||||| ||| ||||||@LB@ UUUUUGGCA CUA UCGGAC@LB@3'-UUU...CCCAG A UACUC...GUU-5'@LB@ | |@LB@ 124 104@LB@@LB@@LB@Energy -14.09 kcal/mol@LB@Hybridization Energy -18.312 kcal/mol@LB@Unfolding Energy - mRNA 1.98459 kcal/mol@LB@Unfolding Energy - sRNA 2.24275 kcal/mol@LB@@LB@Position - mRNA 94 -- 117@LB@Position - sRNA 105 -- 123@LB@Position Seed - mRNA 96 -- 102@LB@Position Seed - sRNA 115 -- 121@LB@ |
| 123 |
0.00223 |
0.08331 |
pa0552 |
pgk |
-10.33 |
0.153234 |
163 -- 259 |
42 -- 119 |
phosphoglycerate kinase |
|
_____________162________________________________________________________________________________________________________260\n_____________|__________________________________________________________________________________________________________|\n5'-CAC...GCGCC_________________CAACAAGUACCCA____CU___U___AUGACCGUGU_______________ACCUCGAC___AAA___AA__G__U_____________GGACC...GCG-3'\n______________GCCGU_____GCCUGAU_____________AGGA__GAU_GUC__________UGAAGA___UGACUG________CUC___GGU__GC_CG_GCUGAUC_CGCGA\n______________:||||_____|||||||_____________||||__|||_:||__________||||||___:|||||________|||___:|:__:|_||_|||||||_|||||\n______________UGGCA_____CGGACUA_____________UCCU__CUA_UAG__________ACUUCU___GCUGAC________GAG___UCG__UG_GC_CGACUAG_GCGCU\n3'-UUU...GUUUU_____CUAAU_______C_____________________U___________________CAG______GCACCCA____AG____AA_____________A_____GGUCA...GUU-5'\n_____________|__________________________________________________________________________________________________________|\n_____________120________________________________________________________________________________________________________41\n |
248 -- 254 |
48 -- 54 |
-58.6651 kcal/mol |
25.0123 kcal/mol |
23.3319 kcal/mol |
162 260@LB@ | |@LB@5'-CAC...GCGCC CAACAAGUACCCA CU U AUGACCGUGU ACCUCGAC AAA AA G U GGACC...GCG-3'@LB@ GCCGU GCCUGAU AGGA GAU GUC UGAAGA UGACUG CUC GGU GC CG GCUGAUC CGCGA@LB@ :|||| ||||||| |||| ||| :|| |||||| :||||| ||| :|: :| || ||||||| |||||@LB@ UGGCA CGGACUA UCCU CUA UAG ACUUCU GCUGAC GAG UCG UG GC CGACUAG GCGCU@LB@3'-UUU...GUUUU CUAAU C U CAG GCACCCA AG AA A GGUCA...GUU-5'@LB@ | |@LB@ 120 41@LB@@LB@@LB@Energy -10.33 kcal/mol@LB@Hybridization Energy -58.6651 kcal/mol@LB@Unfolding Energy - mRNA 25.0123 kcal/mol@LB@Unfolding Energy - sRNA 23.3319 kcal/mol@LB@@LB@Position - mRNA 163 -- 259@LB@Position - sRNA 42 -- 119@LB@Position Seed - mRNA 248 -- 254@LB@Position Seed - sRNA 48 -- 54@LB@ |
| 98 |
0.001381 |
0.06477 |
pa5040 |
pilQ |
-10.76 |
0.123916 |
69 -- 120 |
75 -- 117 |
type 4 fimbrial biogenesis outer membrane protein PilQ |
|
_____________68_____________________________________________________121\n_____________|______________________________________________________|\n5'-GUG...AUAGA______CGAAAUCGUU_____CGGA_______ACUGG______C__________AGCCU...CAC-3'\n______________CGUGAU__________CCUGA____GAGGGGA_____CUGGAG_GUCCG_C_GC\n______________||||||__________|||||____||||:||_____|||:||_|||||_|_||\n______________GCACUA__________GGACU____CUCCUCU_____GACUUC_CAGGC_G_CG\n3'-UUU...UUUUG______AUC____________A__________AUUA_______U_____U_A__CACCC...GUU-5'\n_____________|______________________________________________________|\n_____________118____________________________________________________74\n |
94 -- 100 |
96 -- 102 |
-39.923 kcal/mol |
16.9987 kcal/mol |
12.1721 kcal/mol |
68 121@LB@ | |@LB@5'-GUG...AUAGA CGAAAUCGUU CGGA ACUGG C AGCCU...CAC-3'@LB@ CGUGAU CCUGA GAGGGGA CUGGAG GUCCG C GC@LB@ |||||| ||||| ||||:|| |||:|| ||||| | ||@LB@ GCACUA GGACU CUCCUCU GACUUC CAGGC G CG@LB@3'-UUU...UUUUG AUC A AUUA U U A CACCC...GUU-5'@LB@ | |@LB@ 118 74@LB@@LB@@LB@Energy -10.76 kcal/mol@LB@Hybridization Energy -39.923 kcal/mol@LB@Unfolding Energy - mRNA 16.9987 kcal/mol@LB@Unfolding Energy - sRNA 12.1721 kcal/mol@LB@@LB@Position - mRNA 69 -- 120@LB@Position - sRNA 75 -- 117@LB@Position Seed - mRNA 94 -- 100@LB@Position Seed - sRNA 96 -- 102@LB@ |
