| 1 |
0 |
0 |
b3961 |
oxyR |
-149.65 |
0.000000 |
1 -- 105 |
1 -- 105 |
oxidative and nitrosative stress transcriptional regulator |
|
______________1________________________________________________________________________________________________________106\n______________|________________________________________________________________________________________________________|\n___________5'-_________________________________________________________________________________________________________UGUGA...GCG-3'\n______________AUCCUGGAGAUCCGCAAAAGUUCACGUUGGCUUUAGUUAUUCGAGUUGAGAAACUCUCGAAACGGGCAGUGACUUCAAGGGUUAAAAGAGGUGCCGCUCCGUUUC\n______________|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||\n______________UAGGACCUCUAGGCGUUUUCAAGUGCAACCGAAAUCAAUAAGCUCAACUCUUUGAGAGCUUUGCCCGUCACUGAAGUUCCCAAUUUUCUCCACGGCGAGGCAAAG\n_______3'-CGCC_________________________________________________________________________________________________________-5'\n_____________|________________________________________________________________________________________________________|\n_____________106______________________________________________________________________________________________________1\n |
99 -- 105 |
1 -- 7 |
-211.4 kcal/mol |
28.7244 kcal/mol |
33.0219 kcal/mol |
1 106@LB@ | |@LB@ 5'- UGUGA...GCG-3'@LB@ AUCCUGGAGAUCCGCAAAAGUUCACGUUGGCUUUAGUUAUUCGAGUUGAGAAACUCUCGAAACGGGCAGUGACUUCAAGGGUUAAAAGAGGUGCCGCUCCGUUUC@LB@ |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||@LB@ UAGGACCUCUAGGCGUUUUCAAGUGCAACCGAAAUCAAUAAGCUCAACUCUUUGAGAGCUUUGCCCGUCACUGAAGUUCCCAAUUUUCUCCACGGCGAGGCAAAG@LB@ 3'-CGCC -5'@LB@ | |@LB@ 106 1@LB@@LB@@LB@Energy -149.65 kcal/mol@LB@Hybridization Energy -211.4 kcal/mol@LB@Unfolding Energy - mRNA 28.7244 kcal/mol@LB@Unfolding Energy - sRNA 33.0219 kcal/mol@LB@@LB@Position - mRNA 1 -- 105@LB@Position - sRNA 1 -- 105@LB@Position Seed - mRNA 99 -- 105@LB@Position Seed - sRNA 1 -- 7@LB@ |
| 150 |
0.02548 |
0.5485 |
b0180 |
fabZ |
-10.02 |
0.104939 |
240 -- 263 |
1 -- 24 |
(3R)-hydroxymyristol acyl carrier protein dehydratase |
|
_____________239______________________264\n_____________|________________________|\n5'-AAA...AGAUU______CUUC______A_______CCGUU...AAG-3'\n______________UUAGAA____UGCCGC_CCGUUUC\n______________|||:||____||||||_|||||||\n______________AAUUUU____ACGGCG_GGCAAAG\n3'-CGC...UUCCC______CUCC______A_______-5'\n_____________|_______________________|\n_____________25______________________1\n |
257 -- 263 |
1 -- 7 |
-23.7452 kcal/mol |
3.39044 kcal/mol |
10.3355 kcal/mol |
239 264@LB@ | |@LB@5'-AAA...AGAUU CUUC A CCGUU...AAG-3'@LB@ UUAGAA UGCCGC CCGUUUC@LB@ |||:|| |||||| |||||||@LB@ AAUUUU ACGGCG GGCAAAG@LB@3'-CGC...UUCCC CUCC A -5'@LB@ | |@LB@ 25 1@LB@@LB@@LB@Energy -10.02 kcal/mol@LB@Hybridization Energy -23.7452 kcal/mol@LB@Unfolding Energy - mRNA 3.39044 kcal/mol@LB@Unfolding Energy - sRNA 10.3355 kcal/mol@LB@@LB@Position - mRNA 240 -- 263@LB@Position - sRNA 1 -- 24@LB@Position Seed - mRNA 257 -- 263@LB@Position Seed - sRNA 1 -- 7@LB@ |
| 10 |
0.001846 |
0.5385 |
b2099 |
yegU |
-13.29 |
0.027829 |
185 -- 270 |
5 -- 83 |
ADP-ribosylglycohydrolase family protein |
|
_____________184_________________________________________________________________________________________271\n_____________|___________________________________________________________________________________________|\n5'-GUG...GUUGA___AAG__GA_______AA___AAAC____CGU________U__UCUUUAU__________G_______A__C__U____A__________AGCUU...CAC-3'\n______________CAC___GG____AGUUA__UGA____AGAA___AUUCUCGG_GC_______GGGCAG__GC_UUAGGGG_UG_GA_GGGG_UGCC_CUCCG\n______________|||___||____|||||__:||____||||___|:|||||:_:|_______||||||__:|_|:|:|||_|:_:|_|:||_||||_|||||\n______________GUG___CC____UCAAU__GCU____UCUU___UGAGAGCU_UG_______CCCGUC__UG_AGUUCCC_AU_UU_CUCC_ACGG_GAGGC\n3'-CGC...UUCAA___CAA__GAAA_____AA___CAAC_______________U_______________AC__A_______A__U____________C_____AAAG-5'\n_____________|___________________________________________________________________________________________|\n_____________84__________________________________________________________________________________________4\n |
243 -- 249 |
25 -- 31 |
-60.0716 kcal/mol |
25.1194 kcal/mol |
21.6578 kcal/mol |
184 271@LB@ | |@LB@5'-GUG...GUUGA AAG GA AA AAAC CGU U UCUUUAU G A C U A AGCUU...CAC-3'@LB@ CAC GG AGUUA UGA AGAA AUUCUCGG GC GGGCAG GC UUAGGGG UG GA GGGG UGCC CUCCG@LB@ ||| || ||||| :|| |||| |:|||||: :| |||||| :| |:|:||| |: :| |:|| |||| |||||@LB@ GUG CC UCAAU GCU UCUU UGAGAGCU UG CCCGUC UG AGUUCCC AU UU CUCC ACGG GAGGC@LB@3'-CGC...UUCAA CAA GAAA AA CAAC U AC A A U C AAAG-5'@LB@ | |@LB@ 84 4@LB@@LB@@LB@Energy -13.29 kcal/mol@LB@Hybridization Energy -60.0716 kcal/mol@LB@Unfolding Energy - mRNA 25.1194 kcal/mol@LB@Unfolding Energy - sRNA 21.6578 kcal/mol@LB@@LB@Position - mRNA 185 -- 270@LB@Position - sRNA 5 -- 83@LB@Position Seed - mRNA 243 -- 249@LB@Position Seed - sRNA 25 -- 31@LB@ |
| 122 |
0.02068 |
0.5385 |
b4529 |
ydbJ |
-12.93 |
0.032363 |
174 -- 233 |
8 -- 79 |
DUF333 family putative lipoprotein |
|
_____________173_______________________________________________________________________234\n_____________|_________________________________________________________________________|\n5'-GCA...GUCGU_______GAA________UCA______GAAAA__U___A____C____________________U________UUAUU...GUU-3'\n______________UUGGCUU_________GA___GAGGAA_____GA_GCG_GCAG_G_UUUU__GGGU____AGGG_GUGCCGCU\n______________|||||||_________||___|||:||_____||_:||_||||_|_:||:__||||____||:|_||||||||\n______________AACCGAA_________CU___CUCUUU_____CU_UGC_CGUC_C_GAAG__CCCA____UCUC_CACGGCGA\n3'-CGC...AGUGC_______AUCAAUAAG__CAA______GAGAG__U___C____A_U____UU____AUUU_____________GGCAAAG-5'\n_____________|_________________________________________________________________________|\n_____________80________________________________________________________________________7\n |
227 -- 233 |
8 -- 14 |
-51.0346 kcal/mol |
16.597 kcal/mol |
21.5113 kcal/mol |
173 234@LB@ | |@LB@5'-GCA...GUCGU GAA UCA GAAAA U A C U UUAUU...GUU-3'@LB@ UUGGCUU GA GAGGAA GA GCG GCAG G UUUU GGGU AGGG GUGCCGCU@LB@ ||||||| || |||:|| || :|| |||| | :||: |||| ||:| ||||||||@LB@ AACCGAA CU CUCUUU CU UGC CGUC C GAAG CCCA UCUC CACGGCGA@LB@3'-CGC...AGUGC AUCAAUAAG CAA GAGAG U C A U UU AUUU GGCAAAG-5'@LB@ | |@LB@ 80 7@LB@@LB@@LB@Energy -12.93 kcal/mol@LB@Hybridization Energy -51.0346 kcal/mol@LB@Unfolding Energy - mRNA 16.597 kcal/mol@LB@Unfolding Energy - sRNA 21.5113 kcal/mol@LB@@LB@Position - mRNA 174 -- 233@LB@Position - sRNA 8 -- 79@LB@Position Seed - mRNA 227 -- 233@LB@Position Seed - sRNA 8 -- 14@LB@ |
| 129 |
0.02219 |
0.5385 |
b4034 |
malE |
-15.67 |
0.010476 |
105 -- 137 |
9 -- 40 |
maltose transporter subunit |
|
_____________104_______________________________138\n_____________|_________________________________|\n5'-AGG...GGGGC____G___AAG____AUG_________U_____AUAAA...UGG-3'\n______________GUAG_GGC___GAGG___GAAAGAGGU_GCCGU\n______________|:||_|:|___:|||___:||||||||_||||:\n______________CGUC_CUG___UUCC___UUUUCUCCA_CGGCG\n3'-CGC...UUGCC____A___AAG____CAA_______________AGGCAAAG-5'\n_____________|_________________________________|\n_____________41________________________________8\n |
125 -- 131 |
14 -- 20 |
-33.6959 kcal/mol |
8.2816 kcal/mol |
9.74463 kcal/mol |
104 138@LB@ | |@LB@5'-AGG...GGGGC G AAG AUG U AUAAA...UGG-3'@LB@ GUAG GGC GAGG GAAAGAGGU GCCGU@LB@ |:|| |:| :||| :|||||||| ||||:@LB@ CGUC CUG UUCC UUUUCUCCA CGGCG@LB@3'-CGC...UUGCC A AAG CAA AGGCAAAG-5'@LB@ | |@LB@ 41 8@LB@@LB@@LB@Energy -15.67 kcal/mol@LB@Hybridization Energy -33.6959 kcal/mol@LB@Unfolding Energy - mRNA 8.2816 kcal/mol@LB@Unfolding Energy - sRNA 9.74463 kcal/mol@LB@@LB@Position - mRNA 105 -- 137@LB@Position - sRNA 9 -- 40@LB@Position Seed - mRNA 125 -- 131@LB@Position Seed - sRNA 14 -- 20@LB@ |
| 52 |
0.01055 |
0.5385 |
b2963 |
mltC |
-16.80 |
0.006570 |
83 -- 101 |
12 -- 32 |
membrane-bound lytic murein transglycosylase C |
|
_____________82____________________102\n_____________|_____________________|\n5'-CAU...UCCUG_____________________AUAUC...AUA-3'\n______________UUCGAGGGU__AAAGAGGUGC\n______________|||:|||||__||||||||||\n______________AAGUUCCCA__UUUCUCCACG\n3'-CGC...CACUG_________AU__________GCGAG...AAG-5'\n_____________|_____________________|\n_____________33____________________11\n |
95 -- 101 |
12 -- 18 |
-28.8763 kcal/mol |
6.26663 kcal/mol |
5.80657 kcal/mol |
82 102@LB@ | |@LB@5'-CAU...UCCUG AUAUC...AUA-3'@LB@ UUCGAGGGU AAAGAGGUGC@LB@ |||:||||| ||||||||||@LB@ AAGUUCCCA UUUCUCCACG@LB@3'-CGC...CACUG AU GCGAG...AAG-5'@LB@ | |@LB@ 33 11@LB@@LB@@LB@Energy -16.80 kcal/mol@LB@Hybridization Energy -28.8763 kcal/mol@LB@Unfolding Energy - mRNA 6.26663 kcal/mol@LB@Unfolding Energy - sRNA 5.80657 kcal/mol@LB@@LB@Position - mRNA 83 -- 101@LB@Position - sRNA 12 -- 32@LB@Position Seed - mRNA 95 -- 101@LB@Position Seed - sRNA 12 -- 18@LB@ |
| 60 |
0.01169 |
0.5385 |
b2441 |
eutB |
-14.17 |
0.019414 |
238 -- 261 |
12 -- 34 |
ethanolamine ammonia-lyase large subunit heavy chain |
|
_____________237______________________262\n_____________|________________________|\n5'-CUG...AUAUC_G_______AUG____________UGGCU...UGG-3'\n______________A_UUUAAGG___UAAAAGAGGUGC\n______________|_||:||||___||||||||||||\n______________U_AAGUUCC___AUUUUCUCCACG\n3'-CGC...GUCAC_G_______CA_____________GCGAG...AAG-5'\n_____________|________________________|\n_____________35_______________________11\n |
255 -- 261 |
12 -- 18 |
-24.3693 kcal/mol |
4.39141 kcal/mol |
5.80707 kcal/mol |
237 262@LB@ | |@LB@5'-CUG...AUAUC G AUG UGGCU...UGG-3'@LB@ A UUUAAGG UAAAAGAGGUGC@LB@ | ||:|||| ||||||||||||@LB@ U AAGUUCC AUUUUCUCCACG@LB@3'-CGC...GUCAC G CA GCGAG...AAG-5'@LB@ | |@LB@ 35 11@LB@@LB@@LB@Energy -14.17 kcal/mol@LB@Hybridization Energy -24.3693 kcal/mol@LB@Unfolding Energy - mRNA 4.39141 kcal/mol@LB@Unfolding Energy - sRNA 5.80707 kcal/mol@LB@@LB@Position - mRNA 238 -- 261@LB@Position - sRNA 12 -- 34@LB@Position Seed - mRNA 255 -- 261@LB@Position Seed - sRNA 12 -- 18@LB@ |
| 106 |
0.01861 |
0.5385 |
b2754 |
ygbF |
-9.88 |
0.110684 |
283 -- 300 |
13 -- 30 |
CRISPR adaptation ssRNA endonuclease |
|
_____________282_______________300\n_____________|_________________|\n5'-UGG...ACGUG_______AUAUGU_____-3'\n______________CAGGGGU______AGGUG\n______________||:||||______|||||\n______________GUUCCCA______UCCAC\n3'-CGC...CUGAA_______AUUUUC_____GGCGA...AAG-5'\n_____________|__________________|\n_____________31_________________12\n |
283 -- 289 |
24 -- 30 |
-16.4011 kcal/mol |
3.18452 kcal/mol |
3.3319 kcal/mol |
282 300@LB@ | |@LB@5'-UGG...ACGUG AUAUGU -3'@LB@ CAGGGGU AGGUG@LB@ ||:|||| |||||@LB@ GUUCCCA UCCAC@LB@3'-CGC...CUGAA AUUUUC GGCGA...AAG-5'@LB@ | |@LB@ 31 12@LB@@LB@@LB@Energy -9.88 kcal/mol@LB@Hybridization Energy -16.4011 kcal/mol@LB@Unfolding Energy - mRNA 3.18452 kcal/mol@LB@Unfolding Energy - sRNA 3.3319 kcal/mol@LB@@LB@Position - mRNA 283 -- 300@LB@Position - sRNA 13 -- 30@LB@Position Seed - mRNA 283 -- 289@LB@Position Seed - sRNA 24 -- 30@LB@ |
| 116 |
0.01945 |
0.5385 |
b1175 |
minD |
-9.10 |
0.150484 |
222 -- 240 |
13 -- 34 |
inhibitor of FtsZ ring polymerization; chromosome-membrane tethering protein; membrane ATPase of the MinCDEE system |
|
_____________221____________________241\n_____________|______________________|\n5'-CUG...UUGUU__________C___________UUGGU...AAA-3'\n______________ACUUC__GGG__AAAGGGGGUG\n______________|||||__|||__|||:|:||||\n______________UGAAG__CCC__UUUUCUCCAC\n3'-CGC...GUCAC_____UU___AA__________GGCGA...AAG-5'\n_____________|______________________|\n_____________35_____________________12\n |
234 -- 240 |
13 -- 19 |
-19.7427 kcal/mol |
7.311 kcal/mol |
3.33198 kcal/mol |
221 241@LB@ | |@LB@5'-CUG...UUGUU C UUGGU...AAA-3'@LB@ ACUUC GGG AAAGGGGGUG@LB@ ||||| ||| |||:|:||||@LB@ UGAAG CCC UUUUCUCCAC@LB@3'-CGC...GUCAC UU AA GGCGA...AAG-5'@LB@ | |@LB@ 35 12@LB@@LB@@LB@Energy -9.10 kcal/mol@LB@Hybridization Energy -19.7427 kcal/mol@LB@Unfolding Energy - mRNA 7.311 kcal/mol@LB@Unfolding Energy - sRNA 3.33198 kcal/mol@LB@@LB@Position - mRNA 222 -- 240@LB@Position - sRNA 13 -- 34@LB@Position Seed - mRNA 234 -- 240@LB@Position Seed - sRNA 13 -- 19@LB@ |
| 12 |
0.002293 |
0.5385 |
b1823 |
cspC |
-13.69 |
0.023618 |
13 -- 32 |
14 -- 35 |
stress protein member of the CspA-family |
|
_____________12_____________________33\n_____________|______________________|\n5'-UAU...UAACA________________C_____ACAGU...UCU-3'\n______________GAUUUC__GGGUUAAA_GAGGU\n______________||:|||__||||||||_|||||\n______________CUGAAG__CCCAAUUU_CUCCA\n3'-CGC...CGUCA______UU________U_____CGGCG...AAG-5'\n_____________|______________________|\n_____________36_____________________13\n |
20 -- 26 |
20 -- 26 |
-23.8593 kcal/mol |
6.83349 kcal/mol |
3.33183 kcal/mol |
12 33@LB@ | |@LB@5'-UAU...UAACA C ACAGU...UCU-3'@LB@ GAUUUC GGGUUAAA GAGGU@LB@ ||:||| |||||||| |||||@LB@ CUGAAG CCCAAUUU CUCCA@LB@3'-CGC...CGUCA UU U CGGCG...AAG-5'@LB@ | |@LB@ 36 13@LB@@LB@@LB@Energy -13.69 kcal/mol@LB@Hybridization Energy -23.8593 kcal/mol@LB@Unfolding Energy - mRNA 6.83349 kcal/mol@LB@Unfolding Energy - sRNA 3.33183 kcal/mol@LB@@LB@Position - mRNA 13 -- 32@LB@Position - sRNA 14 -- 35@LB@Position Seed - mRNA 20 -- 26@LB@Position Seed - sRNA 20 -- 26@LB@ |
