| 96 |
0.0164 |
0.5385 |
b2670 |
alaE |
-9.59 |
0.124335 |
245 -- 257 |
74 -- 86 |
alanine exporter alanine-inducible stress-responsive |
|
_____________244___________258\n_____________|_____________|\n5'-CGG...GAUAC_______A_____GUUUA...UCU-3'\n______________GUUCGCG_UGGUU\n______________||||:||_|||:|\n______________CAAGUGC_ACCGA\n3'-CGC...GUUUU_______A_____AAUCA...AAG-5'\n_____________|_____________|\n_____________87____________73\n |
245 -- 251 |
80 -- 86 |
-15.4589 kcal/mol |
5.35611 kcal/mol |
0.513318 kcal/mol |
244 258@LB@ | |@LB@5'-CGG...GAUAC A GUUUA...UCU-3'@LB@ GUUCGCG UGGUU@LB@ ||||:|| |||:|@LB@ CAAGUGC ACCGA@LB@3'-CGC...GUUUU A AAUCA...AAG-5'@LB@ | |@LB@ 87 73@LB@@LB@@LB@Energy -9.59 kcal/mol@LB@Hybridization Energy -15.4589 kcal/mol@LB@Unfolding Energy - mRNA 5.35611 kcal/mol@LB@Unfolding Energy - sRNA 0.513318 kcal/mol@LB@@LB@Position - mRNA 245 -- 257@LB@Position - sRNA 74 -- 86@LB@Position Seed - mRNA 245 -- 251@LB@Position Seed - sRNA 80 -- 86@LB@ |
| 159 |
0.02757 |
0.5559 |
b2701 |
mltB |
-11.73 |
0.052671 |
73 -- 129 |
32 -- 90 |
membrane-bound lytic murein transglycosylase B |
|
_____________72_________________________________________________________________130\n_____________|__________________________________________________________________|\n5'-AGA...UGAAU_____GAUA___AG__GAA_________________UUAUGU___G_____UAU____________ACCGC...GAA-3'\n______________AAAAG____GCG__GG___________UGAGUUGAG______AAA_UC_CG___CGGGCAGUGACU\n______________|||||____:||__||___________:||||||||______|||_||_||___||||||||||||\n______________UUUUC____UGC__CC___________GCUCAACUC______UUU_AG_GC___GCCCGUCACUGA\n3'-CGC...AGGCG_____AAG____AA__GAAAUCAAUAA__________________G__A__UUU____________AGUUC...AAG-5'\n_____________|__________________________________________________________________|\n_____________91_________________________________________________________________31\n |
94 -- 100 |
56 -- 62 |
-46.1733 kcal/mol |
15.4898 kcal/mol |
18.9502 kcal/mol |
72 130@LB@ | |@LB@5'-AGA...UGAAU GAUA AG GAA UUAUGU G UAU ACCGC...GAA-3'@LB@ AAAAG GCG GG UGAGUUGAG AAA UC CG CGGGCAGUGACU@LB@ ||||| :|| || :|||||||| ||| || || ||||||||||||@LB@ UUUUC UGC CC GCUCAACUC UUU AG GC GCCCGUCACUGA@LB@3'-CGC...AGGCG AAG AA GAAAUCAAUAA G A UUU AGUUC...AAG-5'@LB@ | |@LB@ 91 31@LB@@LB@@LB@Energy -11.73 kcal/mol@LB@Hybridization Energy -46.1733 kcal/mol@LB@Unfolding Energy - mRNA 15.4898 kcal/mol@LB@Unfolding Energy - sRNA 18.9502 kcal/mol@LB@@LB@Position - mRNA 73 -- 129@LB@Position - sRNA 32 -- 90@LB@Position Seed - mRNA 94 -- 100@LB@Position Seed - sRNA 56 -- 62@LB@ |
| 97 |
0.01643 |
0.5385 |
b2704 |
srlB |
-9.20 |
0.144516 |
91 -- 103 |
75 -- 87 |
glucitol/sorbitol-specific enzyme IIA component of PTS |
|
_____________90____________104\n_____________|_____________|\n5'-GGC...GACAC_________C___GUCCC...CUG-3'\n______________GGUUCGCGU_GGU\n______________:||||:|||_||:\n______________UCAAGUGCA_CCG\n3'-CGC...CGUUU_________A___AAAUC...AAG-5'\n_____________|_____________|\n_____________88____________74\n |
93 -- 99 |
79 -- 85 |
-16.5171 kcal/mol |
6.8003 kcal/mol |
0.512669 kcal/mol |
90 104@LB@ | |@LB@5'-GGC...GACAC C GUCCC...CUG-3'@LB@ GGUUCGCGU GGU@LB@ :||||:||| ||:@LB@ UCAAGUGCA CCG@LB@3'-CGC...CGUUU A AAAUC...AAG-5'@LB@ | |@LB@ 88 74@LB@@LB@@LB@Energy -9.20 kcal/mol@LB@Hybridization Energy -16.5171 kcal/mol@LB@Unfolding Energy - mRNA 6.8003 kcal/mol@LB@Unfolding Energy - sRNA 0.512669 kcal/mol@LB@@LB@Position - mRNA 91 -- 103@LB@Position - sRNA 75 -- 87@LB@Position Seed - mRNA 93 -- 99@LB@Position Seed - sRNA 79 -- 85@LB@ |
| 132 |
0.0226 |
0.5385 |
b2721 |
hycE |
-8.05 |
0.224194 |
140 -- 148 |
71 -- 79 |
hydrogenase 3 large subunit |
|
_____________139_______149\n_____________|_________|\n5'-UUC...UGGGU_________CAUUU...UGA-3'\n______________UUGGCUUUG\n______________||||||||:\n______________AACCGAAAU\n3'-CGC...AGUGC_________CAAUA...AAG-5'\n_____________|_________|\n_____________80________70\n |
142 -- 148 |
71 -- 77 |
-10.5671 kcal/mol |
2.29615 kcal/mol |
0.222833 kcal/mol |
139 149@LB@ | |@LB@5'-UUC...UGGGU CAUUU...UGA-3'@LB@ UUGGCUUUG@LB@ ||||||||:@LB@ AACCGAAAU@LB@3'-CGC...AGUGC CAAUA...AAG-5'@LB@ | |@LB@ 80 70@LB@@LB@@LB@Energy -8.05 kcal/mol@LB@Hybridization Energy -10.5671 kcal/mol@LB@Unfolding Energy - mRNA 2.29615 kcal/mol@LB@Unfolding Energy - sRNA 0.222833 kcal/mol@LB@@LB@Position - mRNA 140 -- 148@LB@Position - sRNA 71 -- 79@LB@Position Seed - mRNA 142 -- 148@LB@Position Seed - sRNA 71 -- 77@LB@ |
| 2 |
0.0001834 |
0.3 |
b2729 |
hypD |
-13.53 |
0.025234 |
75 -- 91 |
71 -- 87 |
hydrogenase maturation protein |
|
_____________74________________92\n_____________|_________________|\n5'-CAG...GUACU___A_____________CCAUG...GCC-3'\n______________GGU_CACGUUGGCUUUG\n______________:||_||||||||||||:\n______________UCA_GUGCAACCGAAAU\n3'-CGC...CGUUU___A_____________CAAUA...AAG-5'\n_____________|_________________|\n_____________88________________70\n |
85 -- 91 |
71 -- 77 |
-22.1935 kcal/mol |
8.09841 kcal/mol |
0.562376 kcal/mol |
74 92@LB@ | |@LB@5'-CAG...GUACU A CCAUG...GCC-3'@LB@ GGU CACGUUGGCUUUG@LB@ :|| ||||||||||||:@LB@ UCA GUGCAACCGAAAU@LB@3'-CGC...CGUUU A CAAUA...AAG-5'@LB@ | |@LB@ 88 70@LB@@LB@@LB@Energy -13.53 kcal/mol@LB@Hybridization Energy -22.1935 kcal/mol@LB@Unfolding Energy - mRNA 8.09841 kcal/mol@LB@Unfolding Energy - sRNA 0.562376 kcal/mol@LB@@LB@Position - mRNA 75 -- 91@LB@Position - sRNA 71 -- 87@LB@Position Seed - mRNA 85 -- 91@LB@Position Seed - sRNA 71 -- 77@LB@ |
| 106 |
0.01861 |
0.5385 |
b2754 |
ygbF |
-9.88 |
0.110684 |
283 -- 300 |
13 -- 30 |
CRISPR adaptation ssRNA endonuclease |
|
_____________282_______________300\n_____________|_________________|\n5'-UGG...ACGUG_______AUAUGU_____-3'\n______________CAGGGGU______AGGUG\n______________||:||||______|||||\n______________GUUCCCA______UCCAC\n3'-CGC...CUGAA_______AUUUUC_____GGCGA...AAG-5'\n_____________|__________________|\n_____________31_________________12\n |
283 -- 289 |
24 -- 30 |
-16.4011 kcal/mol |
3.18452 kcal/mol |
3.3319 kcal/mol |
282 300@LB@ | |@LB@5'-UGG...ACGUG AUAUGU -3'@LB@ CAGGGGU AGGUG@LB@ ||:|||| |||||@LB@ GUUCCCA UCCAC@LB@3'-CGC...CUGAA AUUUUC GGCGA...AAG-5'@LB@ | |@LB@ 31 12@LB@@LB@@LB@Energy -9.88 kcal/mol@LB@Hybridization Energy -16.4011 kcal/mol@LB@Unfolding Energy - mRNA 3.18452 kcal/mol@LB@Unfolding Energy - sRNA 3.3319 kcal/mol@LB@@LB@Position - mRNA 283 -- 300@LB@Position - sRNA 13 -- 30@LB@Position Seed - mRNA 283 -- 289@LB@Position Seed - sRNA 24 -- 30@LB@ |
| 153 |
0.02565 |
0.5485 |
b2764 |
cysJ |
-8.62 |
0.180864 |
16 -- 26 |
74 -- 84 |
sulfite reductase alpha subunit flavoprotein |
|
_____________15__________27\n_____________|___________|\n5'-UUC...UUUCA___G_______AAUCU...UUG-3'\n______________UUA_GUUGGUU\n______________|:|_|||||:|\n______________AGU_CAACCGA\n3'-CGC...UUUCA___G_______AAUCA...AAG-5'\n_____________|___________|\n_____________85__________73\n |
20 -- 26 |
74 -- 80 |
-11.948 kcal/mol |
2.81948 kcal/mol |
0.508159 kcal/mol |
15 27@LB@ | |@LB@5'-UUC...UUUCA G AAUCU...UUG-3'@LB@ UUA GUUGGUU@LB@ |:| |||||:|@LB@ AGU CAACCGA@LB@3'-CGC...UUUCA G AAUCA...AAG-5'@LB@ | |@LB@ 85 73@LB@@LB@@LB@Energy -8.62 kcal/mol@LB@Hybridization Energy -11.948 kcal/mol@LB@Unfolding Energy - mRNA 2.81948 kcal/mol@LB@Unfolding Energy - sRNA 0.508159 kcal/mol@LB@@LB@Position - mRNA 16 -- 26@LB@Position - sRNA 74 -- 84@LB@Position Seed - mRNA 20 -- 26@LB@Position Seed - sRNA 74 -- 80@LB@ |
| 15 |
0.002894 |
0.5385 |
b2780 |
pyrG |
-11.46 |
0.058961 |
111 -- 140 |
60 -- 90 |
CTP synthetase |
|
_____________110_______________________________141\n_____________|_________________________________|\n5'-UGU...AUAAU________________ACA___CA_________AUACU...GCC-3'\n______________GAAAGUUUG___UGGC___GGU__UGUUCGGGU\n______________:||||||::___||||___:||__|:||||:||\n______________UUUUCAAGU___ACCG___UCA__AUAAGCUCA\n3'-CGC...AGGCG_________GCA____AAA______________ACUCU...AAG-5'\n_____________|_________________________________|\n_____________91________________________________59\n |
134 -- 140 |
60 -- 66 |
-21.5125 kcal/mol |
8.34782 kcal/mol |
1.70935 kcal/mol |
110 141@LB@ | |@LB@5'-UGU...AUAAU ACA CA AUACU...GCC-3'@LB@ GAAAGUUUG UGGC GGU UGUUCGGGU@LB@ :||||||:: |||| :|| |:||||:||@LB@ UUUUCAAGU ACCG UCA AUAAGCUCA@LB@3'-CGC...AGGCG GCA AAA ACUCU...AAG-5'@LB@ | |@LB@ 91 59@LB@@LB@@LB@Energy -11.46 kcal/mol@LB@Hybridization Energy -21.5125 kcal/mol@LB@Unfolding Energy - mRNA 8.34782 kcal/mol@LB@Unfolding Energy - sRNA 1.70935 kcal/mol@LB@@LB@Position - mRNA 111 -- 140@LB@Position - sRNA 60 -- 90@LB@Position Seed - mRNA 134 -- 140@LB@Position Seed - sRNA 60 -- 66@LB@ |
| 104 |
0.0176 |
0.5385 |
b2788 |
gudX |
-9.05 |
0.153387 |
171 -- 179 |
57 -- 65 |
glucarate dehydratase-related protein substrate unknown |
|
_____________170_______180\n_____________|_________|\n5'-CGG...GCGUA_________AACCU...CAU-3'\n______________UCGAGUUGA\n______________|||||||||\n______________AGCUCAACU\n3'-CGC...CAAUA_________CUUUG...AAG-5'\n_____________|_________|\n_____________66________56\n |
173 -- 179 |
57 -- 63 |
-12.8916 kcal/mol |
2.7095 kcal/mol |
1.13183 kcal/mol |
170 180@LB@ | |@LB@5'-CGG...GCGUA AACCU...CAU-3'@LB@ UCGAGUUGA@LB@ |||||||||@LB@ AGCUCAACU@LB@3'-CGC...CAAUA CUUUG...AAG-5'@LB@ | |@LB@ 66 56@LB@@LB@@LB@Energy -9.05 kcal/mol@LB@Hybridization Energy -12.8916 kcal/mol@LB@Unfolding Energy - mRNA 2.7095 kcal/mol@LB@Unfolding Energy - sRNA 1.13183 kcal/mol@LB@@LB@Position - mRNA 171 -- 179@LB@Position - sRNA 57 -- 65@LB@Position Seed - mRNA 173 -- 179@LB@Position Seed - sRNA 57 -- 63@LB@ |
| 146 |
0.0246 |
0.5467 |
b2813 |
mltA |
-8.67 |
0.177423 |
203 -- 222 |
69 -- 90 |
membrane-bound lytic murein transglycosylase A |
|
_____________202____________________223\n_____________|______________________|\n5'-UGC...ACAAU_____G_________G_AA___ACCUU...AAG-3'\n______________GAAAG___ACGUUGG_U__AGU\n______________:||||___|||||||_|__|||\n______________UUUUC___UGCAACC_A__UCA\n3'-CGC...AGGCG_____AAG_______G_AA___AUAAG...AAG-5'\n_____________|______________________|\n_____________91_____________________68\n |
209 -- 215 |
76 -- 82 |
-14.1188 kcal/mol |
4.87564 kcal/mol |
0.572281 kcal/mol |
202 223@LB@ | |@LB@5'-UGC...ACAAU G G AA ACCUU...AAG-3'@LB@ GAAAG ACGUUGG U AGU@LB@ :|||| ||||||| | |||@LB@ UUUUC UGCAACC A UCA@LB@3'-CGC...AGGCG AAG G AA AUAAG...AAG-5'@LB@ | |@LB@ 91 68@LB@@LB@@LB@Energy -8.67 kcal/mol@LB@Hybridization Energy -14.1188 kcal/mol@LB@Unfolding Energy - mRNA 4.87564 kcal/mol@LB@Unfolding Energy - sRNA 0.572281 kcal/mol@LB@@LB@Position - mRNA 203 -- 222@LB@Position - sRNA 69 -- 90@LB@Position Seed - mRNA 209 -- 215@LB@Position Seed - sRNA 76 -- 82@LB@ |
