75 |
0.01364 |
0.5385 |
b0107 |
hofB |
-15.68 |
0.010425 |
272 -- 289 |
69 -- 87 |
T2SE secretion family protein; P-loop ATPase superfamily protein |
|
_____________271_________________290\n_____________|___________________|\n5'-CCA...GAGGU_____________GG____CGAUG...CUU-3'\n______________GGUUCAUGUUG_C__UAGU\n______________:|||||:||||_|__||||\n______________UCAAGUGCAAC_G__AUCA\n3'-CGC...CGUUU___________C_AA____AUAAG...AAG-5'\n_____________|___________________|\n_____________88__________________68\n |
276 -- 282 |
77 -- 83 |
-18.3354 kcal/mol |
2.08484 kcal/mol |
0.569189 kcal/mol |
271 290@LB@ | |@LB@5'-CCA...GAGGU GG CGAUG...CUU-3'@LB@ GGUUCAUGUUG C UAGU@LB@ :|||||:|||| | ||||@LB@ UCAAGUGCAAC G AUCA@LB@3'-CGC...CGUUU C AA AUAAG...AAG-5'@LB@ | |@LB@ 88 68@LB@@LB@@LB@Energy -15.68 kcal/mol@LB@Hybridization Energy -18.3354 kcal/mol@LB@Unfolding Energy - mRNA 2.08484 kcal/mol@LB@Unfolding Energy - sRNA 0.569189 kcal/mol@LB@@LB@Position - mRNA 272 -- 289@LB@Position - sRNA 69 -- 87@LB@Position Seed - mRNA 276 -- 282@LB@Position Seed - sRNA 77 -- 83@LB@ |
98 |
0.0165 |
0.5385 |
b0151 |
fhuC |
-12.15 |
0.044517 |
184 -- 202 |
66 -- 85 |
iron(3+)-hydroxamate import ABC transporter ATPase |
|
_____________183____________________203\n_____________|______________________|\n5'-CUG...CCCAU_____AA_______________GCAGG...CCU-3'\n______________UUCAC__GUUGGCU___GUUAU\n______________|||||__|||||||___|||||\n______________AAGUG__CAACCGA___CAAUA\n3'-CGC...UUUUC______________AAU_____AGCUC...AAG-5'\n_____________|______________________|\n_____________86_____________________65\n |
191 -- 197 |
74 -- 80 |
-16.912 kcal/mol |
4.1925 kcal/mol |
0.573112 kcal/mol |
183 203@LB@ | |@LB@5'-CUG...CCCAU AA GCAGG...CCU-3'@LB@ UUCAC GUUGGCU GUUAU@LB@ ||||| ||||||| |||||@LB@ AAGUG CAACCGA CAAUA@LB@3'-CGC...UUUUC AAU AGCUC...AAG-5'@LB@ | |@LB@ 86 65@LB@@LB@@LB@Energy -12.15 kcal/mol@LB@Hybridization Energy -16.912 kcal/mol@LB@Unfolding Energy - mRNA 4.1925 kcal/mol@LB@Unfolding Energy - sRNA 0.573112 kcal/mol@LB@@LB@Position - mRNA 184 -- 202@LB@Position - sRNA 66 -- 85@LB@Position Seed - mRNA 191 -- 197@LB@Position Seed - sRNA 74 -- 80@LB@ |
31 |
0.005384 |
0.5385 |
b0159 |
mtn |
-14.65 |
0.015942 |
9 -- 52 |
71 -- 108 |
5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase |
|
_____________8____________________________________________53\n_____________|____________________________________________|\n___5'-GAUACGCC__C____G__CUC_A____________UC_______C_______ACGCC...UCU-3'\n______________CG_GAUC_CU___G_AGAUCCGCAGGA__UCAUGUU_GGUUUUA\n______________||_||||_||___|_|||||||||::|__|||:|||_||:||||\n______________GC_CUAG_GA___C_UCUAGGCGUUUU__AGUGCAA_CCGAAAU\n__________3'-C__________C________________CA_______________CAAUA...AAG-5'\n_____________|____________________________________________|\n_____________109__________________________________________70\n |
46 -- 52 |
71 -- 77 |
-39.2779 kcal/mol |
12.7007 kcal/mol |
11.9275 kcal/mol |
8 53@LB@ | |@LB@ 5'-GAUACGCC C G CUC A UC C ACGCC...UCU-3'@LB@ CG GAUC CU G AGAUCCGCAGGA UCAUGUU GGUUUUA@LB@ || |||| || | |||||||||::| |||:||| ||:||||@LB@ GC CUAG GA C UCUAGGCGUUUU AGUGCAA CCGAAAU@LB@ 3'-C C CA CAAUA...AAG-5'@LB@ | |@LB@ 109 70@LB@@LB@@LB@Energy -14.65 kcal/mol@LB@Hybridization Energy -39.2779 kcal/mol@LB@Unfolding Energy - mRNA 12.7007 kcal/mol@LB@Unfolding Energy - sRNA 11.9275 kcal/mol@LB@@LB@Position - mRNA 9 -- 52@LB@Position - sRNA 71 -- 108@LB@Position Seed - mRNA 46 -- 52@LB@Position Seed - sRNA 71 -- 77@LB@ |
168 |
0.0298 |
0.5559 |
b0161 |
degP |
-8.84 |
0.166335 |
239 -- 253 |
75 -- 88 |
serine endoprotease (protease Do) membrane-associated |
|
_____________238_____________254\n_____________|_______________|\n5'-AUU...GCUCU_______G_U_____GUUAU...CGA-3'\n______________GAGUUUA_G_UUGGC\n______________:||||:|_|_|||||\n______________UUCAAGU_C_AACCG\n3'-CGC...GCGUU_______G_______AAAUC...AAG-5'\n_____________|_______________|\n_____________89______________74\n |
239 -- 245 |
82 -- 88 |
-14.9204 kcal/mol |
5.56475 kcal/mol |
0.515884 kcal/mol |
238 254@LB@ | |@LB@5'-AUU...GCUCU G U GUUAU...CGA-3'@LB@ GAGUUUA G UUGGC@LB@ :||||:| | |||||@LB@ UUCAAGU C AACCG@LB@3'-CGC...GCGUU G AAAUC...AAG-5'@LB@ | |@LB@ 89 74@LB@@LB@@LB@Energy -8.84 kcal/mol@LB@Hybridization Energy -14.9204 kcal/mol@LB@Unfolding Energy - mRNA 5.56475 kcal/mol@LB@Unfolding Energy - sRNA 0.515884 kcal/mol@LB@@LB@Position - mRNA 239 -- 253@LB@Position - sRNA 75 -- 88@LB@Position Seed - mRNA 239 -- 245@LB@Position Seed - sRNA 82 -- 88@LB@ |
69 |
0.01301 |
0.5385 |
b0174 |
ispU |
-11.35 |
0.061456 |
97 -- 106 |
71 -- 80 |
undecaprenyl pyrophosphate synthase |
|
_____________96_________107\n_____________|__________|\n5'-CGU...AAGUA__________UAAGG...AAA-3'\n______________GUUGGCUUUA\n______________||||||||||\n______________CAACCGAAAU\n3'-CGC...AAGUG__________CAAUA...AAG-5'\n_____________|__________|\n_____________81_________70\n |
100 -- 106 |
71 -- 77 |
-14.3232 kcal/mol |
2.73321 kcal/mol |
0.236872 kcal/mol |
96 107@LB@ | |@LB@5'-CGU...AAGUA UAAGG...AAA-3'@LB@ GUUGGCUUUA@LB@ ||||||||||@LB@ CAACCGAAAU@LB@3'-CGC...AAGUG CAAUA...AAG-5'@LB@ | |@LB@ 81 70@LB@@LB@@LB@Energy -11.35 kcal/mol@LB@Hybridization Energy -14.3232 kcal/mol@LB@Unfolding Energy - mRNA 2.73321 kcal/mol@LB@Unfolding Energy - sRNA 0.236872 kcal/mol@LB@@LB@Position - mRNA 97 -- 106@LB@Position - sRNA 71 -- 80@LB@Position Seed - mRNA 100 -- 106@LB@Position Seed - sRNA 71 -- 77@LB@ |
133 |
0.02275 |
0.5385 |
b0177 |
bamA |
-6.79 |
0.350358 |
265 -- 271 |
23 -- 29 |
BamABCDE complex OM biogenesis outer membrane pore-forming assembly factor |
|
_____________264_____272\n_____________|_______|\n5'-CUG...UGCUG_______CGUAG...GCC-3'\n______________AAGGGUU\n______________|||||||\n______________UUCCCAA\n3'-CGC...UGAAG_______UUUUC...AAG-5'\n_____________|_______|\n_____________30______22\n |
265 -- 271 |
23 -- 29 |
-7.93739 kcal/mol |
1.09969 kcal/mol |
0.0462613 kcal/mol |
264 272@LB@ | |@LB@5'-CUG...UGCUG CGUAG...GCC-3'@LB@ AAGGGUU@LB@ |||||||@LB@ UUCCCAA@LB@3'-CGC...UGAAG UUUUC...AAG-5'@LB@ | |@LB@ 30 22@LB@@LB@@LB@Energy -6.79 kcal/mol@LB@Hybridization Energy -7.93739 kcal/mol@LB@Unfolding Energy - mRNA 1.09969 kcal/mol@LB@Unfolding Energy - sRNA 0.0462613 kcal/mol@LB@@LB@Position - mRNA 265 -- 271@LB@Position - sRNA 23 -- 29@LB@Position Seed - mRNA 265 -- 271@LB@Position Seed - sRNA 23 -- 29@LB@ |
150 |
0.02548 |
0.5485 |
b0180 |
fabZ |
-10.02 |
0.104939 |
240 -- 263 |
1 -- 24 |
(3R)-hydroxymyristol acyl carrier protein dehydratase |
|
_____________239______________________264\n_____________|________________________|\n5'-AAA...AGAUU______CUUC______A_______CCGUU...AAG-3'\n______________UUAGAA____UGCCGC_CCGUUUC\n______________|||:||____||||||_|||||||\n______________AAUUUU____ACGGCG_GGCAAAG\n3'-CGC...UUCCC______CUCC______A_______-5'\n_____________|_______________________|\n_____________25______________________1\n |
257 -- 263 |
1 -- 7 |
-23.7452 kcal/mol |
3.39044 kcal/mol |
10.3355 kcal/mol |
239 264@LB@ | |@LB@5'-AAA...AGAUU CUUC A CCGUU...AAG-3'@LB@ UUAGAA UGCCGC CCGUUUC@LB@ |||:|| |||||| |||||||@LB@ AAUUUU ACGGCG GGCAAAG@LB@3'-CGC...UUCCC CUCC A -5'@LB@ | |@LB@ 25 1@LB@@LB@@LB@Energy -10.02 kcal/mol@LB@Hybridization Energy -23.7452 kcal/mol@LB@Unfolding Energy - mRNA 3.39044 kcal/mol@LB@Unfolding Energy - sRNA 10.3355 kcal/mol@LB@@LB@Position - mRNA 240 -- 263@LB@Position - sRNA 1 -- 24@LB@Position Seed - mRNA 257 -- 263@LB@Position Seed - sRNA 1 -- 7@LB@ |
124 |
0.02124 |
0.5385 |
b0198 |
metI |
-9.85 |
0.112177 |
270 -- 285 |
71 -- 87 |
DL-methionine transporter subunit |
|
_____________269_______________286\n_____________|_________________|\n5'-UCA...UAUCC_____UU__________UGAUU...CGG-3'\n______________GGUUU___UUGGCUUUG\n______________:|||:___||||||||:\n______________UCAAG___AACCGAAAU\n3'-CGC...CGUUU_____UGC_________CAAUA...AAG-5'\n_____________|_________________|\n_____________88________________70\n |
279 -- 285 |
71 -- 77 |
-13.0228 kcal/mol |
2.60961 kcal/mol |
0.562376 kcal/mol |
269 286@LB@ | |@LB@5'-UCA...UAUCC UU UGAUU...CGG-3'@LB@ GGUUU UUGGCUUUG@LB@ :|||: ||||||||:@LB@ UCAAG AACCGAAAU@LB@3'-CGC...CGUUU UGC CAAUA...AAG-5'@LB@ | |@LB@ 88 70@LB@@LB@@LB@Energy -9.85 kcal/mol@LB@Hybridization Energy -13.0228 kcal/mol@LB@Unfolding Energy - mRNA 2.60961 kcal/mol@LB@Unfolding Energy - sRNA 0.562376 kcal/mol@LB@@LB@Position - mRNA 270 -- 285@LB@Position - sRNA 71 -- 87@LB@Position Seed - mRNA 279 -- 285@LB@Position Seed - sRNA 71 -- 77@LB@ |
182 |
0.03197 |
0.5559 |
b0212 |
gloB |
-7.96 |
0.231442 |
50 -- 71 |
56 -- 75 |
hydroxyacylglutathione hydrolase |
|
_____________49_____________________72\n_____________|______________________|\n5'-UUG...AUACA_______GAACCA_________CUGGC...AGC-3'\n______________UUUUAGU______CGGGUUGAG\n______________:||||||______||:||||||\n______________GAAAUCA______GCUCAACUC\n3'-CGC...CAACC_______AUAA___________UUUGA...AAG-5'\n_____________|______________________|\n_____________76_____________________55\n |
65 -- 71 |
56 -- 62 |
-16.3693 kcal/mol |
6.6953 kcal/mol |
1.71204 kcal/mol |
49 72@LB@ | |@LB@5'-UUG...AUACA GAACCA CUGGC...AGC-3'@LB@ UUUUAGU CGGGUUGAG@LB@ :|||||| ||:||||||@LB@ GAAAUCA GCUCAACUC@LB@3'-CGC...CAACC AUAA UUUGA...AAG-5'@LB@ | |@LB@ 76 55@LB@@LB@@LB@Energy -7.96 kcal/mol@LB@Hybridization Energy -16.3693 kcal/mol@LB@Unfolding Energy - mRNA 6.6953 kcal/mol@LB@Unfolding Energy - sRNA 1.71204 kcal/mol@LB@@LB@Position - mRNA 50 -- 71@LB@Position - sRNA 56 -- 75@LB@Position Seed - mRNA 65 -- 71@LB@Position Seed - sRNA 56 -- 62@LB@ |
199 |
0.03481 |
0.5559 |
b0407 |
yajC |
-8.41 |
0.195839 |
88 -- 104 |
15 -- 30 |
SecYEG protein translocase auxillary subunit |
|
_____________87________________105\n_____________|_________________|\n5'-UCU...UUACG_____CUAUU_______GUAAA...UUU-3'\n______________CAAGG_____GAAGAGG\n______________|||||_____:||||||\n______________GUUCC_____UUUCUCC\n3'-CGC...CUGAA_____CAAU________ACGGC...AAG-5'\n_____________|_________________|\n_____________31________________14\n |
98 -- 104 |
15 -- 21 |
-15.1331 kcal/mol |
3.4367 kcal/mol |
3.28624 kcal/mol |
87 105@LB@ | |@LB@5'-UCU...UUACG CUAUU GUAAA...UUU-3'@LB@ CAAGG GAAGAGG@LB@ ||||| :||||||@LB@ GUUCC UUUCUCC@LB@3'-CGC...CUGAA CAAU ACGGC...AAG-5'@LB@ | |@LB@ 31 14@LB@@LB@@LB@Energy -8.41 kcal/mol@LB@Hybridization Energy -15.1331 kcal/mol@LB@Unfolding Energy - mRNA 3.4367 kcal/mol@LB@Unfolding Energy - sRNA 3.28624 kcal/mol@LB@@LB@Position - mRNA 88 -- 104@LB@Position - sRNA 15 -- 30@LB@Position Seed - mRNA 98 -- 104@LB@Position Seed - sRNA 15 -- 21@LB@ |