42 |
0.009182 |
0.5883 |
lmo1767 |
purM |
-18.99 |
0.016282 |
211 -- 267 |
155 -- 213 |
phosphoribosylaminoimidazole synthetase |
|
_____________210__________________________________________________________________________268\n_____________|____________________________________________________________________________|\n5'-GGA...ACAAA___AAU___A_AAA_______UA_UAAA_C____________A______________UCA__U_________C___UCAAA...UAG-3'\n______________UCG___GGC_G___AUGCAUA__G____G_AGGCGUGGACGU_GAA__GC_UGGCUA___AG___AGUGGAA_GCA\n______________|||___|||_|___|||||||__|____|_||||:|:|||:|_|||__:|_:|||:|___||___|:||:||_:||\n______________AGC___CCG_C___UACGUAU__C____C_UCCGUAUCUGUA_CUU__UG_GCCGGU___UC___UUACUUU_UGU\n3'-GUU...GUACA___________GGA_______UG_CCUA__________________GA__U______UAC__UAC___________UUAUU...GGA-5'\n_____________|____________________________________________________________________________|\n_____________214__________________________________________________________________________154\n |
257 -- 263 |
158 -- 164 |
-45.9009 kcal/mol |
14.0255 kcal/mol |
22.2914 kcal/mol |
210 268@LB@ | |@LB@5'-GGA...ACAAA AAU A AAA UA UAAA C A UCA U C UCAAA...UAG-3'@LB@ UCG GGC G AUGCAUA G G AGGCGUGGACGU GAA GC UGGCUA AG AGUGGAA GCA@LB@ ||| ||| | ||||||| | | ||||:|:|||:| ||| :| :|||:| || |:||:|| :||@LB@ AGC CCG C UACGUAU C C UCCGUAUCUGUA CUU UG GCCGGU UC UUACUUU UGU@LB@3'-GUU...GUACA GGA UG CCUA GA U UAC UAC UUAUU...GGA-5'@LB@ | |@LB@ 214 154@LB@@LB@@LB@Energy -18.99 kcal/mol@LB@Hybridization Energy -45.9009 kcal/mol@LB@Unfolding Energy - mRNA 14.0255 kcal/mol@LB@Unfolding Energy - sRNA 22.2914 kcal/mol@LB@@LB@Position - mRNA 211 -- 267@LB@Position - sRNA 155 -- 213@LB@Position Seed - mRNA 257 -- 263@LB@Position Seed - sRNA 158 -- 164@LB@ |
148 |
0.03863 |
0.6968 |
lmo1766 |
purN |
-15.06 |
0.094934 |
1 -- 35 |
156 -- 188 |
phosphoribosylglycinamide formyltransferase |
|
______________1__________________________________36\n______________|__________________________________|\n___________5'-_____GAA___________UAAAC_A_________GUAUG...AUA-3'\n______________GUGAA___AUACGGCCAAU_____G_AAUGGAAAU\n______________:||||___|:|||||||||_____|_||||:|||:\n______________UACUU___UGUGCCGGUUA_____C_UUACUUUUG\n3'-GUU...AUCUG_____GA____________CUCUA___________UUUAU...GGA-5'\n_____________|___________________________________|\n_____________189_________________________________155\n |
29 -- 35 |
156 -- 162 |
-25.7257 kcal/mol |
7.32217 kcal/mol |
9.72027 kcal/mol |
1 36@LB@ | |@LB@ 5'- GAA UAAAC A GUAUG...AUA-3'@LB@ GUGAA AUACGGCCAAU G AAUGGAAAU@LB@ :|||| |:||||||||| | ||||:|||:@LB@ UACUU UGUGCCGGUUA C UUACUUUUG@LB@3'-GUU...AUCUG GA CUCUA UUUAU...GGA-5'@LB@ | |@LB@ 189 155@LB@@LB@@LB@Energy -15.06 kcal/mol@LB@Hybridization Energy -25.7257 kcal/mol@LB@Unfolding Energy - mRNA 7.32217 kcal/mol@LB@Unfolding Energy - sRNA 9.72027 kcal/mol@LB@@LB@Position - mRNA 1 -- 35@LB@Position - sRNA 156 -- 188@LB@Position Seed - mRNA 29 -- 35@LB@Position Seed - sRNA 156 -- 162@LB@ |
29 |
0.005638 |
0.5232 |
lmo0014 |
qoxB |
-19.61 |
0.012062 |
164 -- 215 |
168 -- 211 |
AA3-600 quinol oxidase subunit I |
|
_____________163____________216\n_____________|______________|\n5'-CGG...CGCGA_____A________AAAUG...CUU-3'\n______________AGAUG_AAUGAAGA\n______________|||||_||||||:|\n______________UCUAC_UUACUUUU\n3'-GUU...GUUAC______________GUUUA...GGA-5'\n_____________|______________|\n_____________212____________167\n |
111 -- 117 |
157 -- 163 |
-11.9482 kcal/mol |
0.56531 kcal/mol |
0.884237 kcal/mol |
163 216@LB@ | |@LB@5'-CGG...CGCGA A AAAUG...CUU-3'@LB@ AGAUG AAUGAAGA@LB@ ||||| ||||||:|@LB@ UCUAC UUACUUUU@LB@3'-GUU...GUUAC GUUUA...GGA-5'@LB@ | |@LB@ 212 167@LB@@LB@@LB@Energy -19.61 kcal/mol@LB@Hybridization Energy -11.9482 kcal/mol@LB@Unfolding Energy - mRNA 0.56531 kcal/mol@LB@Unfolding Energy - sRNA 0.884237 kcal/mol@LB@@LB@Position - mRNA 164 -- 215@LB@Position - sRNA 168 -- 211@LB@Position Seed - mRNA 111 -- 117@LB@Position Seed - sRNA 157 -- 163@LB@ |
104 |
0.02699 |
0.6733 |
lmo1327 |
rbfA |
-16.36 |
0.054483 |
188 -- 240 |
157 -- 199 |
ribosome-binding factor A |
|
_____________187________________241\n_____________|__________________|\n5'-ACA...CGUGU_______CA_________AAGAA...CUG-3'\n______________CAGUGAG___AAUGAAAA\n______________||:||||___||||||||\n______________GUUACUC___UUACUUUU\n3'-GUU...UGCCG_______UAC________GUUUA...GGA-5'\n_____________|__________________|\n_____________200________________156\n |
234 -- 240 |
157 -- 163 |
-12.7883 kcal/mol |
2.00785 kcal/mol |
0.933292 kcal/mol |
187 241@LB@ | |@LB@5'-ACA...CGUGU CA AAGAA...CUG-3'@LB@ CAGUGAG AAUGAAAA@LB@ ||:|||| ||||||||@LB@ GUUACUC UUACUUUU@LB@3'-GUU...UGCCG UAC GUUUA...GGA-5'@LB@ | |@LB@ 200 156@LB@@LB@@LB@Energy -16.36 kcal/mol@LB@Hybridization Energy -12.7883 kcal/mol@LB@Unfolding Energy - mRNA 2.00785 kcal/mol@LB@Unfolding Energy - sRNA 0.933292 kcal/mol@LB@@LB@Position - mRNA 188 -- 240@LB@Position - sRNA 157 -- 199@LB@Position Seed - mRNA 234 -- 240@LB@Position Seed - sRNA 157 -- 163@LB@ |
92 |
0.02404 |
0.6733 |
lmo1947 |
resE |
-16.63 |
0.048416 |
181 -- 212 |
141 -- 170 |
two-component sensor histidine kinas |
|
_____________180_________________213\n_____________|___________________|\n5'-AAG...ACCGA_______AUA_________UUGGA...UUU-3'\n______________GGUGAGA___GAUGAAGAU\n______________::|||||___:|||||:|:\n______________UUACUCU___UUACUUUUG\n3'-GUU...GCCGG_______AC__________UUUAU...GGA-5'\n_____________|___________________|\n_____________171_________________140\n |
202 -- 208 |
156 -- 162 |
-13.4823 kcal/mol |
2.25638 kcal/mol |
0.941471 kcal/mol |
180 213@LB@ | |@LB@5'-AAG...ACCGA AUA UUGGA...UUU-3'@LB@ GGUGAGA GAUGAAGAU@LB@ ::||||| :|||||:|:@LB@ UUACUCU UUACUUUUG@LB@3'-GUU...GCCGG AC UUUAU...GGA-5'@LB@ | |@LB@ 171 140@LB@@LB@@LB@Energy -16.63 kcal/mol@LB@Hybridization Energy -13.4823 kcal/mol@LB@Unfolding Energy - mRNA 2.25638 kcal/mol@LB@Unfolding Energy - sRNA 0.941471 kcal/mol@LB@@LB@Position - mRNA 181 -- 212@LB@Position - sRNA 141 -- 170@LB@Position Seed - mRNA 202 -- 208@LB@Position Seed - sRNA 156 -- 162@LB@ |
63 |
0.01551 |
0.6624 |
lmo2613 |
rplO |
-17.63 |
0.030853 |
185 -- 213 |
177 -- 203 |
50S ribosomal protein L15 |
|
_____________184______214\n_____________|________|\n5'-AAU...AUUCG________UCACU...GCG-3'\n______________UGGGAUGA\n______________:|||||||\n______________GCCCUACU\n3'-GUU...GUAUU________CCGUA...GGA-5'\n_____________|________|\n_____________204______176\n |
98 -- 104 |
198 -- 204 |
-11.9514 kcal/mol |
5.35707 kcal/mol |
0.374397 kcal/mol |
184 214@LB@ | |@LB@5'-AAU...AUUCG UCACU...GCG-3'@LB@ UGGGAUGA@LB@ :|||||||@LB@ GCCCUACU@LB@3'-GUU...GUAUU CCGUA...GGA-5'@LB@ | |@LB@ 204 176@LB@@LB@@LB@Energy -17.63 kcal/mol@LB@Hybridization Energy -11.9514 kcal/mol@LB@Unfolding Energy - mRNA 5.35707 kcal/mol@LB@Unfolding Energy - sRNA 0.374397 kcal/mol@LB@@LB@Position - mRNA 185 -- 213@LB@Position - sRNA 177 -- 203@LB@Position Seed - mRNA 98 -- 104@LB@Position Seed - sRNA 198 -- 204@LB@ |
159 |
0.04218 |
0.7139 |
lmo1454 |
rpoD |
-16.27 |
0.056776 |
172 -- 217 |
153 -- 211 |
RNA polymerase sigma factor RpoD |
|
_____________171_______________218\n_____________|_________________|\n5'-AGA...GUUAA___G________U____UAAUA...UAA-3'\n______________ACA_CGGCCAAU_GGAU\n______________|||_||||||||_:|||\n______________UGU_GCCGGUUA_UCUA\n3'-GUU...CUUGA____________C____CUUAC...GGA-5'\n_____________|_________________|\n_____________212_______________152\n |
92 -- 98 |
171 -- 177 |
-19.258 kcal/mol |
2.66151 kcal/mol |
6.2749 kcal/mol |
171 218@LB@ | |@LB@5'-AGA...GUUAA G U UAAUA...UAA-3'@LB@ ACA CGGCCAAU GGAU@LB@ ||| |||||||| :|||@LB@ UGU GCCGGUUA UCUA@LB@3'-GUU...CUUGA C CUUAC...GGA-5'@LB@ | |@LB@ 212 152@LB@@LB@@LB@Energy -16.27 kcal/mol@LB@Hybridization Energy -19.258 kcal/mol@LB@Unfolding Energy - mRNA 2.66151 kcal/mol@LB@Unfolding Energy - sRNA 6.2749 kcal/mol@LB@@LB@Position - mRNA 172 -- 217@LB@Position - sRNA 153 -- 211@LB@Position Seed - mRNA 92 -- 98@LB@Position Seed - sRNA 171 -- 177@LB@ |
174 |
0.04903 |
0.7583 |
lmo1615 |
trmB |
-12.39 |
0.264018 |
169 -- 243 |
157 -- 213 |
tRNA (guanine-N(7)-)-methyltransferase |
|
_____________168________________244\n_____________|__________________|\n5'-AAU...AAGAU_________U__A_____AUGCG...AAG-3'\n______________GAUGAGGUG_AA_GAAAG\n______________:|||||:||_||_||||:\n______________UUACUCUAC_UU_CUUUU\n3'-GUU...GCCGG____________A_____GUUUA...GGA-5'\n_____________|__________________|\n_____________214________________156\n |
185 -- 191 |
165 -- 171 |
-13.3606 kcal/mol |
4.29808 kcal/mol |
0.930085 kcal/mol |
168 244@LB@ | |@LB@5'-AAU...AAGAU U A AUGCG...AAG-3'@LB@ GAUGAGGUG AA GAAAG@LB@ :|||||:|| || ||||:@LB@ UUACUCUAC UU CUUUU@LB@3'-GUU...GCCGG A GUUUA...GGA-5'@LB@ | |@LB@ 214 156@LB@@LB@@LB@Energy -12.39 kcal/mol@LB@Hybridization Energy -13.3606 kcal/mol@LB@Unfolding Energy - mRNA 4.29808 kcal/mol@LB@Unfolding Energy - sRNA 0.930085 kcal/mol@LB@@LB@Position - mRNA 169 -- 243@LB@Position - sRNA 157 -- 213@LB@Position Seed - mRNA 185 -- 191@LB@Position Seed - sRNA 165 -- 171@LB@ |
185 |
0.05367 |
0.7607 |
lmo1631 |
trpD |
-14.92 |
0.100424 |
142 -- 163 |
148 -- 170 |
anthranilate phosphoribosyltransferase |
|
_____________141__________________164\n_____________|____________________|\n5'-UUC...UACGA____CG______________GAAAA...AAA-3'\n______________AUGA__GAAAACAAAUGAUG\n______________||||__||||||||||:|||\n______________UACU__CUUUUGUUUAUUAC\n3'-GUU...UACUC____UA______________UAAAA...GGA-5'\n_____________|____________________|\n_____________171__________________147\n |
153 -- 159 |
152 -- 158 |
-19.3831 kcal/mol |
2.89443 kcal/mol |
5.80116 kcal/mol |
141 164@LB@ | |@LB@5'-UUC...UACGA CG GAAAA...AAA-3'@LB@ AUGA GAAAACAAAUGAUG@LB@ |||| ||||||||||:|||@LB@ UACU CUUUUGUUUAUUAC@LB@3'-GUU...UACUC UA UAAAA...GGA-5'@LB@ | |@LB@ 171 147@LB@@LB@@LB@Energy -14.92 kcal/mol@LB@Hybridization Energy -19.3831 kcal/mol@LB@Unfolding Energy - mRNA 2.89443 kcal/mol@LB@Unfolding Energy - sRNA 5.80116 kcal/mol@LB@@LB@Position - mRNA 142 -- 163@LB@Position - sRNA 148 -- 170@LB@Position Seed - mRNA 153 -- 159@LB@Position Seed - sRNA 152 -- 158@LB@ |
179 |
0.05074 |
0.7607 |
lmo1598 |
tyrS |
-15.93 |
0.065557 |
245 -- 292 |
152 -- 211 |
tyrosyl-tRNA synthetase |
|
_____________244_______________293\n_____________|_________________|\n5'-UAG...AAAAG____AU___________AUAUU...UGU-3'\n______________GAGA__GAUGAAAAUGA\n______________||||__:|||||||::|\n______________CUCU__UUACUUUUGUU\n3'-GUU...GGUUA____AC___________UAUUA...GGA-5'\n_____________|_________________|\n_____________212_______________151\n |
197 -- 203 |
155 -- 161 |
-12.3519 kcal/mol |
1.69495 kcal/mol |
0.933796 kcal/mol |
244 293@LB@ | |@LB@5'-UAG...AAAAG AU AUAUU...UGU-3'@LB@ GAGA GAUGAAAAUGA@LB@ |||| :|||||||::|@LB@ CUCU UUACUUUUGUU@LB@3'-GUU...GGUUA AC UAUUA...GGA-5'@LB@ | |@LB@ 212 151@LB@@LB@@LB@Energy -15.93 kcal/mol@LB@Hybridization Energy -12.3519 kcal/mol@LB@Unfolding Energy - mRNA 1.69495 kcal/mol@LB@Unfolding Energy - sRNA 0.933796 kcal/mol@LB@@LB@Position - mRNA 245 -- 292@LB@Position - sRNA 152 -- 211@LB@Position Seed - mRNA 197 -- 203@LB@Position Seed - sRNA 155 -- 161@LB@ |