| 1 |
0 |
0 |
b3961 |
oxyR |
-149.65 |
0.000000 |
1 -- 105 |
1 -- 105 |
oxidative and nitrosative stress transcriptional regulator |
|
______________1________________________________________________________________________________________________________106\n______________|________________________________________________________________________________________________________|\n___________5'-_________________________________________________________________________________________________________UGUGA...GCG-3'\n______________AUCCUGGAGAUCCGCAAAAGUUCACGUUGGCUUUAGUUAUUCGAGUUGAGAAACUCUCGAAACGGGCAGUGACUUCAAGGGUUAAAAGAGGUGCCGCUCCGUUUC\n______________|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||\n______________UAGGACCUCUAGGCGUUUUCAAGUGCAACCGAAAUCAAUAAGCUCAACUCUUUGAGAGCUUUGCCCGUCACUGAAGUUCCCAAUUUUCUCCACGGCGAGGCAAAG\n_______3'-CGCC_________________________________________________________________________________________________________-5'\n_____________|________________________________________________________________________________________________________|\n_____________106______________________________________________________________________________________________________1\n |
99 -- 105 |
1 -- 7 |
-211.4 kcal/mol |
28.7244 kcal/mol |
33.0219 kcal/mol |
1 106@LB@ | |@LB@ 5'- UGUGA...GCG-3'@LB@ AUCCUGGAGAUCCGCAAAAGUUCACGUUGGCUUUAGUUAUUCGAGUUGAGAAACUCUCGAAACGGGCAGUGACUUCAAGGGUUAAAAGAGGUGCCGCUCCGUUUC@LB@ |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||@LB@ UAGGACCUCUAGGCGUUUUCAAGUGCAACCGAAAUCAAUAAGCUCAACUCUUUGAGAGCUUUGCCCGUCACUGAAGUUCCCAAUUUUCUCCACGGCGAGGCAAAG@LB@ 3'-CGCC -5'@LB@ | |@LB@ 106 1@LB@@LB@@LB@Energy -149.65 kcal/mol@LB@Hybridization Energy -211.4 kcal/mol@LB@Unfolding Energy - mRNA 28.7244 kcal/mol@LB@Unfolding Energy - sRNA 33.0219 kcal/mol@LB@@LB@Position - mRNA 1 -- 105@LB@Position - sRNA 1 -- 105@LB@Position Seed - mRNA 99 -- 105@LB@Position Seed - sRNA 1 -- 7@LB@ |
| 189 |
0.03342 |
0.5559 |
b2172 |
yeiQ |
-17.65 |
0.004645 |
282 -- 298 |
70 -- 86 |
putative NAD-dependent D-mannonate oxidoreductase |
|
_____________281_______________299\n_____________|_________________|\n5'-GAU...GUAUC______U__________AG-3'\n______________GUUCAU_UUGGCUUUGG\n______________|||||:_||||||||:|\n______________CAAGUG_AACCGAAAUC\n3'-CGC...GUUUU______C__________AAUAA...AAG-5'\n_____________|_________________|\n_____________87________________69\n |
292 -- 298 |
70 -- 76 |
-21.6632 kcal/mol |
3.44897 kcal/mol |
0.568254 kcal/mol |
281 299@LB@ | |@LB@5'-GAU...GUAUC U AG-3'@LB@ GUUCAU UUGGCUUUGG@LB@ |||||: ||||||||:|@LB@ CAAGUG AACCGAAAUC@LB@3'-CGC...GUUUU C AAUAA...AAG-5'@LB@ | |@LB@ 87 69@LB@@LB@@LB@Energy -17.65 kcal/mol@LB@Hybridization Energy -21.6632 kcal/mol@LB@Unfolding Energy - mRNA 3.44897 kcal/mol@LB@Unfolding Energy - sRNA 0.568254 kcal/mol@LB@@LB@Position - mRNA 282 -- 298@LB@Position - sRNA 70 -- 86@LB@Position Seed - mRNA 292 -- 298@LB@Position Seed - sRNA 70 -- 76@LB@ |
| 130 |
0.02238 |
0.5385 |
b4365 |
yjjQ |
-17.31 |
0.005324 |
260 -- 274 |
14 -- 28 |
putative transcriptional regulator |
|
_____________259_____________275\n_____________|_______________|\n5'-AGG...CAAGC_______________CAUGA...AUG-3'\n______________AGGGUUAAAAGAGGU\n______________|||||||||||||||\n______________UCCCAAUUUUCUCCA\n3'-CGC...GAAGU_______________CGGCG...AAG-5'\n_____________|_______________|\n_____________29______________13\n |
268 -- 274 |
14 -- 20 |
-23.2971 kcal/mol |
2.73817 kcal/mol |
3.24497 kcal/mol |
259 275@LB@ | |@LB@5'-AGG...CAAGC CAUGA...AUG-3'@LB@ AGGGUUAAAAGAGGU@LB@ |||||||||||||||@LB@ UCCCAAUUUUCUCCA@LB@3'-CGC...GAAGU CGGCG...AAG-5'@LB@ | |@LB@ 29 13@LB@@LB@@LB@Energy -17.31 kcal/mol@LB@Hybridization Energy -23.2971 kcal/mol@LB@Unfolding Energy - mRNA 2.73817 kcal/mol@LB@Unfolding Energy - sRNA 3.24497 kcal/mol@LB@@LB@Position - mRNA 260 -- 274@LB@Position - sRNA 14 -- 28@LB@Position Seed - mRNA 268 -- 274@LB@Position Seed - sRNA 14 -- 20@LB@ |
| 52 |
0.01055 |
0.5385 |
b2963 |
mltC |
-16.80 |
0.006570 |
83 -- 101 |
12 -- 32 |
membrane-bound lytic murein transglycosylase C |
|
_____________82____________________102\n_____________|_____________________|\n5'-CAU...UCCUG_____________________AUAUC...AUA-3'\n______________UUCGAGGGU__AAAGAGGUGC\n______________|||:|||||__||||||||||\n______________AAGUUCCCA__UUUCUCCACG\n3'-CGC...CACUG_________AU__________GCGAG...AAG-5'\n_____________|_____________________|\n_____________33____________________11\n |
95 -- 101 |
12 -- 18 |
-28.8763 kcal/mol |
6.26663 kcal/mol |
5.80657 kcal/mol |
82 102@LB@ | |@LB@5'-CAU...UCCUG AUAUC...AUA-3'@LB@ UUCGAGGGU AAAGAGGUGC@LB@ |||:||||| ||||||||||@LB@ AAGUUCCCA UUUCUCCACG@LB@3'-CGC...CACUG AU GCGAG...AAG-5'@LB@ | |@LB@ 33 11@LB@@LB@@LB@Energy -16.80 kcal/mol@LB@Hybridization Energy -28.8763 kcal/mol@LB@Unfolding Energy - mRNA 6.26663 kcal/mol@LB@Unfolding Energy - sRNA 5.80657 kcal/mol@LB@@LB@Position - mRNA 83 -- 101@LB@Position - sRNA 12 -- 32@LB@Position Seed - mRNA 95 -- 101@LB@Position Seed - sRNA 12 -- 18@LB@ |
| 90 |
0.01553 |
0.5385 |
b1043 |
csgC |
-15.92 |
0.009464 |
100 -- 115 |
69 -- 84 |
curli assembly protein |
|
_____________99_______________116\n_____________|________________|\n5'-GUG...GUGAC___G____________AACAA...UUA-3'\n______________UCA_GUUGGCUUUGGU\n______________|||_|||||||||:||\n______________AGU_CAACCGAAAUCA\n3'-CGC...UUUCA___G____________AUAAG...AAG-5'\n_____________|________________|\n_____________85_______________68\n |
109 -- 115 |
69 -- 75 |
-23.6243 kcal/mol |
7.14442 kcal/mol |
0.563592 kcal/mol |
99 116@LB@ | |@LB@5'-GUG...GUGAC G AACAA...UUA-3'@LB@ UCA GUUGGCUUUGGU@LB@ ||| |||||||||:||@LB@ AGU CAACCGAAAUCA@LB@3'-CGC...UUUCA G AUAAG...AAG-5'@LB@ | |@LB@ 85 68@LB@@LB@@LB@Energy -15.92 kcal/mol@LB@Hybridization Energy -23.6243 kcal/mol@LB@Unfolding Energy - mRNA 7.14442 kcal/mol@LB@Unfolding Energy - sRNA 0.563592 kcal/mol@LB@@LB@Position - mRNA 100 -- 115@LB@Position - sRNA 69 -- 84@LB@Position Seed - mRNA 109 -- 115@LB@Position Seed - sRNA 69 -- 75@LB@ |
| 154 |
0.02609 |
0.5541 |
b4195 |
ulaC |
-15.85 |
0.009707 |
6 -- 31 |
56 -- 80 |
L-ascorbate-specific enzyme IIA component of PTS |
|
_____________5__________________________32\n_____________|__________________________|\n______5'-GCGCG______GAGUACAAAAG_________UGGCG...UGG-3'\n______________GUUGGC___________CGAGUUGAG\n______________||||||___________|||||||||\n______________CAACCG___________GCUCAACUC\n3'-CGC...AAGUG______AAAUCAAUAA__________UUUGA...AAG-5'\n_____________|__________________________|\n_____________81_________________________55\n |
25 -- 31 |
56 -- 62 |
-23.4839 kcal/mol |
5.91355 kcal/mol |
1.71557 kcal/mol |
5 32@LB@ | |@LB@ 5'-GCGCG GAGUACAAAAG UGGCG...UGG-3'@LB@ GUUGGC CGAGUUGAG@LB@ |||||| |||||||||@LB@ CAACCG GCUCAACUC@LB@3'-CGC...AAGUG AAAUCAAUAA UUUGA...AAG-5'@LB@ | |@LB@ 81 55@LB@@LB@@LB@Energy -15.85 kcal/mol@LB@Hybridization Energy -23.4839 kcal/mol@LB@Unfolding Energy - mRNA 5.91355 kcal/mol@LB@Unfolding Energy - sRNA 1.71557 kcal/mol@LB@@LB@Position - mRNA 6 -- 31@LB@Position - sRNA 56 -- 80@LB@Position Seed - mRNA 25 -- 31@LB@Position Seed - sRNA 56 -- 62@LB@ |
| 75 |
0.01364 |
0.5385 |
b0107 |
hofB |
-15.68 |
0.010425 |
272 -- 289 |
69 -- 87 |
T2SE secretion family protein; P-loop ATPase superfamily protein |
|
_____________271_________________290\n_____________|___________________|\n5'-CCA...GAGGU_____________GG____CGAUG...CUU-3'\n______________GGUUCAUGUUG_C__UAGU\n______________:|||||:||||_|__||||\n______________UCAAGUGCAAC_G__AUCA\n3'-CGC...CGUUU___________C_AA____AUAAG...AAG-5'\n_____________|___________________|\n_____________88__________________68\n |
276 -- 282 |
77 -- 83 |
-18.3354 kcal/mol |
2.08484 kcal/mol |
0.569189 kcal/mol |
271 290@LB@ | |@LB@5'-CCA...GAGGU GG CGAUG...CUU-3'@LB@ GGUUCAUGUUG C UAGU@LB@ :|||||:|||| | ||||@LB@ UCAAGUGCAAC G AUCA@LB@3'-CGC...CGUUU C AA AUAAG...AAG-5'@LB@ | |@LB@ 88 68@LB@@LB@@LB@Energy -15.68 kcal/mol@LB@Hybridization Energy -18.3354 kcal/mol@LB@Unfolding Energy - mRNA 2.08484 kcal/mol@LB@Unfolding Energy - sRNA 0.569189 kcal/mol@LB@@LB@Position - mRNA 272 -- 289@LB@Position - sRNA 69 -- 87@LB@Position Seed - mRNA 276 -- 282@LB@Position Seed - sRNA 77 -- 83@LB@ |
| 129 |
0.02219 |
0.5385 |
b4034 |
malE |
-15.67 |
0.010476 |
105 -- 137 |
9 -- 40 |
maltose transporter subunit |
|
_____________104_______________________________138\n_____________|_________________________________|\n5'-AGG...GGGGC____G___AAG____AUG_________U_____AUAAA...UGG-3'\n______________GUAG_GGC___GAGG___GAAAGAGGU_GCCGU\n______________|:||_|:|___:|||___:||||||||_||||:\n______________CGUC_CUG___UUCC___UUUUCUCCA_CGGCG\n3'-CGC...UUGCC____A___AAG____CAA_______________AGGCAAAG-5'\n_____________|_________________________________|\n_____________41________________________________8\n |
125 -- 131 |
14 -- 20 |
-33.6959 kcal/mol |
8.2816 kcal/mol |
9.74463 kcal/mol |
104 138@LB@ | |@LB@5'-AGG...GGGGC G AAG AUG U AUAAA...UGG-3'@LB@ GUAG GGC GAGG GAAAGAGGU GCCGU@LB@ |:|| |:| :||| :|||||||| ||||:@LB@ CGUC CUG UUCC UUUUCUCCA CGGCG@LB@3'-CGC...UUGCC A AAG CAA AGGCAAAG-5'@LB@ | |@LB@ 41 8@LB@@LB@@LB@Energy -15.67 kcal/mol@LB@Hybridization Energy -33.6959 kcal/mol@LB@Unfolding Energy - mRNA 8.2816 kcal/mol@LB@Unfolding Energy - sRNA 9.74463 kcal/mol@LB@@LB@Position - mRNA 105 -- 137@LB@Position - sRNA 9 -- 40@LB@Position Seed - mRNA 125 -- 131@LB@Position Seed - sRNA 14 -- 20@LB@ |
| 31 |
0.005384 |
0.5385 |
b0159 |
mtn |
-14.65 |
0.015942 |
9 -- 52 |
71 -- 108 |
5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase |
|
_____________8____________________________________________53\n_____________|____________________________________________|\n___5'-GAUACGCC__C____G__CUC_A____________UC_______C_______ACGCC...UCU-3'\n______________CG_GAUC_CU___G_AGAUCCGCAGGA__UCAUGUU_GGUUUUA\n______________||_||||_||___|_|||||||||::|__|||:|||_||:||||\n______________GC_CUAG_GA___C_UCUAGGCGUUUU__AGUGCAA_CCGAAAU\n__________3'-C__________C________________CA_______________CAAUA...AAG-5'\n_____________|____________________________________________|\n_____________109__________________________________________70\n |
46 -- 52 |
71 -- 77 |
-39.2779 kcal/mol |
12.7007 kcal/mol |
11.9275 kcal/mol |
8 53@LB@ | |@LB@ 5'-GAUACGCC C G CUC A UC C ACGCC...UCU-3'@LB@ CG GAUC CU G AGAUCCGCAGGA UCAUGUU GGUUUUA@LB@ || |||| || | |||||||||::| |||:||| ||:||||@LB@ GC CUAG GA C UCUAGGCGUUUU AGUGCAA CCGAAAU@LB@ 3'-C C CA CAAUA...AAG-5'@LB@ | |@LB@ 109 70@LB@@LB@@LB@Energy -14.65 kcal/mol@LB@Hybridization Energy -39.2779 kcal/mol@LB@Unfolding Energy - mRNA 12.7007 kcal/mol@LB@Unfolding Energy - sRNA 11.9275 kcal/mol@LB@@LB@Position - mRNA 9 -- 52@LB@Position - sRNA 71 -- 108@LB@Position Seed - mRNA 46 -- 52@LB@Position Seed - sRNA 71 -- 77@LB@ |
| 60 |
0.01169 |
0.5385 |
b2441 |
eutB |
-14.17 |
0.019414 |
238 -- 261 |
12 -- 34 |
ethanolamine ammonia-lyase large subunit heavy chain |
|
_____________237______________________262\n_____________|________________________|\n5'-CUG...AUAUC_G_______AUG____________UGGCU...UGG-3'\n______________A_UUUAAGG___UAAAAGAGGUGC\n______________|_||:||||___||||||||||||\n______________U_AAGUUCC___AUUUUCUCCACG\n3'-CGC...GUCAC_G_______CA_____________GCGAG...AAG-5'\n_____________|________________________|\n_____________35_______________________11\n |
255 -- 261 |
12 -- 18 |
-24.3693 kcal/mol |
4.39141 kcal/mol |
5.80707 kcal/mol |
237 262@LB@ | |@LB@5'-CUG...AUAUC G AUG UGGCU...UGG-3'@LB@ A UUUAAGG UAAAAGAGGUGC@LB@ | ||:|||| ||||||||||||@LB@ U AAGUUCC AUUUUCUCCACG@LB@3'-CGC...GUCAC G CA GCGAG...AAG-5'@LB@ | |@LB@ 35 11@LB@@LB@@LB@Energy -14.17 kcal/mol@LB@Hybridization Energy -24.3693 kcal/mol@LB@Unfolding Energy - mRNA 4.39141 kcal/mol@LB@Unfolding Energy - sRNA 5.80707 kcal/mol@LB@@LB@Position - mRNA 238 -- 261@LB@Position - sRNA 12 -- 34@LB@Position Seed - mRNA 255 -- 261@LB@Position Seed - sRNA 12 -- 18@LB@ |
