12 |
0.002933 |
0.4469 |
lmo1952 |
lysA |
-19.68 |
0.011630 |
182 -- 245 |
154 -- 213 |
diaminopimelate decarboxylase |
|
_____________181___________________________________________________________246\n_____________|_____________________________________________________________|\n5'-UUG...CUAUA_____AAGG______U__________________A______UG___ACA_______U____GCAGA...CGC-3'\n______________AUGUA____UGGGAU__GGCGU_GACGU___UUG_ACGGCU___GA___AUGAAUG_AAAU\n______________|||:|____:|||||__|||:|_|||:|___:|:_|||||:___||___|||||||_|||:\n______________UACGU____GCCCUA__CCGUA_CUGUA___GAU_UGCCGG___CU___UACUUAC_UUUG\n3'-GUU...GCGGA_____AUU_______CU_____U_____CUU___G______UUA__C_________U____UUUAU...GGA-5'\n_____________|_____________________________________________________________|\n_____________214___________________________________________________________153\n |
225 -- 231 |
161 -- 167 |
-39.877 kcal/mol |
10.395 kcal/mol |
19.5834 kcal/mol |
181 246@LB@ | |@LB@5'-UUG...CUAUA AAGG U A UG ACA U GCAGA...CGC-3'@LB@ AUGUA UGGGAU GGCGU GACGU UUG ACGGCU GA AUGAAUG AAAU@LB@ |||:| :||||| |||:| |||:| :|: |||||: || ||||||| |||:@LB@ UACGU GCCCUA CCGUA CUGUA GAU UGCCGG CU UACUUAC UUUG@LB@3'-GUU...GCGGA AUU CU U CUU G UUA C U UUUAU...GGA-5'@LB@ | |@LB@ 214 153@LB@@LB@@LB@Energy -19.68 kcal/mol@LB@Hybridization Energy -39.877 kcal/mol@LB@Unfolding Energy - mRNA 10.395 kcal/mol@LB@Unfolding Energy - sRNA 19.5834 kcal/mol@LB@@LB@Position - mRNA 182 -- 245@LB@Position - sRNA 154 -- 213@LB@Position Seed - mRNA 225 -- 231@LB@Position Seed - sRNA 161 -- 167@LB@ |
16 |
0.003215 |
0.4469 |
lmo1403 |
mutS |
-20.74 |
0.006867 |
183 -- 222 |
169 -- 209 |
DNA mismatch repair protein MutS |
|
_____________182________________223\n_____________|__________________|\n5'-ACG...UGCUA__________________AGAAG...UGU-3'\n______________UAAUGAGA_GGAUGAAAA\n______________:|||||||_|:|||||||\n______________GUUACUCU_CUUACUUUU\n3'-GUU...UGCCG________A_________GUUUA...GGA-5'\n_____________|__________________|\n_____________210________________168\n |
172 -- 178 |
157 -- 163 |
-16.7756 kcal/mol |
1.79354 kcal/mol |
0.933292 kcal/mol |
182 223@LB@ | |@LB@5'-ACG...UGCUA AGAAG...UGU-3'@LB@ UAAUGAGA GGAUGAAAA@LB@ :||||||| |:|||||||@LB@ GUUACUCU CUUACUUUU@LB@3'-GUU...UGCCG A GUUUA...GGA-5'@LB@ | |@LB@ 210 168@LB@@LB@@LB@Energy -20.74 kcal/mol@LB@Hybridization Energy -16.7756 kcal/mol@LB@Unfolding Energy - mRNA 1.79354 kcal/mol@LB@Unfolding Energy - sRNA 0.933292 kcal/mol@LB@@LB@Position - mRNA 183 -- 222@LB@Position - sRNA 169 -- 209@LB@Position Seed - mRNA 172 -- 178@LB@Position Seed - sRNA 157 -- 163@LB@ |
1 |
1.731e-05 |
0.04657 |
lmo1883 |
N/A |
-26.54 |
0.000269 |
199 -- 265 |
114 -- 169 |
chitinase |
|
_____________198_________________________________________________________________266\n_____________|___________________________________________________________________|\n5'-GCG...AAAGU________G_________________GG___UU_____UU__UUUUAGUU____CGG______GG__AUUUG...ACG-3'\n______________AGAUGAAU_GAAAACAAGUAAUGGUU__UGG__UGUCU__AC________GGUG___GACUGG__GC\n______________||||||||_||||||||:|||||:||__|||__|||||__||________|:||___||||:|__||\n______________UCUACUUA_CUUUUGUUUAUUACUAA__ACC__ACAGA__UG________CUAC___CUGAUC__CG\n3'-GUU...GUUAC__________________________A___________UU__U___________AGA______AA__GUAAG...GGA-5'\n_____________|___________________________________________________________________|\n_____________170_________________________________________________________________113\n |
210 -- 216 |
153 -- 159 |
-51.3221 kcal/mol |
15.9506 kcal/mol |
18.5045 kcal/mol |
198 266@LB@ | |@LB@5'-GCG...AAAGU G GG UU UU UUUUAGUU CGG GG AUUUG...ACG-3'@LB@ AGAUGAAU GAAAACAAGUAAUGGUU UGG UGUCU AC GGUG GACUGG GC@LB@ |||||||| ||||||||:|||||:|| ||| ||||| || |:|| ||||:| ||@LB@ UCUACUUA CUUUUGUUUAUUACUAA ACC ACAGA UG CUAC CUGAUC CG@LB@3'-GUU...GUUAC A UU U AGA AA GUAAG...GGA-5'@LB@ | |@LB@ 170 113@LB@@LB@@LB@Energy -26.54 kcal/mol@LB@Hybridization Energy -51.3221 kcal/mol@LB@Unfolding Energy - mRNA 15.9506 kcal/mol@LB@Unfolding Energy - sRNA 18.5045 kcal/mol@LB@@LB@Position - mRNA 199 -- 265@LB@Position - sRNA 114 -- 169@LB@Position Seed - mRNA 210 -- 216@LB@Position Seed - sRNA 153 -- 159@LB@ |
2 |
0.0002774 |
0.3688 |
lmo1666 |
N/A |
-21.94 |
0.003684 |
151 -- 207 |
157 -- 207 |
peptidoglycan-linked protein |
lmo0333 |
_____________150____________208\n_____________|______________|\n5'-GUG...AGAUG______________GUAAA...CUC-3'\n______________GGGAUGAAUGAAAA\n______________|:||||||||||||\n______________CUCUACUUACUUUU\n3'-GUU...GGUUA______________GUUUA...GGA-5'\n_____________|______________|\n_____________208____________156\n |
201 -- 207 |
157 -- 163 |
-18.267 kcal/mol |
1.529 kcal/mol |
0.904482 kcal/mol |
150 208@LB@ | |@LB@5'-GUG...AGAUG GUAAA...CUC-3'@LB@ GGGAUGAAUGAAAA@LB@ |:||||||||||||@LB@ CUCUACUUACUUUU@LB@3'-GUU...GGUUA GUUUA...GGA-5'@LB@ | |@LB@ 208 156@LB@@LB@@LB@Energy -21.94 kcal/mol@LB@Hybridization Energy -18.267 kcal/mol@LB@Unfolding Energy - mRNA 1.529 kcal/mol@LB@Unfolding Energy - sRNA 0.904482 kcal/mol@LB@@LB@Position - mRNA 151 -- 207@LB@Position - sRNA 157 -- 207@LB@Position Seed - mRNA 201 -- 207@LB@Position Seed - sRNA 157 -- 163@LB@ |
3 |
0.0004111 |
0.3688 |
lmo0196 |
N/A |
-23.83 |
0.001321 |
198 -- 256 |
156 -- 209 |
regulatory protein SpoVG |
|
_____________197________________257\n_____________|__________________|\n5'-ACU...AGACA__________________UAUUU...ACA-3'\n______________GAUGGGA_GAAUGAAAGC\n______________:|||:||_||||||||:|\n______________UUACUCU_CUUACUUUUG\n3'-GUU...GCCGG_______A__________UUUAU...GGA-5'\n_____________|__________________|\n_____________210________________155\n |
250 -- 256 |
156 -- 162 |
-19.3926 kcal/mol |
2.92904 kcal/mol |
0.941471 kcal/mol |
197 257@LB@ | |@LB@5'-ACU...AGACA UAUUU...ACA-3'@LB@ GAUGGGA GAAUGAAAGC@LB@ :|||:|| ||||||||:|@LB@ UUACUCU CUUACUUUUG@LB@3'-GUU...GCCGG A UUUAU...GGA-5'@LB@ | |@LB@ 210 155@LB@@LB@@LB@Energy -23.83 kcal/mol@LB@Hybridization Energy -19.3926 kcal/mol@LB@Unfolding Energy - mRNA 2.92904 kcal/mol@LB@Unfolding Energy - sRNA 0.941471 kcal/mol@LB@@LB@Position - mRNA 198 -- 256@LB@Position - sRNA 156 -- 209@LB@Position Seed - mRNA 250 -- 256@LB@Position Seed - sRNA 156 -- 162@LB@ |
4 |
0.0009641 |
0.4469 |
lmo0851 |
N/A |
-23.35 |
0.001728 |
188 -- 220 |
172 -- 201 |
lmo0851 |
|
_____________187_______________________________221\n_____________|_________________________________|\n5'-GGU...AUAGA__________U_______AAAAGAA________CCAAC...UAA-3'\n______________GUGAGGCAUA_ACAUGAA_______GCGGUUAA\n______________:|||||||||_|||||||_______:|||::||\n______________UACUCCGUAU_UGUACUU_______UGCCGGUU\n3'-GUU...UGCCC__________C_______GAUG___________ACUCU...GGA-5'\n_____________|_________________________________|\n_____________202_______________________________171\n |
214 -- 220 |
172 -- 178 |
-33.261 kcal/mol |
3.18896 kcal/mol |
13.3764 kcal/mol |
187 221@LB@ | |@LB@5'-GGU...AUAGA U AAAAGAA CCAAC...UAA-3'@LB@ GUGAGGCAUA ACAUGAA GCGGUUAA@LB@ :||||||||| ||||||| :|||::||@LB@ UACUCCGUAU UGUACUU UGCCGGUU@LB@3'-GUU...UGCCC C GAUG ACUCU...GGA-5'@LB@ | |@LB@ 202 171@LB@@LB@@LB@Energy -23.35 kcal/mol@LB@Hybridization Energy -33.261 kcal/mol@LB@Unfolding Energy - mRNA 3.18896 kcal/mol@LB@Unfolding Energy - sRNA 13.3764 kcal/mol@LB@@LB@Position - mRNA 188 -- 220@LB@Position - sRNA 172 -- 201@LB@Position Seed - mRNA 214 -- 220@LB@Position Seed - sRNA 172 -- 178@LB@ |
6 |
0.001395 |
0.4469 |
lmo2078 |
N/A |
-19.77 |
0.011149 |
188 -- 240 |
154 -- 207 |
|
|
_____________187___________________________________________________________________241\n_____________|_____________________________________________________________________|\n5'-GAU...UUUAU_____C______U__________U____UA____________AAUG____A_G________________UUCGA...AGG-3'\n______________UUUGG_GCGUCU_UGU_____GG_AUGA__UGUAGA___GAA____AUGG_C_GGUGAGGU_AAUGGAA\n______________||:||_|||:||_||:_____||_||||__::||||___|||____|:||_|_::||||:|_||||:||\n______________AAGCC_CGCGGA_ACG_____CC_UACU__GUAUCU___CUU____UGCC_G_UUACUCUA_UUACUUU\n3'-GUU...AGUAC____________U___UAUUG__C____CC______GUA___GAUG______G________C_______UGUUU...GGA-5'\n_____________|_____________________________________________________________________|\n_____________208___________________________________________________________________153\n |
200 -- 206 |
158 -- 164 |
-46.039 kcal/mol |
12.924 kcal/mol |
22.2029 kcal/mol |
187 241@LB@ | |@LB@5'-GAU...UUUAU C U U UA AAUG A G UUCGA...AGG-3'@LB@ UUUGG GCGUCU UGU GG AUGA UGUAGA GAA AUGG C GGUGAGGU AAUGGAA@LB@ ||:|| |||:|| ||: || |||| ::|||| ||| |:|| | ::||||:| ||||:||@LB@ AAGCC CGCGGA ACG CC UACU GUAUCU CUU UGCC G UUACUCUA UUACUUU@LB@3'-GUU...AGUAC U UAUUG C CC GUA GAUG G C UGUUU...GGA-5'@LB@ | |@LB@ 208 153@LB@@LB@@LB@Energy -19.77 kcal/mol@LB@Hybridization Energy -46.039 kcal/mol@LB@Unfolding Energy - mRNA 12.924 kcal/mol@LB@Unfolding Energy - sRNA 22.2029 kcal/mol@LB@@LB@Position - mRNA 188 -- 240@LB@Position - sRNA 154 -- 207@LB@Position Seed - mRNA 200 -- 206@LB@Position Seed - sRNA 158 -- 164@LB@ |
7 |
0.001816 |
0.4469 |
lmo1666 |
N/A |
-21.94 |
0.003684 |
151 -- 207 |
157 -- 207 |
peptidoglycan-linked protein |
lmo0333 |
_____________150____________208\n_____________|______________|\n5'-GUG...AGAUG______________GUAAA...CUC-3'\n______________GGGAUGAAUGAAAA\n______________|:||||||||||||\n______________CUCUACUUACUUUU\n3'-GUU...GGUUA______________GUUUA...GGA-5'\n_____________|______________|\n_____________208____________156\n |
201 -- 207 |
157 -- 163 |
-18.267 kcal/mol |
1.529 kcal/mol |
0.904482 kcal/mol |
150 208@LB@ | |@LB@5'-GUG...AGAUG GUAAA...CUC-3'@LB@ GGGAUGAAUGAAAA@LB@ |:||||||||||||@LB@ CUCUACUUACUUUU@LB@3'-GUU...GGUUA GUUUA...GGA-5'@LB@ | |@LB@ 208 156@LB@@LB@@LB@Energy -21.94 kcal/mol@LB@Hybridization Energy -18.267 kcal/mol@LB@Unfolding Energy - mRNA 1.529 kcal/mol@LB@Unfolding Energy - sRNA 0.904482 kcal/mol@LB@@LB@Position - mRNA 151 -- 207@LB@Position - sRNA 157 -- 207@LB@Position Seed - mRNA 201 -- 207@LB@Position Seed - sRNA 157 -- 163@LB@ |
8 |
0.001816 |
0.4469 |
lmo1666 |
N/A |
-21.94 |
0.003684 |
151 -- 207 |
157 -- 207 |
peptidoglycan-linked protein |
lmo0333 |
_____________150____________208\n_____________|______________|\n5'-GUG...AGAUG______________GUAAA...CUC-3'\n______________GGGAUGAAUGAAAA\n______________|:||||||||||||\n______________CUCUACUUACUUUU\n3'-GUU...GGUUA______________GUUUA...GGA-5'\n_____________|______________|\n_____________208____________156\n |
201 -- 207 |
157 -- 163 |
-18.267 kcal/mol |
1.529 kcal/mol |
0.904482 kcal/mol |
150 208@LB@ | |@LB@5'-GUG...AGAUG GUAAA...CUC-3'@LB@ GGGAUGAAUGAAAA@LB@ |:||||||||||||@LB@ CUCUACUUACUUUU@LB@3'-GUU...GGUUA GUUUA...GGA-5'@LB@ | |@LB@ 208 156@LB@@LB@@LB@Energy -21.94 kcal/mol@LB@Hybridization Energy -18.267 kcal/mol@LB@Unfolding Energy - mRNA 1.529 kcal/mol@LB@Unfolding Energy - sRNA 0.904482 kcal/mol@LB@@LB@Position - mRNA 151 -- 207@LB@Position - sRNA 157 -- 207@LB@Position Seed - mRNA 201 -- 207@LB@Position Seed - sRNA 157 -- 163@LB@ |
9 |
0.002066 |
0.4469 |
lmo0669 |
N/A |
-20.91 |
0.006284 |
33 -- 77 |
156 -- 211 |
oxidoreductase |
|
_____________32__________________78\n_____________|___________________|\n5'-AAU...UAAAG___________________GGGAA...UUC-3'\n______________UAAUGGGG_GGAUGAAAAU\n______________:||||:|:_|:|||||||:\n______________GUUACUCU_CUUACUUUUG\n3'-GUU...UGCCG________A__________UUUAU...GGA-5'\n_____________|___________________|\n_____________212_________________155\n |
71 -- 77 |
156 -- 162 |
-16.6504 kcal/mol |
2.4241 kcal/mol |
0.944687 kcal/mol |
32 78@LB@ | |@LB@5'-AAU...UAAAG GGGAA...UUC-3'@LB@ UAAUGGGG GGAUGAAAAU@LB@ :||||:|: |:|||||||:@LB@ GUUACUCU CUUACUUUUG@LB@3'-GUU...UGCCG A UUUAU...GGA-5'@LB@ | |@LB@ 212 155@LB@@LB@@LB@Energy -20.91 kcal/mol@LB@Hybridization Energy -16.6504 kcal/mol@LB@Unfolding Energy - mRNA 2.4241 kcal/mol@LB@Unfolding Energy - sRNA 0.944687 kcal/mol@LB@@LB@Position - mRNA 33 -- 77@LB@Position - sRNA 156 -- 211@LB@Position Seed - mRNA 71 -- 77@LB@Position Seed - sRNA 156 -- 162@LB@ |