| 44 |
0.009138 |
0.5385 |
b4148 |
sugE |
-12.73 |
0.035076 |
273 -- 288 |
62 -- 77 |
multidrug efflux system protein |
|
_____________272______________289\n_____________|________________|\n5'-CGC...CCCAC_________C______CGCCG...UUA-3'\n______________GGCUUUAGU_GUUUGA\n______________|||||||||_:||:||\n______________CCGAAAUCA_UAAGCU\n3'-CGC...UGCAA_________A______CAACU...AAG-5'\n_____________|________________|\n_____________78_______________61\n |
275 -- 281 |
69 -- 75 |
-18.0703 kcal/mol |
4.60455 kcal/mol |
0.736118 kcal/mol |
272 289@LB@ | |@LB@5'-CGC...CCCAC C CGCCG...UUA-3'@LB@ GGCUUUAGU GUUUGA@LB@ ||||||||| :||:||@LB@ CCGAAAUCA UAAGCU@LB@3'-CGC...UGCAA A CAACU...AAG-5'@LB@ | |@LB@ 78 61@LB@@LB@@LB@Energy -12.73 kcal/mol@LB@Hybridization Energy -18.0703 kcal/mol@LB@Unfolding Energy - mRNA 4.60455 kcal/mol@LB@Unfolding Energy - sRNA 0.736118 kcal/mol@LB@@LB@Position - mRNA 273 -- 288@LB@Position - sRNA 62 -- 77@LB@Position Seed - mRNA 275 -- 281@LB@Position Seed - sRNA 69 -- 75@LB@ |
| 126 |
0.02177 |
0.5385 |
b4162 |
orn |
-9.93 |
0.108535 |
62 -- 89 |
61 -- 86 |
oligoribonuclease |
|
_____________61___________________________90\n_____________|____________________________|\n5'-ACA...UUGGC_______CG_C___GC___CCU__G___AGUUU...CCG-3'\n______________GUUCACG__G_GCU__UGG___UU_GAG\n______________|||||||__|_|||__|:|___||_|||\n______________CAAGUGC__C_CGA__AUC___AA_CUC\n3'-CGC...GUUUU_______AA_____A____AAU__G___AACUC...AAG-5'\n_____________|____________________________|\n_____________87___________________________60\n |
62 -- 68 |
80 -- 86 |
-20.598 kcal/mol |
8.95458 kcal/mol |
1.70915 kcal/mol |
61 90@LB@ | |@LB@5'-ACA...UUGGC CG C GC CCU G AGUUU...CCG-3'@LB@ GUUCACG G GCU UGG UU GAG@LB@ ||||||| | ||| |:| || |||@LB@ CAAGUGC C CGA AUC AA CUC@LB@3'-CGC...GUUUU AA A AAU G AACUC...AAG-5'@LB@ | |@LB@ 87 60@LB@@LB@@LB@Energy -9.93 kcal/mol@LB@Hybridization Energy -20.598 kcal/mol@LB@Unfolding Energy - mRNA 8.95458 kcal/mol@LB@Unfolding Energy - sRNA 1.70915 kcal/mol@LB@@LB@Position - mRNA 62 -- 89@LB@Position - sRNA 61 -- 86@LB@Position Seed - mRNA 62 -- 68@LB@Position Seed - sRNA 80 -- 86@LB@ |
| 154 |
0.02609 |
0.5541 |
b4195 |
ulaC |
-15.85 |
0.009707 |
6 -- 31 |
56 -- 80 |
L-ascorbate-specific enzyme IIA component of PTS |
|
_____________5__________________________32\n_____________|__________________________|\n______5'-GCGCG______GAGUACAAAAG_________UGGCG...UGG-3'\n______________GUUGGC___________CGAGUUGAG\n______________||||||___________|||||||||\n______________CAACCG___________GCUCAACUC\n3'-CGC...AAGUG______AAAUCAAUAA__________UUUGA...AAG-5'\n_____________|__________________________|\n_____________81_________________________55\n |
25 -- 31 |
56 -- 62 |
-23.4839 kcal/mol |
5.91355 kcal/mol |
1.71557 kcal/mol |
5 32@LB@ | |@LB@ 5'-GCGCG GAGUACAAAAG UGGCG...UGG-3'@LB@ GUUGGC CGAGUUGAG@LB@ |||||| |||||||||@LB@ CAACCG GCUCAACUC@LB@3'-CGC...AAGUG AAAUCAAUAA UUUGA...AAG-5'@LB@ | |@LB@ 81 55@LB@@LB@@LB@Energy -15.85 kcal/mol@LB@Hybridization Energy -23.4839 kcal/mol@LB@Unfolding Energy - mRNA 5.91355 kcal/mol@LB@Unfolding Energy - sRNA 1.71557 kcal/mol@LB@@LB@Position - mRNA 6 -- 31@LB@Position - sRNA 56 -- 80@LB@Position Seed - mRNA 25 -- 31@LB@Position Seed - sRNA 56 -- 62@LB@ |
| 94 |
0.01616 |
0.5385 |
b4217 |
ytfK |
-8.94 |
0.160287 |
283 -- 290 |
75 -- 82 |
DUF1107 family protein |
|
_____________282______291\n_____________|________|\n5'-GAA...CAAGG________GCUUU...AAU-3'\n______________ACGUUGGC\n______________||||||||\n______________UGCAACCG\n3'-CGC...UCAAG________AAAUC...AAG-5'\n_____________|________|\n_____________83_______74\n |
284 -- 290 |
75 -- 81 |
-13.4875 kcal/mol |
4.21202 kcal/mol |
0.339284 kcal/mol |
282 291@LB@ | |@LB@5'-GAA...CAAGG GCUUU...AAU-3'@LB@ ACGUUGGC@LB@ ||||||||@LB@ UGCAACCG@LB@3'-CGC...UCAAG AAAUC...AAG-5'@LB@ | |@LB@ 83 74@LB@@LB@@LB@Energy -8.94 kcal/mol@LB@Hybridization Energy -13.4875 kcal/mol@LB@Unfolding Energy - mRNA 4.21202 kcal/mol@LB@Unfolding Energy - sRNA 0.339284 kcal/mol@LB@@LB@Position - mRNA 283 -- 290@LB@Position - sRNA 75 -- 82@LB@Position Seed - mRNA 284 -- 290@LB@Position Seed - sRNA 75 -- 81@LB@ |
| 163 |
0.02879 |
0.5559 |
b4244 |
pyrI |
-5.82 |
0.477897 |
276 -- 293 |
60 -- 77 |
aspartate carbamoyltransferase regulatory subunit |
|
_____________275________________294\n_____________|__________________|\n5'-UUC...AGAUC_______AGCUG______CUGUUCA-3'\n______________GGUUUUA_____UUGAGU\n______________||:||||_____|:||||\n______________CCGAAAU_____AGCUCA\n3'-CGC...UGCAA_______CAAUA______ACUCU...AAG-5'\n_____________|__________________|\n_____________78_________________59\n |
276 -- 282 |
71 -- 77 |
-12.7499 kcal/mol |
6.13118 kcal/mol |
0.796465 kcal/mol |
275 294@LB@ | |@LB@5'-UUC...AGAUC AGCUG CUGUUCA-3'@LB@ GGUUUUA UUGAGU@LB@ ||:|||| |:||||@LB@ CCGAAAU AGCUCA@LB@3'-CGC...UGCAA CAAUA ACUCU...AAG-5'@LB@ | |@LB@ 78 59@LB@@LB@@LB@Energy -5.82 kcal/mol@LB@Hybridization Energy -12.7499 kcal/mol@LB@Unfolding Energy - mRNA 6.13118 kcal/mol@LB@Unfolding Energy - sRNA 0.796465 kcal/mol@LB@@LB@Position - mRNA 276 -- 293@LB@Position - sRNA 60 -- 77@LB@Position Seed - mRNA 276 -- 282@LB@Position Seed - sRNA 71 -- 77@LB@ |
| 135 |
0.02294 |
0.5385 |
b4254 |
argI |
-11.70 |
0.053356 |
4 -- 33 |
59 -- 85 |
ornithine carbamoyltransferase 1 |
b0273 |
_____________3______________________________34\n_____________|______________________________|\n________5'-UUC______C__UU___CC________C_____UGCCA...AUA-3'\n______________UUCACG_UG__CUU__AGUUGUUC_GGGUU\n______________||||||_||__|||__||||:|||_|:|||\n______________AAGUGC_AC__GAA__UCAAUAAG_CUCAA\n3'-CGC...UUUUC______A__C____A_______________CUCUU...AAG-5'\n_____________|______________________________|\n_____________86_____________________________58\n |
21 -- 27 |
64 -- 70 |
-19.7051 kcal/mol |
6.29613 kcal/mol |
1.70749 kcal/mol |
3 34@LB@ | |@LB@ 5'-UUC C UU CC C UGCCA...AUA-3'@LB@ UUCACG UG CUU AGUUGUUC GGGUU@LB@ |||||| || ||| ||||:||| |:|||@LB@ AAGUGC AC GAA UCAAUAAG CUCAA@LB@3'-CGC...UUUUC A C A CUCUU...AAG-5'@LB@ | |@LB@ 86 58@LB@@LB@@LB@Energy -11.70 kcal/mol@LB@Hybridization Energy -19.7051 kcal/mol@LB@Unfolding Energy - mRNA 6.29613 kcal/mol@LB@Unfolding Energy - sRNA 1.70749 kcal/mol@LB@@LB@Position - mRNA 4 -- 33@LB@Position - sRNA 59 -- 85@LB@Position Seed - mRNA 21 -- 27@LB@Position Seed - sRNA 64 -- 70@LB@ |
| 80 |
0.01445 |
0.5385 |
b4257 |
yjgN |
-10.51 |
0.086376 |
202 -- 215 |
65 -- 78 |
DUF898 family inner membrane protein |
|
_____________201____________216\n_____________|______________|\n5'-UUA...UUUUA_____CA_______AAUGA...UGU-3'\n______________UGGCU__AGUUAUU\n______________|||||__|||||||\n______________ACCGA__UCAAUAA\n3'-CGC...GUGCA_____AA_______GCUCA...AAG-5'\n_____________|______________|\n_____________79_____________64\n |
209 -- 215 |
65 -- 71 |
-13.5706 kcal/mol |
2.80573 kcal/mol |
0.256929 kcal/mol |
201 216@LB@ | |@LB@5'-UUA...UUUUA CA AAUGA...UGU-3'@LB@ UGGCU AGUUAUU@LB@ ||||| |||||||@LB@ ACCGA UCAAUAA@LB@3'-CGC...GUGCA AA GCUCA...AAG-5'@LB@ | |@LB@ 79 64@LB@@LB@@LB@Energy -10.51 kcal/mol@LB@Hybridization Energy -13.5706 kcal/mol@LB@Unfolding Energy - mRNA 2.80573 kcal/mol@LB@Unfolding Energy - sRNA 0.256929 kcal/mol@LB@@LB@Position - mRNA 202 -- 215@LB@Position - sRNA 65 -- 78@LB@Position Seed - mRNA 209 -- 215@LB@Position Seed - sRNA 65 -- 71@LB@ |
| 130 |
0.02238 |
0.5385 |
b4365 |
yjjQ |
-17.31 |
0.005324 |
260 -- 274 |
14 -- 28 |
putative transcriptional regulator |
|
_____________259_____________275\n_____________|_______________|\n5'-AGG...CAAGC_______________CAUGA...AUG-3'\n______________AGGGUUAAAAGAGGU\n______________|||||||||||||||\n______________UCCCAAUUUUCUCCA\n3'-CGC...GAAGU_______________CGGCG...AAG-5'\n_____________|_______________|\n_____________29______________13\n |
268 -- 274 |
14 -- 20 |
-23.2971 kcal/mol |
2.73817 kcal/mol |
3.24497 kcal/mol |
259 275@LB@ | |@LB@5'-AGG...CAAGC CAUGA...AUG-3'@LB@ AGGGUUAAAAGAGGU@LB@ |||||||||||||||@LB@ UCCCAAUUUUCUCCA@LB@3'-CGC...GAAGU CGGCG...AAG-5'@LB@ | |@LB@ 29 13@LB@@LB@@LB@Energy -17.31 kcal/mol@LB@Hybridization Energy -23.2971 kcal/mol@LB@Unfolding Energy - mRNA 2.73817 kcal/mol@LB@Unfolding Energy - sRNA 3.24497 kcal/mol@LB@@LB@Position - mRNA 260 -- 274@LB@Position - sRNA 14 -- 28@LB@Position Seed - mRNA 268 -- 274@LB@Position Seed - sRNA 14 -- 20@LB@ |
| 183 |
0.03203 |
0.5559 |
b4484 |
cpxP |
-9.38 |
0.135070 |
107 -- 120 |
71 -- 85 |
inhibitor of the cpx response; periplasmic adaptor protein |
|
_____________106_____________121\n_____________|_______________|\n5'-UAA...AUGAC_______________CACCC...GUG-3'\n______________UUUACGUUG_UUUUA\n______________||:||||||_:||||\n______________AAGUGCAAC_GAAAU\n3'-CGC...UUUUC_________C_____CAAUA...AAG-5'\n_____________|_______________|\n_____________86______________70\n |
109 -- 115 |
77 -- 83 |
-11.4265 kcal/mol |
1.48788 kcal/mol |
0.560731 kcal/mol |
106 121@LB@ | |@LB@5'-UAA...AUGAC CACCC...GUG-3'@LB@ UUUACGUUG UUUUA@LB@ ||:|||||| :||||@LB@ AAGUGCAAC GAAAU@LB@3'-CGC...UUUUC C CAAUA...AAG-5'@LB@ | |@LB@ 86 70@LB@@LB@@LB@Energy -9.38 kcal/mol@LB@Hybridization Energy -11.4265 kcal/mol@LB@Unfolding Energy - mRNA 1.48788 kcal/mol@LB@Unfolding Energy - sRNA 0.560731 kcal/mol@LB@@LB@Position - mRNA 107 -- 120@LB@Position - sRNA 71 -- 85@LB@Position Seed - mRNA 109 -- 115@LB@Position Seed - sRNA 77 -- 83@LB@ |
| 122 |
0.02068 |
0.5385 |
b4529 |
ydbJ |
-12.93 |
0.032363 |
174 -- 233 |
8 -- 79 |
DUF333 family putative lipoprotein |
|
_____________173_______________________________________________________________________234\n_____________|_________________________________________________________________________|\n5'-GCA...GUCGU_______GAA________UCA______GAAAA__U___A____C____________________U________UUAUU...GUU-3'\n______________UUGGCUU_________GA___GAGGAA_____GA_GCG_GCAG_G_UUUU__GGGU____AGGG_GUGCCGCU\n______________|||||||_________||___|||:||_____||_:||_||||_|_:||:__||||____||:|_||||||||\n______________AACCGAA_________CU___CUCUUU_____CU_UGC_CGUC_C_GAAG__CCCA____UCUC_CACGGCGA\n3'-CGC...AGUGC_______AUCAAUAAG__CAA______GAGAG__U___C____A_U____UU____AUUU_____________GGCAAAG-5'\n_____________|_________________________________________________________________________|\n_____________80________________________________________________________________________7\n |
227 -- 233 |
8 -- 14 |
-51.0346 kcal/mol |
16.597 kcal/mol |
21.5113 kcal/mol |
173 234@LB@ | |@LB@5'-GCA...GUCGU GAA UCA GAAAA U A C U UUAUU...GUU-3'@LB@ UUGGCUU GA GAGGAA GA GCG GCAG G UUUU GGGU AGGG GUGCCGCU@LB@ ||||||| || |||:|| || :|| |||| | :||: |||| ||:| ||||||||@LB@ AACCGAA CU CUCUUU CU UGC CGUC C GAAG CCCA UCUC CACGGCGA@LB@3'-CGC...AGUGC AUCAAUAAG CAA GAGAG U C A U UU AUUU GGCAAAG-5'@LB@ | |@LB@ 80 7@LB@@LB@@LB@Energy -12.93 kcal/mol@LB@Hybridization Energy -51.0346 kcal/mol@LB@Unfolding Energy - mRNA 16.597 kcal/mol@LB@Unfolding Energy - sRNA 21.5113 kcal/mol@LB@@LB@Position - mRNA 174 -- 233@LB@Position - sRNA 8 -- 79@LB@Position Seed - mRNA 227 -- 233@LB@Position Seed - sRNA 8 -- 14@LB@ |
