10 |
0.002311 |
0.4469 |
lmo2106 |
N/A |
-20.89 |
0.006356 |
172 -- 222 |
159 -- 207 |
|
|
_____________171__________________________________________________223\n_____________|____________________________________________________|\n5'-AGU...UAAUA_______AC__CAA______G_____AAA____U__UUAA_______G____UUAUA...AUG-3'\n______________AAUGGGA__AG___CAUAGA_GUGAA____AUG_CU____AGAUGAA_UGGA\n______________||:||||__||___||||||_:||||____|:|_|:____|||||||_||:|\n______________UUGCCCU__UC___GUAUCU_UACUU____UGC_GG____UCUACUU_ACUU\n3'-GUU...ACGUA_______AC__C________G_____GAUG___C__UUAC____________UUGUU...GGA-5'\n_____________|____________________________________________________|\n_____________208__________________________________________________158\n |
211 -- 217 |
163 -- 169 |
-34.9864 kcal/mol |
6.68059 kcal/mol |
18.5724 kcal/mol |
171 223@LB@ | |@LB@5'-AGU...UAAUA AC CAA G AAA U UUAA G UUAUA...AUG-3'@LB@ AAUGGGA AG CAUAGA GUGAA AUG CU AGAUGAA UGGA@LB@ ||:|||| || |||||| :|||| |:| |: ||||||| ||:|@LB@ UUGCCCU UC GUAUCU UACUU UGC GG UCUACUU ACUU@LB@3'-GUU...ACGUA AC C G GAUG C UUAC UUGUU...GGA-5'@LB@ | |@LB@ 208 158@LB@@LB@@LB@Energy -20.89 kcal/mol@LB@Hybridization Energy -34.9864 kcal/mol@LB@Unfolding Energy - mRNA 6.68059 kcal/mol@LB@Unfolding Energy - sRNA 18.5724 kcal/mol@LB@@LB@Position - mRNA 172 -- 222@LB@Position - sRNA 159 -- 207@LB@Position Seed - mRNA 211 -- 217@LB@Position Seed - sRNA 163 -- 169@LB@ |
11 |
0.002745 |
0.4469 |
lmo0197 |
N/A |
-21.05 |
0.005861 |
175 -- 258 |
154 -- 211 |
regulatory protein SpoVG |
|
_____________174__________________259\n_____________|____________________|\n5'-UUA...AAACU_______A____________UUGCU...AUA-3'\n______________GAUG_GA_GAAUGAGAGCGA\n______________:|||_||_||||||:|:|:|\n______________UUAC_CU_CUUACUUUUGUU\n3'-GUU...GCCGG____U__A____________UAUUA...GGA-5'\n_____________|____________________|\n_____________212__________________153\n |
252 -- 258 |
154 -- 160 |
-17.4227 kcal/mol |
2.96559 kcal/mol |
0.959215 kcal/mol |
174 259@LB@ | |@LB@5'-UUA...AAACU A UUGCU...AUA-3'@LB@ GAUG GA GAAUGAGAGCGA@LB@ :||| || ||||||:|:|:|@LB@ UUAC CU CUUACUUUUGUU@LB@3'-GUU...GCCGG U A UAUUA...GGA-5'@LB@ | |@LB@ 212 153@LB@@LB@@LB@Energy -21.05 kcal/mol@LB@Hybridization Energy -17.4227 kcal/mol@LB@Unfolding Energy - mRNA 2.96559 kcal/mol@LB@Unfolding Energy - sRNA 0.959215 kcal/mol@LB@@LB@Position - mRNA 175 -- 258@LB@Position - sRNA 154 -- 211@LB@Position Seed - mRNA 252 -- 258@LB@Position Seed - sRNA 154 -- 160@LB@ |
13 |
0.002947 |
0.4469 |
lmo0233 |
N/A |
-20.88 |
0.006381 |
238 -- 276 |
156 -- 198 |
DNA repair protein RadA |
|
_____________237_____________________________________________277\n_____________|_______________________________________________|\n5'-AAA...GUGUC______GU__________________AA___________________UCCGA...CNN-3'\n______________AGGCAU__GGAUAUGAAU____CGGC__AAUG_GAUGG__GAAAAUG\n______________||||||__:||:|||||:____||||__||||_||||:__|||||::\n______________UCCGUA__UCUGUACUUG____GCCG__UUAC_CUACU__CUUUUGU\n3'-GUU...CCUAC__________________AUGU____G_____U_____UA_______UUAUU...GGA-5'\n_____________|_______________________________________________|\n_____________199_____________________________________________155\n |
271 -- 277 |
155 -- 161 |
-35.3246 kcal/mol |
8.28493 kcal/mol |
13.976 kcal/mol |
237 277@LB@ | |@LB@5'-AAA...GUGUC GU AA UCCGA...CNN-3'@LB@ AGGCAU GGAUAUGAAU CGGC AAUG GAUGG GAAAAUG@LB@ |||||| :||:|||||: |||| |||| ||||: |||||::@LB@ UCCGUA UCUGUACUUG GCCG UUAC CUACU CUUUUGU@LB@3'-GUU...CCUAC AUGU G U UA UUAUU...GGA-5'@LB@ | |@LB@ 199 155@LB@@LB@@LB@Energy -20.88 kcal/mol@LB@Hybridization Energy -35.3246 kcal/mol@LB@Unfolding Energy - mRNA 8.28493 kcal/mol@LB@Unfolding Energy - sRNA 13.976 kcal/mol@LB@@LB@Position - mRNA 238 -- 276@LB@Position - sRNA 156 -- 198@LB@Position Seed - mRNA 271 -- 277@LB@Position Seed - sRNA 155 -- 161@LB@ |
14 |
0.00304 |
0.4469 |
lmo1187 |
N/A |
-19.26 |
0.014311 |
139 -- 172 |
153 -- 183 |
ethanolamine utilization protein EutQ |
|
_____________138_______________________________173\n_____________|_________________________________|\n5'-UAA...GGUAU____________CC__AU______GA_______AGCAA...UUU-3'\n______________CUAUAUGGCUAA__GA__GAUGAA__AAAAUAA\n______________|||:|:|||:||__||__||||||__||||:||\n______________GAUGUGCCGGUU__CU__CUACUU__UUUUGUU\n3'-GUU...UACUU____________A___________AC_______UAUUA...GGA-5'\n_____________|_________________________________|\n_____________184_______________________________152\n |
165 -- 171 |
154 -- 160 |
-25.2263 kcal/mol |
3.98561 kcal/mol |
9.539 kcal/mol |
138 173@LB@ | |@LB@5'-UAA...GGUAU CC AU GA AGCAA...UUU-3'@LB@ CUAUAUGGCUAA GA GAUGAA AAAAUAA@LB@ |||:|:|||:|| || |||||| ||||:||@LB@ GAUGUGCCGGUU CU CUACUU UUUUGUU@LB@3'-GUU...UACUU A AC UAUUA...GGA-5'@LB@ | |@LB@ 184 152@LB@@LB@@LB@Energy -19.26 kcal/mol@LB@Hybridization Energy -25.2263 kcal/mol@LB@Unfolding Energy - mRNA 3.98561 kcal/mol@LB@Unfolding Energy - sRNA 9.539 kcal/mol@LB@@LB@Position - mRNA 139 -- 172@LB@Position - sRNA 153 -- 183@LB@Position Seed - mRNA 165 -- 171@LB@Position Seed - sRNA 154 -- 160@LB@ |
15 |
0.003165 |
0.4469 |
lmo0292 |
N/A |
-21.41 |
0.004857 |
182 -- 249 |
155 -- 212 |
heat-shock protein htrA serine protease |
|
_____________181_____________________________________________________________250\n_____________|_______________________________________________________________|\n5'-GAG...GCAGA____AAGGA__________G_G_AAGAAAAGAAUUUA_____AAACAGC______________CGCCG...AAC-3'\n______________GAGG_____AGACAUGGAC_A_A______________AAUGA_______GA_GAAUGAAAGCA\n______________||||_____|||||||:||_|_|______________|||||_______||_||||||||:||\n______________CUCC_____UCUGUACUUG_U_U______________UUACU_______CU_CUUACUUUUGU\n3'-GUU...CCCUA____GUA____________A_G_GCCGG_______________________A___________UUAUU...GGA-5'\n_____________|_______________________________________________________________|\n_____________213_____________________________________________________________154\n |
243 -- 249 |
155 -- 161 |
-30.3296 kcal/mol |
4.19045 kcal/mol |
13.9822 kcal/mol |
181 250@LB@ | |@LB@5'-GAG...GCAGA AAGGA G G AAGAAAAGAAUUUA AAACAGC CGCCG...AAC-3'@LB@ GAGG AGACAUGGAC A A AAUGA GA GAAUGAAAGCA@LB@ |||| |||||||:|| | | ||||| || ||||||||:||@LB@ CUCC UCUGUACUUG U U UUACU CU CUUACUUUUGU@LB@3'-GUU...CCCUA GUA A G GCCGG A UUAUU...GGA-5'@LB@ | |@LB@ 213 154@LB@@LB@@LB@Energy -21.41 kcal/mol@LB@Hybridization Energy -30.3296 kcal/mol@LB@Unfolding Energy - mRNA 4.19045 kcal/mol@LB@Unfolding Energy - sRNA 13.9822 kcal/mol@LB@@LB@Position - mRNA 182 -- 249@LB@Position - sRNA 155 -- 212@LB@Position Seed - mRNA 243 -- 249@LB@Position Seed - sRNA 155 -- 161@LB@ |
17 |
0.003248 |
0.4469 |
lmo1161 |
N/A |
-22.54 |
0.002685 |
189 -- 238 |
155 -- 204 |
ethanolamine utilization protein EutJ |
|
_____________188___________________________________________________239\n_____________|_____________________________________________________|\n5'-GGU...GUAAG_____GGAAAA________U_______AACA________AC____________GCUUG...AAG-3'\n______________GAGGU______AUGGAUAU___UUACA____GCCAAUGA___GAAUGGAA_CA\n______________||||:______||:||:||___:||||____||||||||___|||||:||_||\n______________CUCCG______UAUCUGUA___GAUGU____CGGUUACU___CUUACUUU_GU\n3'-GUU...CCCUA___________________CUU_____GC__________CUA________U__UUAUU...GGA-5'\n_____________|_____________________________________________________|\n_____________205___________________________________________________154\n |
230 -- 236 |
158 -- 164 |
-34.4634 kcal/mol |
5.85583 kcal/mol |
13.9822 kcal/mol |
188 239@LB@ | |@LB@5'-GGU...GUAAG GGAAAA U AACA AC GCUUG...AAG-3'@LB@ GAGGU AUGGAUAU UUACA GCCAAUGA GAAUGGAA CA@LB@ ||||: ||:||:|| :|||| |||||||| |||||:|| ||@LB@ CUCCG UAUCUGUA GAUGU CGGUUACU CUUACUUU GU@LB@3'-GUU...CCCUA CUU GC CUA U UUAUU...GGA-5'@LB@ | |@LB@ 205 154@LB@@LB@@LB@Energy -22.54 kcal/mol@LB@Hybridization Energy -34.4634 kcal/mol@LB@Unfolding Energy - mRNA 5.85583 kcal/mol@LB@Unfolding Energy - sRNA 13.9822 kcal/mol@LB@@LB@Position - mRNA 189 -- 238@LB@Position - sRNA 155 -- 204@LB@Position Seed - mRNA 230 -- 236@LB@Position Seed - sRNA 158 -- 164@LB@ |
18 |
0.003504 |
0.4469 |
lmo0129 |
N/A |
-18.06 |
0.025228 |
187 -- 226 |
176 -- 203 |
N-acetylmuramoyl-L-alanine amidase |
|
_____________186____________227\n_____________|______________|\n5'-UUU...GUCAG______________AAAAC...AAC-3'\n______________GAGA_GGAUGAGGA\n______________||||_|:||||::|\n______________CUCU_CUUACUUUU\n3'-GUU...GGUUA____A_________GUUUA...GGA-5'\n_____________|______________|\n_____________204____________175\n |
189 -- 195 |
157 -- 163 |
-12.9517 kcal/mol |
0.542108 kcal/mol |
0.904482 kcal/mol |
186 227@LB@ | |@LB@5'-UUU...GUCAG AAAAC...AAC-3'@LB@ GAGA GGAUGAGGA@LB@ |||| |:||||::|@LB@ CUCU CUUACUUUU@LB@3'-GUU...GGUUA A GUUUA...GGA-5'@LB@ | |@LB@ 204 175@LB@@LB@@LB@Energy -18.06 kcal/mol@LB@Hybridization Energy -12.9517 kcal/mol@LB@Unfolding Energy - mRNA 0.542108 kcal/mol@LB@Unfolding Energy - sRNA 0.904482 kcal/mol@LB@@LB@Position - mRNA 187 -- 226@LB@Position - sRNA 176 -- 203@LB@Position Seed - mRNA 189 -- 195@LB@Position Seed - sRNA 157 -- 163@LB@ |
19 |
0.003536 |
0.4469 |
lmo0321 |
N/A |
-22.74 |
0.002408 |
114 -- 157 |
167 -- 207 |
|
|
_____________113____________________________________________158\n_____________|______________________________________________|\n5'-AUU...UGUUA________UA____G_AC__________GGA_____U_________AUGUU...AGG-3'\n______________AGCGGGAU__GAGG_A__UAGGUA_GAA____ACGG_CUAAUGAGA\n______________|:||||||__||||_|__|||::|_|||____||||_|:|||||||\n______________UUGCCCUA__CUCC_U__AUCUGU_CUU____UGCC_GGUUACUCU\n3'-GUU...ACGUA______________G_________A___GAUG______________ACUUA...GGA-5'\n_____________|______________________________________________|\n_____________208____________________________________________166\n |
151 -- 157 |
167 -- 173 |
-39.7249 kcal/mol |
9.73371 kcal/mol |
18.0488 kcal/mol |
113 158@LB@ | |@LB@5'-AUU...UGUUA UA G AC GGA U AUGUU...AGG-3'@LB@ AGCGGGAU GAGG A UAGGUA GAA ACGG CUAAUGAGA@LB@ |:|||||| |||| | |||::| ||| |||| |:|||||||@LB@ UUGCCCUA CUCC U AUCUGU CUU UGCC GGUUACUCU@LB@3'-GUU...ACGUA G A GAUG ACUUA...GGA-5'@LB@ | |@LB@ 208 166@LB@@LB@@LB@Energy -22.74 kcal/mol@LB@Hybridization Energy -39.7249 kcal/mol@LB@Unfolding Energy - mRNA 9.73371 kcal/mol@LB@Unfolding Energy - sRNA 18.0488 kcal/mol@LB@@LB@Position - mRNA 114 -- 157@LB@Position - sRNA 167 -- 207@LB@Position Seed - mRNA 151 -- 157@LB@Position Seed - sRNA 167 -- 173@LB@ |
22 |
0.003708 |
0.4469 |
lmo1689 |
N/A |
-20.94 |
0.006216 |
185 -- 218 |
155 -- 186 |
A/G-specific adenine glycosylase |
|
_____________184________________________________219\n_____________|__________________________________|\n5'-UGA...UAUUA________A__GGAA_______AA________G_CUAAC...CGU-3'\n______________GAAUUACG_GG____AAUGAGA__AAUGAAGA_A\n______________|||:|||:_||____|||||||__||||||:|_|\n______________CUUGAUGU_CC____UUACUCU__UUACUUUU_U\n3'-GUU...CUGUA________G__GG_________AC________G_UUAUU...GGA-5'\n_____________|__________________________________|\n_____________187________________________________154\n |
210 -- 216 |
157 -- 163 |
-27.9128 kcal/mol |
3.65812 kcal/mol |
9.66922 kcal/mol |
184 219@LB@ | |@LB@5'-UGA...UAUUA A GGAA AA G CUAAC...CGU-3'@LB@ GAAUUACG GG AAUGAGA AAUGAAGA A@LB@ |||:|||: || ||||||| ||||||:| |@LB@ CUUGAUGU CC UUACUCU UUACUUUU U@LB@3'-GUU...CUGUA G GG AC G UUAUU...GGA-5'@LB@ | |@LB@ 187 154@LB@@LB@@LB@Energy -20.94 kcal/mol@LB@Hybridization Energy -27.9128 kcal/mol@LB@Unfolding Energy - mRNA 3.65812 kcal/mol@LB@Unfolding Energy - sRNA 9.66922 kcal/mol@LB@@LB@Position - mRNA 185 -- 218@LB@Position - sRNA 155 -- 186@LB@Position Seed - mRNA 210 -- 216@LB@Position Seed - sRNA 157 -- 163@LB@ |
24 |
0.004153 |
0.4656 |
lmo1386 |
N/A |
-22.14 |
0.003328 |
2 -- 37 |
155 -- 186 |
DNA translocase |
|
_____________1____________________________________38\n_____________|____________________________________|\n__________5'-G___G________G__AAGCU______CAC_______CCGCA...UUA-3'\n______________GAA_UACGCGGC_GA_____GAUGAA___GAAAACA\n______________|||_|||:||||_:|_____||||||___|||||||\n______________CUU_AUGUGCCG_UU_____CUACUU___CUUUUGU\n3'-GUU...CUGUA___G________G__ACU________A_________UUAUU...GGA-5'\n_____________|____________________________________|\n_____________187__________________________________154\n |
31 -- 37 |
155 -- 161 |
-32.0969 kcal/mol |
6.67763 kcal/mol |
9.66922 kcal/mol |
1 38@LB@ | |@LB@ 5'-G G G AAGCU CAC CCGCA...UUA-3'@LB@ GAA UACGCGGC GA GAUGAA GAAAACA@LB@ ||| |||:|||| :| |||||| |||||||@LB@ CUU AUGUGCCG UU CUACUU CUUUUGU@LB@3'-GUU...CUGUA G G ACU A UUAUU...GGA-5'@LB@ | |@LB@ 187 154@LB@@LB@@LB@Energy -22.14 kcal/mol@LB@Hybridization Energy -32.0969 kcal/mol@LB@Unfolding Energy - mRNA 6.67763 kcal/mol@LB@Unfolding Energy - sRNA 9.66922 kcal/mol@LB@@LB@Position - mRNA 2 -- 37@LB@Position - sRNA 155 -- 186@LB@Position Seed - mRNA 31 -- 37@LB@Position Seed - sRNA 155 -- 161@LB@ |