| 1 |
0 |
0 |
b3961 |
oxyR |
-149.65 |
0.000000 |
1 -- 105 |
1 -- 105 |
oxidative and nitrosative stress transcriptional regulator |
|
______________1________________________________________________________________________________________________________106\n______________|________________________________________________________________________________________________________|\n___________5'-_________________________________________________________________________________________________________UGUGA...GCG-3'\n______________AUCCUGGAGAUCCGCAAAAGUUCACGUUGGCUUUAGUUAUUCGAGUUGAGAAACUCUCGAAACGGGCAGUGACUUCAAGGGUUAAAAGAGGUGCCGCUCCGUUUC\n______________|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||\n______________UAGGACCUCUAGGCGUUUUCAAGUGCAACCGAAAUCAAUAAGCUCAACUCUUUGAGAGCUUUGCCCGUCACUGAAGUUCCCAAUUUUCUCCACGGCGAGGCAAAG\n_______3'-CGCC_________________________________________________________________________________________________________-5'\n_____________|________________________________________________________________________________________________________|\n_____________106______________________________________________________________________________________________________1\n |
99 -- 105 |
1 -- 7 |
-211.4 kcal/mol |
28.7244 kcal/mol |
33.0219 kcal/mol |
1 106@LB@ | |@LB@ 5'- UGUGA...GCG-3'@LB@ AUCCUGGAGAUCCGCAAAAGUUCACGUUGGCUUUAGUUAUUCGAGUUGAGAAACUCUCGAAACGGGCAGUGACUUCAAGGGUUAAAAGAGGUGCCGCUCCGUUUC@LB@ |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||@LB@ UAGGACCUCUAGGCGUUUUCAAGUGCAACCGAAAUCAAUAAGCUCAACUCUUUGAGAGCUUUGCCCGUCACUGAAGUUCCCAAUUUUCUCCACGGCGAGGCAAAG@LB@ 3'-CGCC -5'@LB@ | |@LB@ 106 1@LB@@LB@@LB@Energy -149.65 kcal/mol@LB@Hybridization Energy -211.4 kcal/mol@LB@Unfolding Energy - mRNA 28.7244 kcal/mol@LB@Unfolding Energy - sRNA 33.0219 kcal/mol@LB@@LB@Position - mRNA 1 -- 105@LB@Position - sRNA 1 -- 105@LB@Position Seed - mRNA 99 -- 105@LB@Position Seed - sRNA 1 -- 7@LB@ |
| 64 |
0.01278 |
0.5385 |
b1718 |
infC |
-10.82 |
0.076139 |
1 -- 9 |
71 -- 79 |
translation initiation factor IF-3 |
|
______________1________10\n______________|________|\n___________5'-_________AAAUC...AGC-3'\n______________UUGGCUUUA\n______________|||||||||\n______________AACCGAAAU\n3'-CGC...AGUGC_________CAAUA...AAG-5'\n_____________|_________|\n_____________80________70\n |
3 -- 9 |
71 -- 77 |
-11.2516 kcal/mol |
0.206511 kcal/mol |
0.222833 kcal/mol |
1 10@LB@ | |@LB@ 5'- AAAUC...AGC-3'@LB@ UUGGCUUUA@LB@ |||||||||@LB@ AACCGAAAU@LB@3'-CGC...AGUGC CAAUA...AAG-5'@LB@ | |@LB@ 80 70@LB@@LB@@LB@Energy -10.82 kcal/mol@LB@Hybridization Energy -11.2516 kcal/mol@LB@Unfolding Energy - mRNA 0.206511 kcal/mol@LB@Unfolding Energy - sRNA 0.222833 kcal/mol@LB@@LB@Position - mRNA 1 -- 9@LB@Position - sRNA 71 -- 79@LB@Position Seed - mRNA 3 -- 9@LB@Position Seed - sRNA 71 -- 77@LB@ |
| 8 |
0.001355 |
0.5385 |
b3915 |
fieF |
-13.87 |
0.021962 |
2 -- 39 |
50 -- 90 |
ferrous iron and zinc transporter |
|
_____________1_____________________________________________40\n_____________|_____________________________________________|\n__________5'-A_________U_____AA___A_____________A_U__C_____ACGUU...AUA-3'\n______________AAAAGUUCA_CGUUG__GCU________UUGAGU_G_AG_AACUC\n______________|||||||||_|||||__|||________|:||||_|_||_|||||\n______________UUUUCAAGU_GCAAC__CGA________AGCUCA_C_UC_UUGAG\n3'-CGC...AGGCG____________________AAUCAAUA______A____U_____AGCUU...AAG-5'\n_____________|_____________________________________________|\n_____________91____________________________________________49\n |
4 -- 10 |
82 -- 88 |
-26.5193 kcal/mol |
8.24047 kcal/mol |
4.40801 kcal/mol |
1 40@LB@ | |@LB@ 5'-A U AA A A U C ACGUU...AUA-3'@LB@ AAAAGUUCA CGUUG GCU UUGAGU G AG AACUC@LB@ ||||||||| ||||| ||| |:|||| | || |||||@LB@ UUUUCAAGU GCAAC CGA AGCUCA C UC UUGAG@LB@3'-CGC...AGGCG AAUCAAUA A U AGCUU...AAG-5'@LB@ | |@LB@ 91 49@LB@@LB@@LB@Energy -13.87 kcal/mol@LB@Hybridization Energy -26.5193 kcal/mol@LB@Unfolding Energy - mRNA 8.24047 kcal/mol@LB@Unfolding Energy - sRNA 4.40801 kcal/mol@LB@@LB@Position - mRNA 2 -- 39@LB@Position - sRNA 50 -- 90@LB@Position Seed - mRNA 4 -- 10@LB@Position Seed - sRNA 82 -- 88@LB@ |
| 21 |
0.003546 |
0.5385 |
b0820 |
ybiT |
-11.98 |
0.047670 |
3 -- 23 |
55 -- 78 |
ABC-F family putative regulatory ATPase |
|
_____________2________________________24\n_____________|________________________|\n_________5'-CC_________GCCA___________AUAUU...UUG-3'\n______________UGGC___AG____UUGGGUUGAGA\n______________||||___||____|:|:|||||||\n______________ACCG___UC____AGCUCAACUCU\n3'-CGC...GUGCA____AAA__AAUA___________UUGAG...AAG-5'\n_____________|________________________|\n_____________79_______________________54\n |
17 -- 23 |
55 -- 61 |
-19.5112 kcal/mol |
4.68968 kcal/mol |
2.84302 kcal/mol |
2 24@LB@ | |@LB@ 5'-CC GCCA AUAUU...UUG-3'@LB@ UGGC AG UUGGGUUGAGA@LB@ |||| || |:|:|||||||@LB@ ACCG UC AGCUCAACUCU@LB@3'-CGC...GUGCA AAA AAUA UUGAG...AAG-5'@LB@ | |@LB@ 79 54@LB@@LB@@LB@Energy -11.98 kcal/mol@LB@Hybridization Energy -19.5112 kcal/mol@LB@Unfolding Energy - mRNA 4.68968 kcal/mol@LB@Unfolding Energy - sRNA 2.84302 kcal/mol@LB@@LB@Position - mRNA 3 -- 23@LB@Position - sRNA 55 -- 78@LB@Position Seed - mRNA 17 -- 23@LB@Position Seed - sRNA 55 -- 61@LB@ |
| 105 |
0.01788 |
0.5385 |
b0619 |
citA |
-6.78 |
0.351941 |
4 -- 24 |
64 -- 89 |
sensory histidine kinase in two-component regulatory system with CitB |
|
_____________3__________________________25\n_____________|__________________________|\n________5'-CAU______AG__________________AUUUA...UCA-3'\n______________AGAGUU_____UGGUUUU__UUAUUU\n______________|:||||_____|||:|||__|||||:\n______________UUUCAA_____ACCGAAA__AAUAAG\n3'-CGC...GGCGU______GUGCA_______UC______CUCAA...AAG-5'\n_____________|__________________________|\n_____________90_________________________63\n |
12 -- 18 |
72 -- 78 |
-10.9037 kcal/mol |
3.54899 kcal/mol |
0.576654 kcal/mol |
3 25@LB@ | |@LB@ 5'-CAU AG AUUUA...UCA-3'@LB@ AGAGUU UGGUUUU UUAUUU@LB@ |:|||| |||:||| |||||:@LB@ UUUCAA ACCGAAA AAUAAG@LB@3'-CGC...GGCGU GUGCA UC CUCAA...AAG-5'@LB@ | |@LB@ 90 63@LB@@LB@@LB@Energy -6.78 kcal/mol@LB@Hybridization Energy -10.9037 kcal/mol@LB@Unfolding Energy - mRNA 3.54899 kcal/mol@LB@Unfolding Energy - sRNA 0.576654 kcal/mol@LB@@LB@Position - mRNA 4 -- 24@LB@Position - sRNA 64 -- 89@LB@Position Seed - mRNA 12 -- 18@LB@Position Seed - sRNA 72 -- 78@LB@ |
| 135 |
0.02294 |
0.5385 |
b4254 |
argI |
-11.70 |
0.053356 |
4 -- 33 |
59 -- 85 |
ornithine carbamoyltransferase 1 |
b0273 |
_____________3______________________________34\n_____________|______________________________|\n________5'-UUC______C__UU___CC________C_____UGCCA...AUA-3'\n______________UUCACG_UG__CUU__AGUUGUUC_GGGUU\n______________||||||_||__|||__||||:|||_|:|||\n______________AAGUGC_AC__GAA__UCAAUAAG_CUCAA\n3'-CGC...UUUUC______A__C____A_______________CUCUU...AAG-5'\n_____________|______________________________|\n_____________86_____________________________58\n |
21 -- 27 |
64 -- 70 |
-19.7051 kcal/mol |
6.29613 kcal/mol |
1.70749 kcal/mol |
3 34@LB@ | |@LB@ 5'-UUC C UU CC C UGCCA...AUA-3'@LB@ UUCACG UG CUU AGUUGUUC GGGUU@LB@ |||||| || ||| ||||:||| |:|||@LB@ AAGUGC AC GAA UCAAUAAG CUCAA@LB@3'-CGC...UUUUC A C A CUCUU...AAG-5'@LB@ | |@LB@ 86 58@LB@@LB@@LB@Energy -11.70 kcal/mol@LB@Hybridization Energy -19.7051 kcal/mol@LB@Unfolding Energy - mRNA 6.29613 kcal/mol@LB@Unfolding Energy - sRNA 1.70749 kcal/mol@LB@@LB@Position - mRNA 4 -- 33@LB@Position - sRNA 59 -- 85@LB@Position Seed - mRNA 21 -- 27@LB@Position Seed - sRNA 64 -- 70@LB@ |
| 174 |
0.03067 |
0.5559 |
b4005 |
purD |
-11.17 |
0.066076 |
4 -- 22 |
73 -- 90 |
phosphoribosylglycinamide synthetase phosphoribosylamine-glycine ligase |
|
_____________3___________________23\n_____________|___________________|\n________5'-GUG________CU__A______CUGAC...GUA-3'\n______________AAAGGUUC__CG_UGGCUU\n______________|||:||||__||_||||||\n______________UUUUCAAG__GC_ACCGAA\n3'-CGC...AGGCG________U___A______AUCAA...AAG-5'\n_____________|___________________|\n_____________91__________________72\n |
5 -- 11 |
83 -- 89 |
-16.9563 kcal/mol |
5.26463 kcal/mol |
0.517799 kcal/mol |
3 23@LB@ | |@LB@ 5'-GUG CU A CUGAC...GUA-3'@LB@ AAAGGUUC CG UGGCUU@LB@ |||:|||| || ||||||@LB@ UUUUCAAG GC ACCGAA@LB@3'-CGC...AGGCG U A AUCAA...AAG-5'@LB@ | |@LB@ 91 72@LB@@LB@@LB@Energy -11.17 kcal/mol@LB@Hybridization Energy -16.9563 kcal/mol@LB@Unfolding Energy - mRNA 5.26463 kcal/mol@LB@Unfolding Energy - sRNA 0.517799 kcal/mol@LB@@LB@Position - mRNA 4 -- 22@LB@Position - sRNA 73 -- 90@LB@Position Seed - mRNA 5 -- 11@LB@Position Seed - sRNA 83 -- 89@LB@ |
| 145 |
0.02443 |
0.5467 |
b2569 |
lepA |
-12.53 |
0.038132 |
5 -- 17 |
71 -- 85 |
back-translocating elongation factor EF4 GTPase |
|
_____________4_______________18\n_____________|_______________|\n_______5'-UGAU_______________UUGCA...ACC-3'\n______________UUCAC__UGGCUUUG\n______________|||||__|||||||:\n______________AAGUG__ACCGAAAU\n3'-CGC...UUUUC_____CA________CAAUA...AAG-5'\n_____________|_______________|\n_____________86______________70\n |
11 -- 17 |
71 -- 77 |
-14.3569 kcal/mol |
1.27074 kcal/mol |
0.560731 kcal/mol |
4 18@LB@ | |@LB@ 5'-UGAU UUGCA...ACC-3'@LB@ UUCAC UGGCUUUG@LB@ ||||| |||||||:@LB@ AAGUG ACCGAAAU@LB@3'-CGC...UUUUC CA CAAUA...AAG-5'@LB@ | |@LB@ 86 70@LB@@LB@@LB@Energy -12.53 kcal/mol@LB@Hybridization Energy -14.3569 kcal/mol@LB@Unfolding Energy - mRNA 1.27074 kcal/mol@LB@Unfolding Energy - sRNA 0.560731 kcal/mol@LB@@LB@Position - mRNA 5 -- 17@LB@Position - sRNA 71 -- 85@LB@Position Seed - mRNA 11 -- 17@LB@Position Seed - sRNA 71 -- 77@LB@ |
| 3 |
0.0006202 |
0.5173 |
b3310 |
rplN |
-11.54 |
0.056896 |
6 -- 16 |
77 -- 87 |
50S ribosomal subunit protein L14 |
|
_____________5___________17\n_____________|___________|\n______5'-ACGCU___________UAGAG...CAG-3'\n______________GGUUCGCGUUG\n______________:||||:|||||\n______________UCAAGUGCAAC\n3'-CGC...CGUUU___________CGAAA...AAG-5'\n_____________|___________|\n_____________88__________76\n |
10 -- 16 |
77 -- 83 |
-15.9171 kcal/mol |
3.86869 kcal/mol |
0.505155 kcal/mol |
5 17@LB@ | |@LB@ 5'-ACGCU UAGAG...CAG-3'@LB@ GGUUCGCGUUG@LB@ :||||:|||||@LB@ UCAAGUGCAAC@LB@3'-CGC...CGUUU CGAAA...AAG-5'@LB@ | |@LB@ 88 76@LB@@LB@@LB@Energy -11.54 kcal/mol@LB@Hybridization Energy -15.9171 kcal/mol@LB@Unfolding Energy - mRNA 3.86869 kcal/mol@LB@Unfolding Energy - sRNA 0.505155 kcal/mol@LB@@LB@Position - mRNA 6 -- 16@LB@Position - sRNA 77 -- 87@LB@Position Seed - mRNA 10 -- 16@LB@Position Seed - sRNA 77 -- 83@LB@ |
| 154 |
0.02609 |
0.5541 |
b4195 |
ulaC |
-15.85 |
0.009707 |
6 -- 31 |
56 -- 80 |
L-ascorbate-specific enzyme IIA component of PTS |
|
_____________5__________________________32\n_____________|__________________________|\n______5'-GCGCG______GAGUACAAAAG_________UGGCG...UGG-3'\n______________GUUGGC___________CGAGUUGAG\n______________||||||___________|||||||||\n______________CAACCG___________GCUCAACUC\n3'-CGC...AAGUG______AAAUCAAUAA__________UUUGA...AAG-5'\n_____________|__________________________|\n_____________81_________________________55\n |
25 -- 31 |
56 -- 62 |
-23.4839 kcal/mol |
5.91355 kcal/mol |
1.71557 kcal/mol |
5 32@LB@ | |@LB@ 5'-GCGCG GAGUACAAAAG UGGCG...UGG-3'@LB@ GUUGGC CGAGUUGAG@LB@ |||||| |||||||||@LB@ CAACCG GCUCAACUC@LB@3'-CGC...AAGUG AAAUCAAUAA UUUGA...AAG-5'@LB@ | |@LB@ 81 55@LB@@LB@@LB@Energy -15.85 kcal/mol@LB@Hybridization Energy -23.4839 kcal/mol@LB@Unfolding Energy - mRNA 5.91355 kcal/mol@LB@Unfolding Energy - sRNA 1.71557 kcal/mol@LB@@LB@Position - mRNA 6 -- 31@LB@Position - sRNA 56 -- 80@LB@Position Seed - mRNA 25 -- 31@LB@Position Seed - sRNA 56 -- 62@LB@ |
