| 119 |
0.02023 |
0.5385 |
b3579 |
yiaO |
-11.14 |
0.066893 |
104 -- 124 |
64 -- 84 |
2 3-diketo-L-gulonate-binding periplasmic protein |
|
_____________103_____________________125\n_____________|_______________________|\n5'-ACU...UUCCC______CC_______________AUUAU...AAA-3'\n______________UUACGU__UGGUUUUA__UAUUC\n______________|:||||__|||:||||__|||||\n______________AGUGCA__ACCGAAAU__AUAAG\n3'-CGC...UUUCA________________CA_____CUCAA...AAG-5'\n_____________|_______________________|\n_____________85______________________63\n |
113 -- 119 |
71 -- 77 |
-15.3214 kcal/mol |
3.60448 kcal/mol |
0.573392 kcal/mol |
103 125@LB@ | |@LB@5'-ACU...UUCCC CC AUUAU...AAA-3'@LB@ UUACGU UGGUUUUA UAUUC@LB@ |:|||| |||:|||| |||||@LB@ AGUGCA ACCGAAAU AUAAG@LB@3'-CGC...UUUCA CA CUCAA...AAG-5'@LB@ | |@LB@ 85 63@LB@@LB@@LB@Energy -11.14 kcal/mol@LB@Hybridization Energy -15.3214 kcal/mol@LB@Unfolding Energy - mRNA 3.60448 kcal/mol@LB@Unfolding Energy - sRNA 0.573392 kcal/mol@LB@@LB@Position - mRNA 104 -- 124@LB@Position - sRNA 64 -- 84@LB@Position Seed - mRNA 113 -- 119@LB@Position Seed - sRNA 71 -- 77@LB@ |
| 87 |
0.01529 |
0.5385 |
b3636 |
rpmG |
-10.80 |
0.076825 |
199 -- 224 |
53 -- 84 |
50S ribosomal subunit protein L33 |
|
_____________198______________________________225\n_____________|________________________________|\n5'-CAC...AUAAA___________AA__G________________AUCAA...AAC-3'\n______________UCA___UGGCU__AG_UAUUCG___UGAGAAA\n______________|||___|||||__||_||||||___|||||||\n______________AGU___ACCGA__UC_AUAAGC___ACUCUUU\n3'-CGC...UUUCA___GCA_____AA__A______UCA_______GAGAG...AAG-5'\n_____________|________________________________|\n_____________85_______________________________52\n |
218 -- 224 |
53 -- 59 |
-20.7518 kcal/mol |
5.65772 kcal/mol |
4.29409 kcal/mol |
198 225@LB@ | |@LB@5'-CAC...AUAAA AA G AUCAA...AAC-3'@LB@ UCA UGGCU AG UAUUCG UGAGAAA@LB@ ||| ||||| || |||||| |||||||@LB@ AGU ACCGA UC AUAAGC ACUCUUU@LB@3'-CGC...UUUCA GCA AA A UCA GAGAG...AAG-5'@LB@ | |@LB@ 85 52@LB@@LB@@LB@Energy -10.80 kcal/mol@LB@Hybridization Energy -20.7518 kcal/mol@LB@Unfolding Energy - mRNA 5.65772 kcal/mol@LB@Unfolding Energy - sRNA 4.29409 kcal/mol@LB@@LB@Position - mRNA 199 -- 224@LB@Position - sRNA 53 -- 84@LB@Position Seed - mRNA 218 -- 224@LB@Position Seed - sRNA 53 -- 59@LB@ |
| 193 |
0.03391 |
0.5559 |
b3642 |
pyrE |
-10.20 |
0.097546 |
70 -- 90 |
57 -- 80 |
orotate phosphoribosyltransferase |
|
_____________69_______________________91\n_____________|________________________|\n5'-CGG...AUCUU_______C___CC_______GG__AUCGA...AUU-3'\n______________GUUGGCU_UGG_____CGAG__GA\n______________|||||||_|:|_____||||__||\n______________CAACCGA_AUC_____GCUC__CU\n3'-CGC...AAGUG_______A___AAUAA____AA__CUUUG...AAG-5'\n_____________|________________________|\n_____________81_______________________56\n |
70 -- 76 |
74 -- 80 |
-18.9167 kcal/mol |
7.49492 kcal/mol |
1.21861 kcal/mol |
69 91@LB@ | |@LB@5'-CGG...AUCUU C CC GG AUCGA...AUU-3'@LB@ GUUGGCU UGG CGAG GA@LB@ ||||||| |:| |||| ||@LB@ CAACCGA AUC GCUC CU@LB@3'-CGC...AAGUG A AAUAA AA CUUUG...AAG-5'@LB@ | |@LB@ 81 56@LB@@LB@@LB@Energy -10.20 kcal/mol@LB@Hybridization Energy -18.9167 kcal/mol@LB@Unfolding Energy - mRNA 7.49492 kcal/mol@LB@Unfolding Energy - sRNA 1.21861 kcal/mol@LB@@LB@Position - mRNA 70 -- 90@LB@Position - sRNA 57 -- 80@LB@Position Seed - mRNA 70 -- 76@LB@Position Seed - sRNA 74 -- 80@LB@ |
| 77 |
0.01396 |
0.5385 |
b3644 |
yicC |
-11.79 |
0.051421 |
238 -- 254 |
15 -- 31 |
UPF0701 family protein |
|
_____________237_______________255\n_____________|_________________|\n5'-UCU...UGAAA________GAAU_____AGCGC...AAA-3'\n______________UCAAGGGU____GGGGG\n______________||||||||____:|:||\n______________AGUUCCCA____UCUCC\n3'-CGC...ACUGA________AUUU_____ACGGC...AAG-5'\n_____________|_________________|\n_____________32________________14\n |
239 -- 245 |
24 -- 30 |
-20.4957 kcal/mol |
5.4171 kcal/mol |
3.28624 kcal/mol |
237 255@LB@ | |@LB@5'-UCU...UGAAA GAAU AGCGC...AAA-3'@LB@ UCAAGGGU GGGGG@LB@ |||||||| :|:||@LB@ AGUUCCCA UCUCC@LB@3'-CGC...ACUGA AUUU ACGGC...AAG-5'@LB@ | |@LB@ 32 14@LB@@LB@@LB@Energy -11.79 kcal/mol@LB@Hybridization Energy -20.4957 kcal/mol@LB@Unfolding Energy - mRNA 5.4171 kcal/mol@LB@Unfolding Energy - sRNA 3.28624 kcal/mol@LB@@LB@Position - mRNA 238 -- 254@LB@Position - sRNA 15 -- 31@LB@Position Seed - mRNA 239 -- 245@LB@Position Seed - sRNA 24 -- 30@LB@ |
| 13 |
0.002299 |
0.5385 |
b3663 |
yicN |
-11.49 |
0.058154 |
241 -- 256 |
60 -- 78 |
DUF1198 family protein |
|
_____________240_________________257\n_____________|___________________|\n5'-CUU...GUUUG___________________GCUGA...AUC-3'\n______________UGGU__UGGUU_UUCGGGU\n______________|||:__|:|||_||||:||\n______________ACCG__AUCAA_AAGCUCA\n3'-CGC...GUGCA____AA_____U_______ACUCU...AAG-5'\n_____________|___________________|\n_____________79__________________59\n |
250 -- 256 |
60 -- 66 |
-15.2298 kcal/mol |
2.94333 kcal/mol |
0.797083 kcal/mol |
240 257@LB@ | |@LB@5'-CUU...GUUUG GCUGA...AUC-3'@LB@ UGGU UGGUU UUCGGGU@LB@ |||: |:||| ||||:||@LB@ ACCG AUCAA AAGCUCA@LB@3'-CGC...GUGCA AA U ACUCU...AAG-5'@LB@ | |@LB@ 79 59@LB@@LB@@LB@Energy -11.49 kcal/mol@LB@Hybridization Energy -15.2298 kcal/mol@LB@Unfolding Energy - mRNA 2.94333 kcal/mol@LB@Unfolding Energy - sRNA 0.797083 kcal/mol@LB@@LB@Position - mRNA 241 -- 256@LB@Position - sRNA 60 -- 78@LB@Position Seed - mRNA 250 -- 256@LB@Position Seed - sRNA 60 -- 66@LB@ |
| 37 |
0.006912 |
0.5385 |
b3693 |
dgoK |
-11.15 |
0.066742 |
227 -- 259 |
71 -- 102 |
2-oxo-3-deoxygalactonate kinase |
|
_____________226________________________________260\n_____________|__________________________________|\n5'-CAG...AUUGA_________GAC___UCUG_____CC________UCAGG...CAG-3'\n______________CUGGGGAUC___CAA_____CGCG__UGGCUUUA\n______________||||:||||___|||_____|:||__||||||||\n______________GACCUCUAG___GUU_____GUGC__ACCGAAAU\n____3'-CGCCUAG_________GC____UUCAA____A_________CAAUA...AAG-5'\n_____________|__________________________________|\n_____________103________________________________70\n |
253 -- 259 |
71 -- 77 |
-30.6737 kcal/mol |
7.60256 kcal/mol |
11.9219 kcal/mol |
226 260@LB@ | |@LB@5'-CAG...AUUGA GAC UCUG CC UCAGG...CAG-3'@LB@ CUGGGGAUC CAA CGCG UGGCUUUA@LB@ ||||:|||| ||| |:|| ||||||||@LB@ GACCUCUAG GUU GUGC ACCGAAAU@LB@ 3'-CGCCUAG GC UUCAA A CAAUA...AAG-5'@LB@ | |@LB@ 103 70@LB@@LB@@LB@Energy -11.15 kcal/mol@LB@Hybridization Energy -30.6737 kcal/mol@LB@Unfolding Energy - mRNA 7.60256 kcal/mol@LB@Unfolding Energy - sRNA 11.9219 kcal/mol@LB@@LB@Position - mRNA 227 -- 259@LB@Position - sRNA 71 -- 102@LB@Position Seed - mRNA 253 -- 259@LB@Position Seed - sRNA 71 -- 77@LB@ |
| 134 |
0.0229 |
0.5385 |
b3729 |
glmS |
-8.05 |
0.223933 |
255 -- 266 |
79 -- 90 |
L-glutamine:D-fructose-6-phosphate aminotransferase |
|
_____________254__________267\n_____________|____________|\n5'-CAG...UUCUU____________CGUCU...GUC-3'\n______________GAAGGUUUACGU\n______________:||:|||:||||\n______________UUUUCAAGUGCA\n3'-CGC...AGGCG____________ACCGA...AAG-5'\n_____________|____________|\n_____________91___________78\n |
260 -- 266 |
79 -- 85 |
-12.2414 kcal/mol |
3.68327 kcal/mol |
0.506924 kcal/mol |
254 267@LB@ | |@LB@5'-CAG...UUCUU CGUCU...GUC-3'@LB@ GAAGGUUUACGU@LB@ :||:|||:||||@LB@ UUUUCAAGUGCA@LB@3'-CGC...AGGCG ACCGA...AAG-5'@LB@ | |@LB@ 91 78@LB@@LB@@LB@Energy -8.05 kcal/mol@LB@Hybridization Energy -12.2414 kcal/mol@LB@Unfolding Energy - mRNA 3.68327 kcal/mol@LB@Unfolding Energy - sRNA 0.506924 kcal/mol@LB@@LB@Position - mRNA 255 -- 266@LB@Position - sRNA 79 -- 90@LB@Position Seed - mRNA 260 -- 266@LB@Position Seed - sRNA 79 -- 85@LB@ |
| 38 |
0.006978 |
0.5385 |
b3738 |
atpB |
-10.53 |
0.085759 |
128 -- 143 |
69 -- 84 |
F0 sector of membrane-bound ATP synthase subunit a |
|
_____________127______________144\n_____________|________________|\n5'-CAU...GAUCG______G_________GCUGG...ACC-3'\n______________UUACGU_GGUUUUGGU\n______________|:||||_||:|||:||\n______________AGUGCA_CCGAAAUCA\n3'-CGC...UUUCA______A_________AUAAG...AAG-5'\n_____________|________________|\n_____________85_______________68\n |
137 -- 143 |
69 -- 75 |
-16.8893 kcal/mol |
5.79988 kcal/mol |
0.563592 kcal/mol |
127 144@LB@ | |@LB@5'-CAU...GAUCG G GCUGG...ACC-3'@LB@ UUACGU GGUUUUGGU@LB@ |:|||| ||:|||:||@LB@ AGUGCA CCGAAAUCA@LB@3'-CGC...UUUCA A AUAAG...AAG-5'@LB@ | |@LB@ 85 68@LB@@LB@@LB@Energy -10.53 kcal/mol@LB@Hybridization Energy -16.8893 kcal/mol@LB@Unfolding Energy - mRNA 5.79988 kcal/mol@LB@Unfolding Energy - sRNA 0.563592 kcal/mol@LB@@LB@Position - mRNA 128 -- 143@LB@Position - sRNA 69 -- 84@LB@Position Seed - mRNA 137 -- 143@LB@Position Seed - sRNA 69 -- 75@LB@ |
| 19 |
0.003195 |
0.5385 |
b3739 |
atpI |
-12.12 |
0.045044 |
59 -- 85 |
62 -- 85 |
ATP synthase membrane-bound accessory factor |
|
_____________58___________________________86\n_____________|____________________________|\n5'-GAA...AUUUA_____CUU______AC____________AAUCA...ACC-3'\n______________UUCAC___UUGGCU__UUA_UUGUUUGA\n______________|||||___||||||__|||_||:||:||\n______________AAGUG___AACCGA__AAU_AAUAAGCU\n3'-CGC...UUUUC_____C_____________C________CAACU...AAG-5'\n_____________|____________________________|\n_____________86___________________________61\n |
79 -- 85 |
62 -- 68 |
-17.7596 kcal/mol |
3.93623 kcal/mol |
1.70582 kcal/mol |
58 86@LB@ | |@LB@5'-GAA...AUUUA CUU AC AAUCA...ACC-3'@LB@ UUCAC UUGGCU UUA UUGUUUGA@LB@ ||||| |||||| ||| ||:||:||@LB@ AAGUG AACCGA AAU AAUAAGCU@LB@3'-CGC...UUUUC C C CAACU...AAG-5'@LB@ | |@LB@ 86 61@LB@@LB@@LB@Energy -12.12 kcal/mol@LB@Hybridization Energy -17.7596 kcal/mol@LB@Unfolding Energy - mRNA 3.93623 kcal/mol@LB@Unfolding Energy - sRNA 1.70582 kcal/mol@LB@@LB@Position - mRNA 59 -- 85@LB@Position - sRNA 62 -- 85@LB@Position Seed - mRNA 79 -- 85@LB@Position Seed - sRNA 62 -- 68@LB@ |
| 61 |
0.01179 |
0.5385 |
b3748 |
rbsD |
-10.58 |
0.083988 |
129 -- 141 |
72 -- 84 |
D-ribose pyranase |
|
_____________128___________142\n_____________|_____________|\n5'-GGU...UAACG_____A_______CCCAA...UCC-3'\n______________UCACG_UGGUUUU\n______________|||||_|||:|||\n______________AGUGC_ACCGAAA\n3'-CGC...UUUCA_____A_______UCAAU...AAG-5'\n_____________|_____________|\n_____________85____________71\n |
135 -- 141 |
72 -- 78 |
-14.1499 kcal/mol |
3.06287 kcal/mol |
0.509125 kcal/mol |
128 142@LB@ | |@LB@5'-GGU...UAACG A CCCAA...UCC-3'@LB@ UCACG UGGUUUU@LB@ ||||| |||:|||@LB@ AGUGC ACCGAAA@LB@3'-CGC...UUUCA A UCAAU...AAG-5'@LB@ | |@LB@ 85 71@LB@@LB@@LB@Energy -10.58 kcal/mol@LB@Hybridization Energy -14.1499 kcal/mol@LB@Unfolding Energy - mRNA 3.06287 kcal/mol@LB@Unfolding Energy - sRNA 0.509125 kcal/mol@LB@@LB@Position - mRNA 129 -- 141@LB@Position - sRNA 72 -- 84@LB@Position Seed - mRNA 135 -- 141@LB@Position Seed - sRNA 72 -- 78@LB@ |
