| 167 |
0.02971 |
0.5559 |
b3062 |
ttdB |
-9.65 |
0.121251 |
224 -- 260 |
75 -- 106 |
L-tartrate dehydratase beta subunit |
|
_____________223___________________________________261\n_____________|_____________________________________|\n5'-GGA...ACCCC____AAAG___A____________UA_______C___GAUGU...GCG-3'\n______________GAUC____CUG_AGAUCUGCAAGA__UUCGCGU_GGC\n______________||||____|||_|||||:||||:|__|||:|||_|||\n______________CUAG____GAC_UCUAGGCGUUUU__AAGUGCA_CCG\n________3'-CGC___________C____________C________A___AAAUC...AAG-5'\n_____________|_____________________________________|\n_____________107___________________________________74\n |
250 -- 256 |
79 -- 85 |
-36.8095 kcal/mol |
15.2774 kcal/mol |
11.8787 kcal/mol |
223 261@LB@ | |@LB@5'-GGA...ACCCC AAAG A UA C GAUGU...GCG-3'@LB@ GAUC CUG AGAUCUGCAAGA UUCGCGU GGC@LB@ |||| ||| |||||:||||:| |||:||| |||@LB@ CUAG GAC UCUAGGCGUUUU AAGUGCA CCG@LB@ 3'-CGC C C A AAAUC...AAG-5'@LB@ | |@LB@ 107 74@LB@@LB@@LB@Energy -9.65 kcal/mol@LB@Hybridization Energy -36.8095 kcal/mol@LB@Unfolding Energy - mRNA 15.2774 kcal/mol@LB@Unfolding Energy - sRNA 11.8787 kcal/mol@LB@@LB@Position - mRNA 224 -- 260@LB@Position - sRNA 75 -- 106@LB@Position Seed - mRNA 250 -- 256@LB@Position Seed - sRNA 79 -- 85@LB@ |
| 20 |
0.003438 |
0.5385 |
b3093 |
exuT |
-11.51 |
0.057623 |
213 -- 228 |
75 -- 90 |
hexuronate transporter |
|
_____________212______________229\n_____________|________________|\n5'-GGA...AAAUU_____G__________AUAUG...CGC-3'\n______________AAAGG_UUACGUUGGU\n______________|||:|_|:|||||||:\n______________UUUUC_AGUGCAACCG\n3'-CGC...AGGCG_____A__________AAAUC...AAG-5'\n_____________|________________|\n_____________91_______________74\n |
222 -- 228 |
75 -- 81 |
-17.0017 kcal/mol |
4.97243 kcal/mol |
0.517251 kcal/mol |
212 229@LB@ | |@LB@5'-GGA...AAAUU G AUAUG...CGC-3'@LB@ AAAGG UUACGUUGGU@LB@ |||:| |:|||||||:@LB@ UUUUC AGUGCAACCG@LB@3'-CGC...AGGCG A AAAUC...AAG-5'@LB@ | |@LB@ 91 74@LB@@LB@@LB@Energy -11.51 kcal/mol@LB@Hybridization Energy -17.0017 kcal/mol@LB@Unfolding Energy - mRNA 4.97243 kcal/mol@LB@Unfolding Energy - sRNA 0.517251 kcal/mol@LB@@LB@Position - mRNA 213 -- 228@LB@Position - sRNA 75 -- 90@LB@Position Seed - mRNA 222 -- 228@LB@Position Seed - sRNA 75 -- 81@LB@ |
| 89 |
0.01549 |
0.5385 |
b3147 |
lpoA |
-11.44 |
0.059349 |
235 -- 255 |
64 -- 83 |
OM lipoprotein stimulator of MrcA transpeptidase |
|
_____________234___________________256\n_____________|_____________________|\n5'-UAU...AGCCG_______U__GCCU_______UGGCA...AUC-3'\n______________CGCGUUG_CU____GUUGUUC\n______________|:|||||_||____|||:|||\n______________GUGCAAC_GA____CAAUAAG\n3'-CGC...UUCAA_______C__AAU________CUCAA...AAG-5'\n_____________|_____________________|\n_____________84____________________63\n |
249 -- 255 |
64 -- 70 |
-16.9353 kcal/mol |
4.93537 kcal/mol |
0.560651 kcal/mol |
234 256@LB@ | |@LB@5'-UAU...AGCCG U GCCU UGGCA...AUC-3'@LB@ CGCGUUG CU GUUGUUC@LB@ |:||||| || |||:|||@LB@ GUGCAAC GA CAAUAAG@LB@3'-CGC...UUCAA C AAU CUCAA...AAG-5'@LB@ | |@LB@ 84 63@LB@@LB@@LB@Energy -11.44 kcal/mol@LB@Hybridization Energy -16.9353 kcal/mol@LB@Unfolding Energy - mRNA 4.93537 kcal/mol@LB@Unfolding Energy - sRNA 0.560651 kcal/mol@LB@@LB@Position - mRNA 235 -- 255@LB@Position - sRNA 64 -- 83@LB@Position Seed - mRNA 249 -- 255@LB@Position Seed - sRNA 64 -- 70@LB@ |
| 144 |
0.02429 |
0.5467 |
b3156 |
yhbS |
-10.71 |
0.079718 |
207 -- 222 |
50 -- 67 |
GNAT family putative N-acetyltransferase |
|
_____________206________________223\n_____________|__________________|\n5'-CCG...UGCUA__________________CCAUU...AUC-3'\n______________AUUCGAGU__AGAAAUUC\n______________||||||||__|||||:||\n______________UAAGCUCA__UCUUUGAG\n3'-CGC...AUCAA________AC________AGCUU...AAG-5'\n_____________|__________________|\n_____________68_________________49\n |
216 -- 222 |
50 -- 56 |
-17.6544 kcal/mol |
2.73618 kcal/mol |
4.21029 kcal/mol |
206 223@LB@ | |@LB@5'-CCG...UGCUA CCAUU...AUC-3'@LB@ AUUCGAGU AGAAAUUC@LB@ |||||||| |||||:||@LB@ UAAGCUCA UCUUUGAG@LB@3'-CGC...AUCAA AC AGCUU...AAG-5'@LB@ | |@LB@ 68 49@LB@@LB@@LB@Energy -10.71 kcal/mol@LB@Hybridization Energy -17.6544 kcal/mol@LB@Unfolding Energy - mRNA 2.73618 kcal/mol@LB@Unfolding Energy - sRNA 4.21029 kcal/mol@LB@@LB@Position - mRNA 207 -- 222@LB@Position - sRNA 50 -- 67@LB@Position Seed - mRNA 216 -- 222@LB@Position Seed - sRNA 50 -- 56@LB@ |
| 110 |
0.0189 |
0.5385 |
b3175 |
secG |
-9.72 |
0.118042 |
86 -- 106 |
67 -- 90 |
preprotein translocase membrane subunit |
|
_____________85_______________________107\n_____________|________________________|\n5'-GCG...CUUGC__________UC____________GUAUU...CCU-3'\n______________GAAGG_UCAU____GCUUUGGUUA\n______________:||:|_|||:____|||||:||||\n______________UUUUC_AGUG____CGAAAUCAAU\n3'-CGC...AGGCG_____A____CAAC__________AAGCU...AAG-5'\n_____________|________________________|\n_____________91_______________________66\n |
100 -- 106 |
67 -- 73 |
-15.607 kcal/mol |
5.31183 kcal/mol |
0.573552 kcal/mol |
85 107@LB@ | |@LB@5'-GCG...CUUGC UC GUAUU...CCU-3'@LB@ GAAGG UCAU GCUUUGGUUA@LB@ :||:| |||: |||||:||||@LB@ UUUUC AGUG CGAAAUCAAU@LB@3'-CGC...AGGCG A CAAC AAGCU...AAG-5'@LB@ | |@LB@ 91 66@LB@@LB@@LB@Energy -9.72 kcal/mol@LB@Hybridization Energy -15.607 kcal/mol@LB@Unfolding Energy - mRNA 5.31183 kcal/mol@LB@Unfolding Energy - sRNA 0.573552 kcal/mol@LB@@LB@Position - mRNA 86 -- 106@LB@Position - sRNA 67 -- 90@LB@Position Seed - mRNA 100 -- 106@LB@Position Seed - sRNA 67 -- 73@LB@ |
| 100 |
0.01671 |
0.5385 |
b3211 |
yhcC |
-9.80 |
0.114390 |
283 -- 295 |
70 -- 82 |
putative Fe-S oxidoreductase Radical SAM superfamily protein |
|
_____________282___________296\n_____________|_____________|\n5'-UGC...GCUGC___GC________CUGCC-3'\n______________ACG__GGUUUUAG\n______________|||__||:|||||\n______________UGC__CCGAAAUC\n3'-CGC...UCAAG___AA________AAUAA...AAG-5'\n_____________|_____________|\n_____________83____________69\n |
289 -- 295 |
70 -- 76 |
-11.7424 kcal/mol |
1.55142 kcal/mol |
0.389672 kcal/mol |
282 296@LB@ | |@LB@5'-UGC...GCUGC GC CUGCC-3'@LB@ ACG GGUUUUAG@LB@ ||| ||:|||||@LB@ UGC CCGAAAUC@LB@3'-CGC...UCAAG AA AAUAA...AAG-5'@LB@ | |@LB@ 83 69@LB@@LB@@LB@Energy -9.80 kcal/mol@LB@Hybridization Energy -11.7424 kcal/mol@LB@Unfolding Energy - mRNA 1.55142 kcal/mol@LB@Unfolding Energy - sRNA 0.389672 kcal/mol@LB@@LB@Position - mRNA 283 -- 295@LB@Position - sRNA 70 -- 82@LB@Position Seed - mRNA 289 -- 295@LB@Position Seed - sRNA 70 -- 76@LB@ |
| 157 |
0.02703 |
0.5559 |
b3221 |
yhcH |
-9.14 |
0.148013 |
119 -- 127 |
77 -- 85 |
DUF386 family protein cupin superfamily |
|
_____________118_______128\n_____________|_________|\n5'-AUC...GGCAU_________AUUUA...AAG-3'\n______________UUCAUGUUG\n______________||||:||||\n______________AAGUGCAAC\n3'-CGC...UUUUC_________CGAAA...AAG-5'\n_____________|_________|\n_____________86________76\n |
121 -- 127 |
77 -- 83 |
-10.7393 kcal/mol |
1.16925 kcal/mol |
0.427568 kcal/mol |
118 128@LB@ | |@LB@5'-AUC...GGCAU AUUUA...AAG-3'@LB@ UUCAUGUUG@LB@ ||||:||||@LB@ AAGUGCAAC@LB@3'-CGC...UUUUC CGAAA...AAG-5'@LB@ | |@LB@ 86 76@LB@@LB@@LB@Energy -9.14 kcal/mol@LB@Hybridization Energy -10.7393 kcal/mol@LB@Unfolding Energy - mRNA 1.16925 kcal/mol@LB@Unfolding Energy - sRNA 0.427568 kcal/mol@LB@@LB@Position - mRNA 119 -- 127@LB@Position - sRNA 77 -- 85@LB@Position Seed - mRNA 121 -- 127@LB@Position Seed - sRNA 77 -- 83@LB@ |
| 136 |
0.02309 |
0.5385 |
b3223 |
nanE |
-8.63 |
0.180292 |
34 -- 47 |
74 -- 86 |
putative N-acetylmannosamine-6-P epimerase |
|
_____________33_____________48\n_____________|______________|\n5'-AUC...CUCGC_____G________GCGCC...AAA-3'\n______________GUUCA_CGUUGGUU\n______________|||||_||||||:|\n______________CAAGU_GCAACCGA\n3'-CGC...GUUUU______________AAUCA...AAG-5'\n_____________|______________|\n_____________87_____________73\n |
41 -- 47 |
74 -- 80 |
-15.9355 kcal/mol |
6.79344 kcal/mol |
0.513318 kcal/mol |
33 48@LB@ | |@LB@5'-AUC...CUCGC G GCGCC...AAA-3'@LB@ GUUCA CGUUGGUU@LB@ ||||| ||||||:|@LB@ CAAGU GCAACCGA@LB@3'-CGC...GUUUU AAUCA...AAG-5'@LB@ | |@LB@ 87 73@LB@@LB@@LB@Energy -8.63 kcal/mol@LB@Hybridization Energy -15.9355 kcal/mol@LB@Unfolding Energy - mRNA 6.79344 kcal/mol@LB@Unfolding Energy - sRNA 0.513318 kcal/mol@LB@@LB@Position - mRNA 34 -- 47@LB@Position - sRNA 74 -- 86@LB@Position Seed - mRNA 41 -- 47@LB@Position Seed - sRNA 74 -- 80@LB@ |
| 4 |
0.0006326 |
0.5173 |
b3230 |
rpsI |
-11.95 |
0.048152 |
221 -- 251 |
74 -- 108 |
30S ribosomal subunit protein S9 |
|
_____________220_________________________________252\n_____________|___________________________________|\n5'-GUG...UACUA___CA_____UCG________________CA____CGCGU...GUU-3'\n______________CGG___CUGG____CCGCAAAAGUUC_CG___GCU\n______________|||___||||____||||||||||||_||___|||\n______________GCC___GACC____GGCGUUUUCAAG_GC___CGA\n__________3'-C___UAG____UCUA____________U__AAC___AAUCA...AAG-5'\n_____________|___________________________________|\n_____________109_________________________________73\n |
238 -- 244 |
83 -- 89 |
-33.5849 kcal/mol |
9.75151 kcal/mol |
11.8795 kcal/mol |
220 252@LB@ | |@LB@5'-GUG...UACUA CA UCG CA CGCGU...GUU-3'@LB@ CGG CUGG CCGCAAAAGUUC CG GCU@LB@ ||| |||| |||||||||||| || |||@LB@ GCC GACC GGCGUUUUCAAG GC CGA@LB@ 3'-C UAG UCUA U AAC AAUCA...AAG-5'@LB@ | |@LB@ 109 73@LB@@LB@@LB@Energy -11.95 kcal/mol@LB@Hybridization Energy -33.5849 kcal/mol@LB@Unfolding Energy - mRNA 9.75151 kcal/mol@LB@Unfolding Energy - sRNA 11.8795 kcal/mol@LB@@LB@Position - mRNA 221 -- 251@LB@Position - sRNA 74 -- 108@LB@Position Seed - mRNA 238 -- 244@LB@Position Seed - sRNA 83 -- 89@LB@ |
| 188 |
0.03339 |
0.5559 |
b3232 |
zapE |
-6.91 |
0.336884 |
267 -- 282 |
15 -- 35 |
divisome ATPase |
|
_____________266____________________283\n_____________|______________________|\n5'-AGG...CCGAC___G__________________CCGUC...AAA-3'\n______________GAC_UUCA______AAAAGAGG\n______________|||_||||______||||||||\n______________CUG_AAGU______UUUUCUCC\n3'-CGC...CGUCA________UCCCAA________ACGGC...AAG-5'\n_____________|______________________|\n_____________36_____________________14\n |
276 -- 282 |
15 -- 21 |
-13.3674 kcal/mol |
3.12995 kcal/mol |
3.33058 kcal/mol |
266 283@LB@ | |@LB@5'-AGG...CCGAC G CCGUC...AAA-3'@LB@ GAC UUCA AAAAGAGG@LB@ ||| |||| ||||||||@LB@ CUG AAGU UUUUCUCC@LB@3'-CGC...CGUCA UCCCAA ACGGC...AAG-5'@LB@ | |@LB@ 36 14@LB@@LB@@LB@Energy -6.91 kcal/mol@LB@Hybridization Energy -13.3674 kcal/mol@LB@Unfolding Energy - mRNA 3.12995 kcal/mol@LB@Unfolding Energy - sRNA 3.33058 kcal/mol@LB@@LB@Position - mRNA 267 -- 282@LB@Position - sRNA 15 -- 35@LB@Position Seed - mRNA 276 -- 282@LB@Position Seed - sRNA 15 -- 21@LB@ |
