143 |
0.03726 |
0.6968 |
lmo2701 |
N/A |
-17.97 |
0.026314 |
78 -- 126 |
156 -- 198 |
|
|
_____________77_________________________________________________127\n_____________|__________________________________________________|\n5'-GAA...CCUUC_______AAAGUA___A____AGC________UUCCA_____________UUAGA...UCA-3'\n______________AGGCAUA______ACG_GAAU___GCAUGGCC______GUGGGUGGAGAC\n______________|||||||______||:_|||:___:||:||||______:||::||:|:||\n______________UCCGUAU______UGU_CUUG___UGUGCCGG______UACUUACUUUUG\n3'-GUU...CCUAC_______C________A____A__________UUACUC____________UUUAU...GGA-5'\n_____________|__________________________________________________|\n_____________199________________________________________________155\n |
120 -- 126 |
156 -- 162 |
-37.6493 kcal/mol |
12.7788 kcal/mol |
13.9626 kcal/mol |
77 127@LB@ | |@LB@5'-GAA...CCUUC AAAGUA A AGC UUCCA UUAGA...UCA-3'@LB@ AGGCAUA ACG GAAU GCAUGGCC GUGGGUGGAGAC@LB@ ||||||| ||: |||: :||:|||| :||::||:|:||@LB@ UCCGUAU UGU CUUG UGUGCCGG UACUUACUUUUG@LB@3'-GUU...CCUAC C A A UUACUC UUUAU...GGA-5'@LB@ | |@LB@ 199 155@LB@@LB@@LB@Energy -17.97 kcal/mol@LB@Hybridization Energy -37.6493 kcal/mol@LB@Unfolding Energy - mRNA 12.7788 kcal/mol@LB@Unfolding Energy - sRNA 13.9626 kcal/mol@LB@@LB@Position - mRNA 78 -- 126@LB@Position - sRNA 156 -- 198@LB@Position Seed - mRNA 120 -- 126@LB@Position Seed - sRNA 156 -- 162@LB@ |
144 |
0.03753 |
0.6968 |
lmo2422 |
N/A |
-16.62 |
0.048504 |
29 -- 68 |
172 -- 209 |
two-component response regulator |
|
_____________28___________________________________69\n_____________|____________________________________|\n5'-AUG...AUUCG____________AAAU_______G___U________UUUAU...AUG-3'\n______________CUAUGU__GACG____UGAGGCA_AGA_UAUGAAUU\n______________|||||:__:|||____|||||||_|||_:|||||:|\n______________GAUACG__UUGC____ACUCCGU_UCU_GUACUUGA\n3'-GUU...CCGCG______UA____CCU________A____________UGUGC...GGA-5'\n_____________|____________________________________|\n_____________210__________________________________171\n |
39 -- 45 |
194 -- 200 |
-29.3631 kcal/mol |
6.47642 kcal/mol |
13.3074 kcal/mol |
28 69@LB@ | |@LB@5'-AUG...AUUCG AAAU G U UUUAU...AUG-3'@LB@ CUAUGU GACG UGAGGCA AGA UAUGAAUU@LB@ |||||: :||| ||||||| ||| :|||||:|@LB@ GAUACG UUGC ACUCCGU UCU GUACUUGA@LB@3'-GUU...CCGCG UA CCU A UGUGC...GGA-5'@LB@ | |@LB@ 210 171@LB@@LB@@LB@Energy -16.62 kcal/mol@LB@Hybridization Energy -29.3631 kcal/mol@LB@Unfolding Energy - mRNA 6.47642 kcal/mol@LB@Unfolding Energy - sRNA 13.3074 kcal/mol@LB@@LB@Position - mRNA 29 -- 68@LB@Position - sRNA 172 -- 209@LB@Position Seed - mRNA 39 -- 45@LB@Position Seed - sRNA 194 -- 200@LB@ |
145 |
0.03765 |
0.6968 |
lmo0134 |
N/A |
-12.36 |
0.267504 |
193 -- 220 |
147 -- 170 |
|
|
_____________192__________________________221\n_____________|____________________________|\n5'-GGG...AGGAG_____UA_______UAUAA_________AAAUA...UUA-3'\n______________GAGAU__AAUGGAA_____AAAUGGUGA\n______________|||||__||||:||_____||||::|||\n______________CUCUA__UUACUUU_____UUUAUUACU\n3'-GUU...GGUUA_____C________UG____________AAAAC...GGA-5'\n_____________|____________________________|\n_____________171__________________________146\n |
200 -- 206 |
158 -- 164 |
-15.5721 kcal/mol |
1.73331 kcal/mol |
5.93585 kcal/mol |
192 221@LB@ | |@LB@5'-GGG...AGGAG UA UAUAA AAAUA...UUA-3'@LB@ GAGAU AAUGGAA AAAUGGUGA@LB@ ||||| ||||:|| ||||::|||@LB@ CUCUA UUACUUU UUUAUUACU@LB@3'-GUU...GGUUA C UG AAAAC...GGA-5'@LB@ | |@LB@ 171 146@LB@@LB@@LB@Energy -12.36 kcal/mol@LB@Hybridization Energy -15.5721 kcal/mol@LB@Unfolding Energy - mRNA 1.73331 kcal/mol@LB@Unfolding Energy - sRNA 5.93585 kcal/mol@LB@@LB@Position - mRNA 193 -- 220@LB@Position - sRNA 147 -- 170@LB@Position Seed - mRNA 200 -- 206@LB@Position Seed - sRNA 158 -- 164@LB@ |
146 |
0.03799 |
0.6968 |
lmo1526 |
N/A |
-15.66 |
0.073786 |
160 -- 215 |
153 -- 207 |
|
|
_____________159____________________216\n_____________|______________________|\n5'-AUG...AGGAG____AAACA____A________AGUAC...UAA-3'\n______________GAGA_____UGAA_GAAAAUAA\n______________||||_____||||_|||||:||\n______________CUCU_____ACUU_CUUUUGUU\n3'-GUU...GGUUA_____________A________UAUUA...GGA-5'\n_____________|______________________|\n_____________208____________________152\n |
208 -- 214 |
154 -- 160 |
-11.4679 kcal/mol |
1.00795 kcal/mol |
0.933796 kcal/mol |
159 216@LB@ | |@LB@5'-AUG...AGGAG AAACA A AGUAC...UAA-3'@LB@ GAGA UGAA GAAAAUAA@LB@ |||| |||| |||||:||@LB@ CUCU ACUU CUUUUGUU@LB@3'-GUU...GGUUA A UAUUA...GGA-5'@LB@ | |@LB@ 208 152@LB@@LB@@LB@Energy -15.66 kcal/mol@LB@Hybridization Energy -11.4679 kcal/mol@LB@Unfolding Energy - mRNA 1.00795 kcal/mol@LB@Unfolding Energy - sRNA 0.933796 kcal/mol@LB@@LB@Position - mRNA 160 -- 215@LB@Position - sRNA 153 -- 207@LB@Position Seed - mRNA 208 -- 214@LB@Position Seed - sRNA 154 -- 160@LB@ |
147 |
0.03815 |
0.6968 |
lmo0655 |
N/A |
-15.78 |
0.070044 |
227 -- 290 |
154 -- 212 |
phosphoprotein phosphatase |
|
_____________226_____________291\n_____________|_______________|\n______5'-AACAA______UU_______CCACA...UUG-3'\n______________GAGA_G__UGAAGAC\n______________||||_|__||||:||\n______________CUCU_C__ACUUUUG\n3'-GUU...GGUUA____A_UU_______UUUAU...GGA-5'\n_____________|_______________|\n_____________213_____________153\n |
13 -- 19 |
156 -- 162 |
-12.8457 kcal/mol |
3.32795 kcal/mol |
0.916023 kcal/mol |
226 291@LB@ | |@LB@ 5'-AACAA UU CCACA...UUG-3'@LB@ GAGA G UGAAGAC@LB@ |||| | ||||:||@LB@ CUCU C ACUUUUG@LB@3'-GUU...GGUUA A UU UUUAU...GGA-5'@LB@ | |@LB@ 213 153@LB@@LB@@LB@Energy -15.78 kcal/mol@LB@Hybridization Energy -12.8457 kcal/mol@LB@Unfolding Energy - mRNA 3.32795 kcal/mol@LB@Unfolding Energy - sRNA 0.916023 kcal/mol@LB@@LB@Position - mRNA 227 -- 290@LB@Position - sRNA 154 -- 212@LB@Position Seed - mRNA 13 -- 19@LB@Position Seed - sRNA 156 -- 162@LB@ |
150 |
0.03884 |
0.6968 |
lmo1709 |
N/A |
-16.64 |
0.048121 |
221 -- 241 |
163 -- 181 |
methionine aminopeptidase |
|
_____________220__________242\n_____________|____________|\n5'-UCA...GAAAU____________AGCAG...CUG-3'\n______________CGAUGAGAUGAA\n______________|:||||||||||\n______________GUUACUCUACUU\n3'-GUU...UGCCG____________ACUUU...GGA-5'\n_____________|____________|\n_____________182__________162\n |
235 -- 241 |
163 -- 169 |
-15.3561 kcal/mol |
3.44721 kcal/mol |
0.694462 kcal/mol |
220 242@LB@ | |@LB@5'-UCA...GAAAU AGCAG...CUG-3'@LB@ CGAUGAGAUGAA@LB@ |:||||||||||@LB@ GUUACUCUACUU@LB@3'-GUU...UGCCG ACUUU...GGA-5'@LB@ | |@LB@ 182 162@LB@@LB@@LB@Energy -16.64 kcal/mol@LB@Hybridization Energy -15.3561 kcal/mol@LB@Unfolding Energy - mRNA 3.44721 kcal/mol@LB@Unfolding Energy - sRNA 0.694462 kcal/mol@LB@@LB@Position - mRNA 221 -- 241@LB@Position - sRNA 163 -- 181@LB@Position Seed - mRNA 235 -- 241@LB@Position Seed - sRNA 163 -- 169@LB@ |
151 |
0.03914 |
0.6976 |
lmo1466 |
N/A |
-16.64 |
0.048271 |
185 -- 226 |
158 -- 202 |
|
|
_____________184_______________________________________________227\n_____________|_________________________________________________|\n5'-UGA...UUAGA____AGA__A_______A_____________________________G_UUGGU...UUC-3'\n______________GAGG___CA_AGAUGUG_AACUA____GCCAA_GA____AAUGGAGA_A\n______________||||___||_|||::||_|||||____|||||_||____||||:|:|_|\n______________CUCC___GU_UCUGUAC_UUGAU____CGGUU_CU____UUACUUUU_U\n3'-GUU...CCCUA_________A_____________GUGC_____A__CUAC________G_UUAUU...GGA-5'\n_____________|_________________________________________________|\n_____________203_______________________________________________157\n |
218 -- 224 |
157 -- 163 |
-27.6675 kcal/mol |
5.9878 kcal/mol |
13.9822 kcal/mol |
184 227@LB@ | |@LB@5'-UGA...UUAGA AGA A A G UUGGU...UUC-3'@LB@ GAGG CA AGAUGUG AACUA GCCAA GA AAUGGAGA A@LB@ |||| || |||::|| ||||| ||||| || ||||:|:| |@LB@ CUCC GU UCUGUAC UUGAU CGGUU CU UUACUUUU U@LB@3'-GUU...CCCUA A GUGC A CUAC G UUAUU...GGA-5'@LB@ | |@LB@ 203 157@LB@@LB@@LB@Energy -16.64 kcal/mol@LB@Hybridization Energy -27.6675 kcal/mol@LB@Unfolding Energy - mRNA 5.9878 kcal/mol@LB@Unfolding Energy - sRNA 13.9822 kcal/mol@LB@@LB@Position - mRNA 185 -- 226@LB@Position - sRNA 158 -- 202@LB@Position Seed - mRNA 218 -- 224@LB@Position Seed - sRNA 157 -- 163@LB@ |
153 |
0.04013 |
0.7027 |
lmo0979 |
N/A |
-16.44 |
0.052648 |
251 -- 296 |
172 -- 207 |
daunorubicin resistance ATP-binding protein |
|
_____________250_____________________________297\n_____________|_______________________________|\n5'-AAU...UUGAA__________UU____G_AAA_______G__AUUU-3'\n______________GGGUGUAGAU__UGAA_U___ACAUGGC_AA\n______________:||::||||:__||||_|___|||:|||_||\n______________UCCGUAUCUG__ACUU_A___UGUGCCG_UU\n3'-GUU...CCUAC__________U_____G___________G__ACUCU...GGA-5'\n_____________|_______________________________|\n_____________208_____________________________171\n |
287 -- 293 |
175 -- 181 |
-27.1075 kcal/mol |
4.53663 kcal/mol |
13.3233 kcal/mol |
250 297@LB@ | |@LB@5'-AAU...UUGAA UU G AAA G AUUU-3'@LB@ GGGUGUAGAU UGAA U ACAUGGC AA@LB@ :||::||||: |||| | |||:||| ||@LB@ UCCGUAUCUG ACUU A UGUGCCG UU@LB@3'-GUU...CCUAC U G G ACUCU...GGA-5'@LB@ | |@LB@ 208 171@LB@@LB@@LB@Energy -16.44 kcal/mol@LB@Hybridization Energy -27.1075 kcal/mol@LB@Unfolding Energy - mRNA 4.53663 kcal/mol@LB@Unfolding Energy - sRNA 13.3233 kcal/mol@LB@@LB@Position - mRNA 251 -- 296@LB@Position - sRNA 172 -- 207@LB@Position Seed - mRNA 287 -- 293@LB@Position Seed - sRNA 175 -- 181@LB@ |
154 |
0.04021 |
0.7027 |
lmo2008 |
N/A |
-17.88 |
0.027453 |
195 -- 258 |
157 -- 220 |
ABC transporter permease |
|
_____________194___________________259\n_____________|_____________________|\n5'-CAG...UGAAG____________AU_______GUCCG...UUG-3'\n______________CAGUGAG_UGAA__AGAACAA\n______________||:||||_||||__|:|||||\n______________GUUACUC_ACUU__UUUUGUU\n3'-GUU...UGCCG_______U____AC_______UAUUA...GGA-5'\n_____________|_____________________|\n_____________221___________________156\n |
233 -- 239 |
154 -- 160 |
-15.5955 kcal/mol |
3.58965 kcal/mol |
0.962339 kcal/mol |
194 259@LB@ | |@LB@5'-CAG...UGAAG AU GUCCG...UUG-3'@LB@ CAGUGAG UGAA AGAACAA@LB@ ||:|||| |||| |:|||||@LB@ GUUACUC ACUU UUUUGUU@LB@3'-GUU...UGCCG U AC UAUUA...GGA-5'@LB@ | |@LB@ 221 156@LB@@LB@@LB@Energy -17.88 kcal/mol@LB@Hybridization Energy -15.5955 kcal/mol@LB@Unfolding Energy - mRNA 3.58965 kcal/mol@LB@Unfolding Energy - sRNA 0.962339 kcal/mol@LB@@LB@Position - mRNA 195 -- 258@LB@Position - sRNA 157 -- 220@LB@Position Seed - mRNA 233 -- 239@LB@Position Seed - sRNA 154 -- 160@LB@ |
155 |
0.04112 |
0.7058 |
lmo1165 |
N/A |
-16.89 |
0.043077 |
88 -- 150 |
155 -- 206 |
ethanolamine utilization protein EutE |
|
_____________87_______________________________151\n_____________|________________________________|\n5'-AAG...AAUGG____________G___C_______G_______UCCAC...CAA-3'\n______________GGAUUA_GCGGC_GAU_AG_UGGA_GAAGAUA\n______________|:|:||_:||||_:||_||_||:|_|||:|:|\n______________CUUGAU_UGCCG_UUA_UC_ACUU_CUUUUGU\n3'-GUU...CUGUA______G_____G___C__U____A_______UUAUU...GGA-5'\n_____________|________________________________|\n_____________207______________________________154\n |
144 -- 150 |
155 -- 161 |
-24.1777 kcal/mol |
5.41964 kcal/mol |
9.66922 kcal/mol |
87 151@LB@ | |@LB@5'-AAG...AAUGG G C G UCCAC...CAA-3'@LB@ GGAUUA GCGGC GAU AG UGGA GAAGAUA@LB@ |:|:|| :|||| :|| || ||:| |||:|:|@LB@ CUUGAU UGCCG UUA UC ACUU CUUUUGU@LB@3'-GUU...CUGUA G G C U A UUAUU...GGA-5'@LB@ | |@LB@ 207 154@LB@@LB@@LB@Energy -16.89 kcal/mol@LB@Hybridization Energy -24.1777 kcal/mol@LB@Unfolding Energy - mRNA 5.41964 kcal/mol@LB@Unfolding Energy - sRNA 9.66922 kcal/mol@LB@@LB@Position - mRNA 88 -- 150@LB@Position - sRNA 155 -- 206@LB@Position Seed - mRNA 144 -- 150@LB@Position Seed - sRNA 155 -- 161@LB@ |