Freiburg RNA Tools
CopraRNA - Results
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IFF
CopraRNA 3783103

Input and runtime details for job 3783103 (precomputed example)

Input Parameters

? sRNA sequences[.fa]
? Putative target sequences (organism of interest)[.fa]
? Extract sequences aroundstart codon
? nt up (1-300)200
? nt down (1-300)100
? Minimal rel. cluster size0.5
? Iterative organism subset analysis (beta)no

Job ID 3783103 (server version trunk)

?Job Submitted & Queued@ Mon Oct 27 19:33:18 CET 2014
?Processing Started@ Mon Oct 27 19:33:21 CET 2014
?CopraRNA Finished & Post-Processing@ Mon Oct 27 23:30:44 CET 2014
?Post-Processing Finished@ Mon Oct 27 23:30:45 CET 2014
?Job Completed@ Mon Oct 27 23:31:02 CET 2014
 DIRECT ACCESS: http://rna.informatik.uni-freiburg.de:80/RetrieveResults.jsp?jobID=3783103&toolName=CopraRNA ( 30 days expiry )

The job description you specified

RprA

Output download complete results [zip]

Downloadable files

[csv]
[txt]
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[txt] [svg]


heatmap

? Conserved, identified interactions for NC_000913 Escherichia coli str. K-12 substr. MG1655

Sort by selecting a column name:
Rank CopraRNA p-value CopraRNA fdr value Locus Tag Gene Name Energy [kcal/mol] IntaRNA p-value Position mRNA Position sRNA Annotation Additional homologs sampled p-values
1 2.959e-05 0.05176 b1921 fliZ -13.27 0.038544 246 -- 263 63 -- 78 RpoS antagonist; putative regulator of FliA activity   0
2 2.966e-05 0.05176 b3281 aroE -14.72 0.016013 230 -- 259 45 -- 75 dehydroshikimate reductase NAD(P)-binding   0
3 4.255e-05 0.05176 b2741 rpoS -16.41 0.005073 67 -- 107 33 -- 71 RNA polymerase sigma S (sigma 38) factor   0
4 6.142e-05 0.05603 b0680 glnS -21.73 0.000038 155 -- 198 34 -- 77 glutamyl-tRNA synthetase   0
5 0.0001501 0.1096 b2752 cysD -12.18 0.070104 103 -- 131 46 -- 74 sulfate adenylyltransferase subunit 2   0
6 0.0004944 0.3007 b3724 phoU -16.34 0.005331 157 -- 192 43 -- 78 negative regulator of PhoR/PhoB two-component regulator   0
7 0.0006823 0.3557 b0958 sulA -14.54 0.017878 212 -- 245 46 -- 76 SOS cell division inhibitor   0
8 0.0008439 0.3686 b1042 csgA -9.14 0.288859 82 -- 99 45 -- 70 curlin subunit amyloid curli fibers cryptic   3
9 0.000909 0.3686 b0741 pal -17.72 0.001885 30 -- 75 30 -- 71 peptidoglycan-associated outer membrane lipoprotein   0
10 0.001352 0.4934 b3527 yhjJ -15.58 0.009049 153 -- 204 31 -- 75 putative periplasmic M16 family chaperone   0

Details of Selected Interaction Download Interaction Details

mRNA

sRNA

		

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Results are computed with CopraRNA version 2.0.1