| 5 |
0.0009313 |
0.5385 |
b3829 |
metE |
-12.51 |
0.038445 |
233 -- 242 |
75 -- 84 |
5-methyltetrahydropteroyltriglutamate- homocysteine S-methyltransferase |
|
_____________232________243\n_____________|__________|\n5'-GAG...UUCCC__________CUGCG...GUG-3'\n______________UCGCGUUGGC\n______________||:|||||||\n______________AGUGCAACCG\n3'-CGC...UUUCA__________AAAUC...AAG-5'\n_____________|__________|\n_____________85_________74\n |
236 -- 242 |
75 -- 81 |
-17.7887 kcal/mol |
4.77726 kcal/mol |
0.505918 kcal/mol |
232 243@LB@ | |@LB@5'-GAG...UUCCC CUGCG...GUG-3'@LB@ UCGCGUUGGC@LB@ ||:|||||||@LB@ AGUGCAACCG@LB@3'-CGC...UUUCA AAAUC...AAG-5'@LB@ | |@LB@ 85 74@LB@@LB@@LB@Energy -12.51 kcal/mol@LB@Hybridization Energy -17.7887 kcal/mol@LB@Unfolding Energy - mRNA 4.77726 kcal/mol@LB@Unfolding Energy - sRNA 0.505918 kcal/mol@LB@@LB@Position - mRNA 233 -- 242@LB@Position - sRNA 75 -- 84@LB@Position Seed - mRNA 236 -- 242@LB@Position Seed - sRNA 75 -- 81@LB@ |
| 71 |
0.01305 |
0.5385 |
b3843 |
ubiD |
-10.23 |
0.096580 |
123 -- 132 |
80 -- 89 |
3-octaprenyl-4-hydroxybenzoate decarboxylase |
|
_____________122________133\n_____________|__________|\n5'-CGC...CCGUC__________CUAAU...UGG-3'\n______________AGAGUUCACG\n______________|:||||||||\n______________UUUCAAGUGC\n3'-CGC...GGCGU__________AACCG...AAG-5'\n_____________|__________|\n_____________90_________79\n |
126 -- 132 |
80 -- 86 |
-13.04 kcal/mol |
2.30553 kcal/mol |
0.506316 kcal/mol |
122 133@LB@ | |@LB@5'-CGC...CCGUC CUAAU...UGG-3'@LB@ AGAGUUCACG@LB@ |:||||||||@LB@ UUUCAAGUGC@LB@3'-CGC...GGCGU AACCG...AAG-5'@LB@ | |@LB@ 90 79@LB@@LB@@LB@Energy -10.23 kcal/mol@LB@Hybridization Energy -13.04 kcal/mol@LB@Unfolding Energy - mRNA 2.30553 kcal/mol@LB@Unfolding Energy - sRNA 0.506316 kcal/mol@LB@@LB@Position - mRNA 123 -- 132@LB@Position - sRNA 80 -- 89@LB@Position Seed - mRNA 126 -- 132@LB@Position Seed - sRNA 80 -- 86@LB@ |
| 8 |
0.001355 |
0.5385 |
b3915 |
fieF |
-13.87 |
0.021962 |
2 -- 39 |
50 -- 90 |
ferrous iron and zinc transporter |
|
_____________1_____________________________________________40\n_____________|_____________________________________________|\n__________5'-A_________U_____AA___A_____________A_U__C_____ACGUU...AUA-3'\n______________AAAAGUUCA_CGUUG__GCU________UUGAGU_G_AG_AACUC\n______________|||||||||_|||||__|||________|:||||_|_||_|||||\n______________UUUUCAAGU_GCAAC__CGA________AGCUCA_C_UC_UUGAG\n3'-CGC...AGGCG____________________AAUCAAUA______A____U_____AGCUU...AAG-5'\n_____________|_____________________________________________|\n_____________91____________________________________________49\n |
4 -- 10 |
82 -- 88 |
-26.5193 kcal/mol |
8.24047 kcal/mol |
4.40801 kcal/mol |
1 40@LB@ | |@LB@ 5'-A U AA A A U C ACGUU...AUA-3'@LB@ AAAAGUUCA CGUUG GCU UUGAGU G AG AACUC@LB@ ||||||||| ||||| ||| |:|||| | || |||||@LB@ UUUUCAAGU GCAAC CGA AGCUCA C UC UUGAG@LB@3'-CGC...AGGCG AAUCAAUA A U AGCUU...AAG-5'@LB@ | |@LB@ 91 49@LB@@LB@@LB@Energy -13.87 kcal/mol@LB@Hybridization Energy -26.5193 kcal/mol@LB@Unfolding Energy - mRNA 8.24047 kcal/mol@LB@Unfolding Energy - sRNA 4.40801 kcal/mol@LB@@LB@Position - mRNA 2 -- 39@LB@Position - sRNA 50 -- 90@LB@Position Seed - mRNA 4 -- 10@LB@Position Seed - sRNA 82 -- 88@LB@ |
| 36 |
0.006672 |
0.5385 |
b3956 |
ppc |
-10.31 |
0.093393 |
270 -- 282 |
76 -- 88 |
phosphoenolpyruvate carboxylase |
|
_____________269___________283\n_____________|_____________|\n5'-CUU...CCAUC___GA________GAGAA...AAC-3'\n______________AAG__UGCGUUGG\n______________|||__::||||||\n______________UUC__GUGCAACC\n3'-CGC...GCGUU___AA________GAAAU...AAG-5'\n_____________|_____________|\n_____________89____________75\n |
276 -- 282 |
76 -- 82 |
-12.0501 kcal/mol |
1.22517 kcal/mol |
0.512479 kcal/mol |
269 283@LB@ | |@LB@5'-CUU...CCAUC GA GAGAA...AAC-3'@LB@ AAG UGCGUUGG@LB@ ||| ::||||||@LB@ UUC GUGCAACC@LB@3'-CGC...GCGUU AA GAAAU...AAG-5'@LB@ | |@LB@ 89 75@LB@@LB@@LB@Energy -10.31 kcal/mol@LB@Hybridization Energy -12.0501 kcal/mol@LB@Unfolding Energy - mRNA 1.22517 kcal/mol@LB@Unfolding Energy - sRNA 0.512479 kcal/mol@LB@@LB@Position - mRNA 270 -- 282@LB@Position - sRNA 76 -- 88@LB@Position Seed - mRNA 276 -- 282@LB@Position Seed - sRNA 76 -- 82@LB@ |
| 1 |
0 |
0 |
b3961 |
oxyR |
-149.65 |
0.000000 |
1 -- 105 |
1 -- 105 |
oxidative and nitrosative stress transcriptional regulator |
|
______________1________________________________________________________________________________________________________106\n______________|________________________________________________________________________________________________________|\n___________5'-_________________________________________________________________________________________________________UGUGA...GCG-3'\n______________AUCCUGGAGAUCCGCAAAAGUUCACGUUGGCUUUAGUUAUUCGAGUUGAGAAACUCUCGAAACGGGCAGUGACUUCAAGGGUUAAAAGAGGUGCCGCUCCGUUUC\n______________|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||\n______________UAGGACCUCUAGGCGUUUUCAAGUGCAACCGAAAUCAAUAAGCUCAACUCUUUGAGAGCUUUGCCCGUCACUGAAGUUCCCAAUUUUCUCCACGGCGAGGCAAAG\n_______3'-CGCC_________________________________________________________________________________________________________-5'\n_____________|________________________________________________________________________________________________________|\n_____________106______________________________________________________________________________________________________1\n |
99 -- 105 |
1 -- 7 |
-211.4 kcal/mol |
28.7244 kcal/mol |
33.0219 kcal/mol |
1 106@LB@ | |@LB@ 5'- UGUGA...GCG-3'@LB@ AUCCUGGAGAUCCGCAAAAGUUCACGUUGGCUUUAGUUAUUCGAGUUGAGAAACUCUCGAAACGGGCAGUGACUUCAAGGGUUAAAAGAGGUGCCGCUCCGUUUC@LB@ |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||@LB@ UAGGACCUCUAGGCGUUUUCAAGUGCAACCGAAAUCAAUAAGCUCAACUCUUUGAGAGCUUUGCCCGUCACUGAAGUUCCCAAUUUUCUCCACGGCGAGGCAAAG@LB@ 3'-CGCC -5'@LB@ | |@LB@ 106 1@LB@@LB@@LB@Energy -149.65 kcal/mol@LB@Hybridization Energy -211.4 kcal/mol@LB@Unfolding Energy - mRNA 28.7244 kcal/mol@LB@Unfolding Energy - sRNA 33.0219 kcal/mol@LB@@LB@Position - mRNA 1 -- 105@LB@Position - sRNA 1 -- 105@LB@Position Seed - mRNA 99 -- 105@LB@Position Seed - sRNA 1 -- 7@LB@ |
| 174 |
0.03067 |
0.5559 |
b4005 |
purD |
-11.17 |
0.066076 |
4 -- 22 |
73 -- 90 |
phosphoribosylglycinamide synthetase phosphoribosylamine-glycine ligase |
|
_____________3___________________23\n_____________|___________________|\n________5'-GUG________CU__A______CUGAC...GUA-3'\n______________AAAGGUUC__CG_UGGCUU\n______________|||:||||__||_||||||\n______________UUUUCAAG__GC_ACCGAA\n3'-CGC...AGGCG________U___A______AUCAA...AAG-5'\n_____________|___________________|\n_____________91__________________72\n |
5 -- 11 |
83 -- 89 |
-16.9563 kcal/mol |
5.26463 kcal/mol |
0.517799 kcal/mol |
3 23@LB@ | |@LB@ 5'-GUG CU A CUGAC...GUA-3'@LB@ AAAGGUUC CG UGGCUU@LB@ |||:|||| || ||||||@LB@ UUUUCAAG GC ACCGAA@LB@3'-CGC...AGGCG U A AUCAA...AAG-5'@LB@ | |@LB@ 91 72@LB@@LB@@LB@Energy -11.17 kcal/mol@LB@Hybridization Energy -16.9563 kcal/mol@LB@Unfolding Energy - mRNA 5.26463 kcal/mol@LB@Unfolding Energy - sRNA 0.517799 kcal/mol@LB@@LB@Position - mRNA 4 -- 22@LB@Position - sRNA 73 -- 90@LB@Position Seed - mRNA 5 -- 11@LB@Position Seed - sRNA 83 -- 89@LB@ |
| 143 |
0.02402 |
0.5467 |
b4029 |
yjbH |
-10.20 |
0.097639 |
107 -- 117 |
75 -- 85 |
DUF940 family extracellular polysaccharide protein |
|
_____________106_________118\n_____________|___________|\n5'-GCG...CAUUA___________CUCGC...AUU-3'\n______________UUUAUGUUGGC\n______________||:|:||||||\n______________AAGUGCAACCG\n3'-CGC...UUUUC___________AAAUC...AAG-5'\n_____________|___________|\n_____________86__________74\n |
111 -- 117 |
75 -- 81 |
-14.6823 kcal/mol |
3.97178 kcal/mol |
0.509769 kcal/mol |
106 118@LB@ | |@LB@5'-GCG...CAUUA CUCGC...AUU-3'@LB@ UUUAUGUUGGC@LB@ ||:|:||||||@LB@ AAGUGCAACCG@LB@3'-CGC...UUUUC AAAUC...AAG-5'@LB@ | |@LB@ 86 74@LB@@LB@@LB@Energy -10.20 kcal/mol@LB@Hybridization Energy -14.6823 kcal/mol@LB@Unfolding Energy - mRNA 3.97178 kcal/mol@LB@Unfolding Energy - sRNA 0.509769 kcal/mol@LB@@LB@Position - mRNA 107 -- 117@LB@Position - sRNA 75 -- 85@LB@Position Seed - mRNA 111 -- 117@LB@Position Seed - sRNA 75 -- 81@LB@ |
| 129 |
0.02219 |
0.5385 |
b4034 |
malE |
-15.67 |
0.010476 |
105 -- 137 |
9 -- 40 |
maltose transporter subunit |
|
_____________104_______________________________138\n_____________|_________________________________|\n5'-AGG...GGGGC____G___AAG____AUG_________U_____AUAAA...UGG-3'\n______________GUAG_GGC___GAGG___GAAAGAGGU_GCCGU\n______________|:||_|:|___:|||___:||||||||_||||:\n______________CGUC_CUG___UUCC___UUUUCUCCA_CGGCG\n3'-CGC...UUGCC____A___AAG____CAA_______________AGGCAAAG-5'\n_____________|_________________________________|\n_____________41________________________________8\n |
125 -- 131 |
14 -- 20 |
-33.6959 kcal/mol |
8.2816 kcal/mol |
9.74463 kcal/mol |
104 138@LB@ | |@LB@5'-AGG...GGGGC G AAG AUG U AUAAA...UGG-3'@LB@ GUAG GGC GAGG GAAAGAGGU GCCGU@LB@ |:|| |:| :||| :|||||||| ||||:@LB@ CGUC CUG UUCC UUUUCUCCA CGGCG@LB@3'-CGC...UUGCC A AAG CAA AGGCAAAG-5'@LB@ | |@LB@ 41 8@LB@@LB@@LB@Energy -15.67 kcal/mol@LB@Hybridization Energy -33.6959 kcal/mol@LB@Unfolding Energy - mRNA 8.2816 kcal/mol@LB@Unfolding Energy - sRNA 9.74463 kcal/mol@LB@@LB@Position - mRNA 105 -- 137@LB@Position - sRNA 9 -- 40@LB@Position Seed - mRNA 125 -- 131@LB@Position Seed - sRNA 14 -- 20@LB@ |
| 151 |
0.02561 |
0.5485 |
b4041 |
plsB |
-9.39 |
0.134646 |
197 -- 210 |
74 -- 86 |
glycerol-3-phosphate O-acyltransferase |
|
_____________196____________211\n_____________|______________|\n5'-UCG...ACAUC________CC____GGCCA...UGG-3'\n______________GUUUAUGU__GGCU\n______________|||:|:||__||||\n______________CAAGUGCA__CCGA\n3'-CGC...GUUUU________A_____AAUCA...AAG-5'\n_____________|______________|\n_____________87_____________73\n |
198 -- 204 |
79 -- 85 |
-13.0466 kcal/mol |
3.14742 kcal/mol |
0.513318 kcal/mol |
196 211@LB@ | |@LB@5'-UCG...ACAUC CC GGCCA...UGG-3'@LB@ GUUUAUGU GGCU@LB@ |||:|:|| ||||@LB@ CAAGUGCA CCGA@LB@3'-CGC...GUUUU A AAUCA...AAG-5'@LB@ | |@LB@ 87 73@LB@@LB@@LB@Energy -9.39 kcal/mol@LB@Hybridization Energy -13.0466 kcal/mol@LB@Unfolding Energy - mRNA 3.14742 kcal/mol@LB@Unfolding Energy - sRNA 0.513318 kcal/mol@LB@@LB@Position - mRNA 197 -- 210@LB@Position - sRNA 74 -- 86@LB@Position Seed - mRNA 198 -- 204@LB@Position Seed - sRNA 79 -- 85@LB@ |
| 190 |
0.03345 |
0.5559 |
b4090 |
rpiB |
-6.75 |
0.355761 |
259 -- 286 |
57 -- 78 |
ribose 5-phosphate isomerase B/allose 6-phosphate isomerase |
|
_____________258__________________________287\n_____________|____________________________|\n5'-AAC...AAUAG____ACA________AGCG___C_____AGUGA...AAG-3'\n______________UGGC___UUUAGUUG____UGG_GUUGA\n______________||||___|||||||:____:|:_|||||\n______________ACCG___AAAUCAAU____GCU_CAACU\n3'-CGC...GUGCA_______________AA___________CUUUG...AAG-5'\n_____________|____________________________|\n_____________79___________________________56\n |
267 -- 273 |
67 -- 73 |
-15.2709 kcal/mol |
7.30632 kcal/mol |
1.21856 kcal/mol |
258 287@LB@ | |@LB@5'-AAC...AAUAG ACA AGCG C AGUGA...AAG-3'@LB@ UGGC UUUAGUUG UGG GUUGA@LB@ |||| |||||||: :|: |||||@LB@ ACCG AAAUCAAU GCU CAACU@LB@3'-CGC...GUGCA AA CUUUG...AAG-5'@LB@ | |@LB@ 79 56@LB@@LB@@LB@Energy -6.75 kcal/mol@LB@Hybridization Energy -15.2709 kcal/mol@LB@Unfolding Energy - mRNA 7.30632 kcal/mol@LB@Unfolding Energy - sRNA 1.21856 kcal/mol@LB@@LB@Position - mRNA 259 -- 286@LB@Position - sRNA 57 -- 78@LB@Position Seed - mRNA 267 -- 273@LB@Position Seed - sRNA 67 -- 73@LB@ |
