| 181 |
0.03179 |
0.5559 |
b3240 |
aaeB |
-9.50 |
0.128739 |
275 -- 287 |
72 -- 86 |
p-hydroxybenzoic acid efflux system component |
|
_____________274_____________288\n_____________|_______________|\n5'-ACU...GCGCU_______________CACUU...UGG-3'\n______________GUUU__GUUGGCUUU\n______________|||:__|||||||||\n______________CAAG__CAACCGAAA\n3'-CGC...GUUUU____UG_________UCAAU...AAG-5'\n_____________|_______________|\n_____________87______________71\n |
281 -- 287 |
72 -- 78 |
-13.8127 kcal/mol |
3.79774 kcal/mol |
0.514266 kcal/mol |
274 288@LB@ | |@LB@5'-ACU...GCGCU CACUU...UGG-3'@LB@ GUUU GUUGGCUUU@LB@ |||: |||||||||@LB@ CAAG CAACCGAAA@LB@3'-CGC...GUUUU UG UCAAU...AAG-5'@LB@ | |@LB@ 87 71@LB@@LB@@LB@Energy -9.50 kcal/mol@LB@Hybridization Energy -13.8127 kcal/mol@LB@Unfolding Energy - mRNA 3.79774 kcal/mol@LB@Unfolding Energy - sRNA 0.514266 kcal/mol@LB@@LB@Position - mRNA 275 -- 287@LB@Position - sRNA 72 -- 86@LB@Position Seed - mRNA 281 -- 287@LB@Position Seed - sRNA 72 -- 78@LB@ |
| 147 |
0.02477 |
0.5467 |
b3259 |
prmA |
-10.37 |
0.091190 |
111 -- 125 |
72 -- 88 |
methyltransferase for 50S ribosomal subunit protein L11 |
|
_____________110_______________126\n_____________|_________________|\n5'-GCC...CUACU_________________CCUGG...AGG-3'\n______________AAGUUUGC__UGGCUUU\n______________|||||::|__|||||||\n______________UUCAAGUG__ACCGAAA\n3'-CGC...GCGUU________CA_______UCAAU...AAG-5'\n_____________|_________________|\n_____________89________________71\n |
119 -- 125 |
72 -- 78 |
-14.8408 kcal/mol |
3.95141 kcal/mol |
0.517175 kcal/mol |
110 126@LB@ | |@LB@5'-GCC...CUACU CCUGG...AGG-3'@LB@ AAGUUUGC UGGCUUU@LB@ |||||::| |||||||@LB@ UUCAAGUG ACCGAAA@LB@3'-CGC...GCGUU CA UCAAU...AAG-5'@LB@ | |@LB@ 89 71@LB@@LB@@LB@Energy -10.37 kcal/mol@LB@Hybridization Energy -14.8408 kcal/mol@LB@Unfolding Energy - mRNA 3.95141 kcal/mol@LB@Unfolding Energy - sRNA 0.517175 kcal/mol@LB@@LB@Position - mRNA 111 -- 125@LB@Position - sRNA 72 -- 88@LB@Position Seed - mRNA 119 -- 125@LB@Position Seed - sRNA 72 -- 78@LB@ |
| 165 |
0.02909 |
0.5559 |
b3283 |
yrdD |
-9.69 |
0.119373 |
265 -- 285 |
52 -- 72 |
ssDNA-binding protein function unknown |
|
_____________264___________________286\n_____________|_____________________|\n5'-AAC...UGAAC___________UCC_______ACGGU...UUG-3'\n______________UGGUUAUUCGA___GGGAAAC\n______________|:|||||||||___|:|||||\n______________AUCAAUAAGCU___CUCUUUG\n3'-CGC...CCGAA___________CAA_______AGAGC...AAG-5'\n_____________|_____________________|\n_____________73____________________51\n |
279 -- 285 |
52 -- 58 |
-20.8466 kcal/mol |
6.85358 kcal/mol |
4.29991 kcal/mol |
264 286@LB@ | |@LB@5'-AAC...UGAAC UCC ACGGU...UUG-3'@LB@ UGGUUAUUCGA GGGAAAC@LB@ |:||||||||| |:|||||@LB@ AUCAAUAAGCU CUCUUUG@LB@3'-CGC...CCGAA CAA AGAGC...AAG-5'@LB@ | |@LB@ 73 51@LB@@LB@@LB@Energy -9.69 kcal/mol@LB@Hybridization Energy -20.8466 kcal/mol@LB@Unfolding Energy - mRNA 6.85358 kcal/mol@LB@Unfolding Energy - sRNA 4.29991 kcal/mol@LB@@LB@Position - mRNA 265 -- 285@LB@Position - sRNA 52 -- 72@LB@Position Seed - mRNA 279 -- 285@LB@Position Seed - sRNA 52 -- 58@LB@ |
| 81 |
0.01462 |
0.5385 |
b3296 |
rpsD |
-10.19 |
0.098165 |
202 -- 218 |
60 -- 78 |
30S ribosomal subunit protein S4 |
|
_____________201_________________219\n_____________|___________________|\n5'-AAG...GAAAA____A____A_________CCUAA...AAA-3'\n______________UGGC___AG_UAUUUGGGU\n______________||||___||_||||:|:||\n______________ACCG___UC_AUAAGCUCA\n3'-CGC...GUGCA____AAA__A_________ACUCU...AAG-5'\n_____________|___________________|\n_____________79__________________59\n |
212 -- 218 |
60 -- 66 |
-14.6837 kcal/mol |
3.69927 kcal/mol |
0.797083 kcal/mol |
201 219@LB@ | |@LB@5'-AAG...GAAAA A A CCUAA...AAA-3'@LB@ UGGC AG UAUUUGGGU@LB@ |||| || ||||:|:||@LB@ ACCG UC AUAAGCUCA@LB@3'-CGC...GUGCA AAA A ACUCU...AAG-5'@LB@ | |@LB@ 79 59@LB@@LB@@LB@Energy -10.19 kcal/mol@LB@Hybridization Energy -14.6837 kcal/mol@LB@Unfolding Energy - mRNA 3.69927 kcal/mol@LB@Unfolding Energy - sRNA 0.797083 kcal/mol@LB@@LB@Position - mRNA 202 -- 218@LB@Position - sRNA 60 -- 78@LB@Position Seed - mRNA 212 -- 218@LB@Position Seed - sRNA 60 -- 66@LB@ |
| 63 |
0.01271 |
0.5385 |
b3306 |
rpsH |
-10.49 |
0.086924 |
89 -- 100 |
56 -- 67 |
30S ribosomal subunit protein S8 |
|
_____________88___________101\n_____________|____________|\n5'-AGC...CGGAA____________CCGUA...AAG-3'\n______________GUUCGGGUUGAG\n______________:||||:||||||\n______________UAAGCUCAACUC\n3'-CGC...AUCAA____________UUUGA...AAG-5'\n_____________|____________|\n_____________68___________55\n |
94 -- 100 |
56 -- 62 |
-16.8063 kcal/mol |
4.74141 kcal/mol |
1.57281 kcal/mol |
88 101@LB@ | |@LB@5'-AGC...CGGAA CCGUA...AAG-3'@LB@ GUUCGGGUUGAG@LB@ :||||:||||||@LB@ UAAGCUCAACUC@LB@3'-CGC...AUCAA UUUGA...AAG-5'@LB@ | |@LB@ 68 55@LB@@LB@@LB@Energy -10.49 kcal/mol@LB@Hybridization Energy -16.8063 kcal/mol@LB@Unfolding Energy - mRNA 4.74141 kcal/mol@LB@Unfolding Energy - sRNA 1.57281 kcal/mol@LB@@LB@Position - mRNA 89 -- 100@LB@Position - sRNA 56 -- 67@LB@Position Seed - mRNA 94 -- 100@LB@Position Seed - sRNA 56 -- 62@LB@ |
| 28 |
0.005203 |
0.5385 |
b3308 |
rplE |
-12.95 |
0.031988 |
121 -- 134 |
62 -- 77 |
50S ribosomal subunit protein L5 |
|
_____________120______________135\n_____________|________________|\n5'-AAA...GUGUA________________AGACG...AGA-3'\n______________GGCUUUAG__AUUCGA\n______________||||||||__||||||\n______________CCGAAAUC__UAAGCU\n3'-CGC...UGCAA________AA______CAACU...AAG-5'\n_____________|________________|\n_____________78_______________61\n |
122 -- 128 |
70 -- 76 |
-17.2589 kcal/mol |
3.56808 kcal/mol |
0.736118 kcal/mol |
120 135@LB@ | |@LB@5'-AAA...GUGUA AGACG...AGA-3'@LB@ GGCUUUAG AUUCGA@LB@ |||||||| ||||||@LB@ CCGAAAUC UAAGCU@LB@3'-CGC...UGCAA AA CAACU...AAG-5'@LB@ | |@LB@ 78 61@LB@@LB@@LB@Energy -12.95 kcal/mol@LB@Hybridization Energy -17.2589 kcal/mol@LB@Unfolding Energy - mRNA 3.56808 kcal/mol@LB@Unfolding Energy - sRNA 0.736118 kcal/mol@LB@@LB@Position - mRNA 121 -- 134@LB@Position - sRNA 62 -- 77@LB@Position Seed - mRNA 122 -- 128@LB@Position Seed - sRNA 70 -- 76@LB@ |
| 3 |
0.0006202 |
0.5173 |
b3310 |
rplN |
-11.54 |
0.056896 |
6 -- 16 |
77 -- 87 |
50S ribosomal subunit protein L14 |
|
_____________5___________17\n_____________|___________|\n______5'-ACGCU___________UAGAG...CAG-3'\n______________GGUUCGCGUUG\n______________:||||:|||||\n______________UCAAGUGCAAC\n3'-CGC...CGUUU___________CGAAA...AAG-5'\n_____________|___________|\n_____________88__________76\n |
10 -- 16 |
77 -- 83 |
-15.9171 kcal/mol |
3.86869 kcal/mol |
0.505155 kcal/mol |
5 17@LB@ | |@LB@ 5'-ACGCU UAGAG...CAG-3'@LB@ GGUUCGCGUUG@LB@ :||||:|||||@LB@ UCAAGUGCAAC@LB@3'-CGC...CGUUU CGAAA...AAG-5'@LB@ | |@LB@ 88 76@LB@@LB@@LB@Energy -11.54 kcal/mol@LB@Hybridization Energy -15.9171 kcal/mol@LB@Unfolding Energy - mRNA 3.86869 kcal/mol@LB@Unfolding Energy - sRNA 0.505155 kcal/mol@LB@@LB@Position - mRNA 6 -- 16@LB@Position - sRNA 77 -- 87@LB@Position Seed - mRNA 10 -- 16@LB@Position Seed - sRNA 77 -- 83@LB@ |
| 23 |
0.004272 |
0.5385 |
b3315 |
rplV |
-10.64 |
0.081808 |
245 -- 278 |
60 -- 90 |
50S ribosomal subunit protein L22 |
|
_____________244________________________________279\n_____________|__________________________________|\n5'-CGC...GCUCA__________C___UU___GACCUG_____C___AAGAA...UGG-3'\n______________GAAGGUUCGC_UUG__GCU______AUUCG_GGU\n______________:||:||||:|_|||__|||______|||||_:||\n______________UUUUCAAGUG_AAC__CGA______UAAGC_UCA\n3'-CGC...AGGCG__________C________AAUCAA_________ACUCU...AAG-5'\n_____________|__________________________________|\n_____________91_________________________________59\n |
248 -- 254 |
81 -- 87 |
-21.0379 kcal/mol |
8.68511 kcal/mol |
1.70935 kcal/mol |
244 279@LB@ | |@LB@5'-CGC...GCUCA C UU GACCUG C AAGAA...UGG-3'@LB@ GAAGGUUCGC UUG GCU AUUCG GGU@LB@ :||:||||:| ||| ||| ||||| :||@LB@ UUUUCAAGUG AAC CGA UAAGC UCA@LB@3'-CGC...AGGCG C AAUCAA ACUCU...AAG-5'@LB@ | |@LB@ 91 59@LB@@LB@@LB@Energy -10.64 kcal/mol@LB@Hybridization Energy -21.0379 kcal/mol@LB@Unfolding Energy - mRNA 8.68511 kcal/mol@LB@Unfolding Energy - sRNA 1.70935 kcal/mol@LB@@LB@Position - mRNA 245 -- 278@LB@Position - sRNA 60 -- 90@LB@Position Seed - mRNA 248 -- 254@LB@Position Seed - sRNA 81 -- 87@LB@ |
| 49 |
0.01016 |
0.5385 |
b3354 |
yheU |
-13.31 |
0.027656 |
105 -- 118 |
71 -- 84 |
UPF0270 family protein |
|
_____________104____________119\n_____________|______________|\n5'-CUG...GGCGG______________UUGGC...GUA-3'\n______________UCAUGUUGGCUUUA\n______________|||:||||||||||\n______________AGUGCAACCGAAAU\n3'-CGC...UUUCA______________CAAUA...AAG-5'\n_____________|______________|\n_____________85_____________70\n |
112 -- 118 |
71 -- 77 |
-20.4483 kcal/mol |
6.58199 kcal/mol |
0.5567 kcal/mol |
104 119@LB@ | |@LB@5'-CUG...GGCGG UUGGC...GUA-3'@LB@ UCAUGUUGGCUUUA@LB@ |||:||||||||||@LB@ AGUGCAACCGAAAU@LB@3'-CGC...UUUCA CAAUA...AAG-5'@LB@ | |@LB@ 85 70@LB@@LB@@LB@Energy -13.31 kcal/mol@LB@Hybridization Energy -20.4483 kcal/mol@LB@Unfolding Energy - mRNA 6.58199 kcal/mol@LB@Unfolding Energy - sRNA 0.5567 kcal/mol@LB@@LB@Position - mRNA 105 -- 118@LB@Position - sRNA 71 -- 84@LB@Position Seed - mRNA 112 -- 118@LB@Position Seed - sRNA 71 -- 77@LB@ |
| 73 |
0.0135 |
0.5385 |
b3362 |
yhfG |
-12.23 |
0.043008 |
184 -- 212 |
50 -- 86 |
putative antitoxin for Fic |
|
_____________183___________________________________213\n_____________|_____________________________________|\n5'-GAU...GACAC_____G_GA___A__________A___GA________ACCGA...CUU-3'\n______________GUUCA_G__GGC_________UC_AGU__AGAAACUC\n______________|||||_|__|||_________||_|||__||||||||\n______________CAAGU_C__CCG_________AG_UCA__UCUUUGAG\n3'-CGC...GUUUU_____G_AA___AAAUCAAUA__C___AC________AGCUU...AAG-5'\n_____________|_____________________________________|\n_____________87____________________________________49\n |
206 -- 212 |
50 -- 56 |
-25.6976 kcal/mol |
9.05881 kcal/mol |
4.40785 kcal/mol |
183 213@LB@ | |@LB@5'-GAU...GACAC G GA A A GA ACCGA...CUU-3'@LB@ GUUCA G GGC UC AGU AGAAACUC@LB@ ||||| | ||| || ||| ||||||||@LB@ CAAGU C CCG AG UCA UCUUUGAG@LB@3'-CGC...GUUUU G AA AAAUCAAUA C AC AGCUU...AAG-5'@LB@ | |@LB@ 87 49@LB@@LB@@LB@Energy -12.23 kcal/mol@LB@Hybridization Energy -25.6976 kcal/mol@LB@Unfolding Energy - mRNA 9.05881 kcal/mol@LB@Unfolding Energy - sRNA 4.40785 kcal/mol@LB@@LB@Position - mRNA 184 -- 212@LB@Position - sRNA 50 -- 86@LB@Position Seed - mRNA 206 -- 212@LB@Position Seed - sRNA 50 -- 56@LB@ |
