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CopraRNA 6793193

Input and runtime details for job 6793193 (precomputed example)

Sequence input

? sRNA sequences[.fa]
? Putative target sequences (organism of interest)[.fa]
? Extract sequences aroundstart codon
? nt up (1-300)200
? nt down (1-300)100

CopraRNA parameters

? Consensus prediction off
? p-value combinationno
? p-value filtering (0=off)0

IntaRNA parameters

? Target folding window size150
? Target max. basepair distance100

Job ID 6793193 (server version trunk)

?Job Submitted & Queued@ Fri Feb 16 15:27:03 CET 2018
?CopraRNA Started@ Fri Feb 16 15:27:32 CET 2018
?CopraRNA Finished & Post-Processing@ Fri Feb 16 21:26:02 CET 2018
?Post-Processing Finished@ Fri Feb 16 21:26:10 CET 2018
?Job Completed@ Fri Feb 16 21:26:45 CET 2018
 DIRECT ACCESS: http://rna.informatik.uni-freiburg.de/RetrieveResults.jsp?jobID=6793193&toolName=CopraRNA ( 30 days expiry )

Description of the job

RprA

Output download complete results [zip]

Downloadable files

[csv]
[txt]
[csv]
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heatmap

? Conserved, identified interactions for NC_000913 Escherichia coli str. K-12 substr. MG1655

Sort by selecting a column name:
Rank CopraRNA p-value CopraRNA fdr value Locus Tag Gene Name Energy [kcal/mol] IntaRNA p-value Position mRNA Position sRNA Annotation Additional homologs
1 5.015e-10 1.765e-06 b0680 glnS -23.71 0.000006 155 -- 198 34 -- 77 glutamyl-tRNA synthetase  
2 1.464e-07 0.0002576 b2741 rpoS -16.90 0.006155 67 -- 107 33 -- 71 RNA polymerase sigma S (sigma 38) factor  
3 3.356e-06 0.003937 b3724 phoU -15.84 0.012477 157 -- 192 43 -- 78 negative regulator of PhoR/PhoB two-component regulator  
4 8.9e-06 0.006694 b3281 aroE -13.87 0.039990 230 -- 259 45 -- 75 dehydroshikimate reductase NAD(P)-binding  
5 9.512e-06 0.006694 b4006 purH -17.40 0.004319 188 -- 204 31 -- 46 IMP cyclohydrolase and phosphoribosylaminoimidazolecarboxamide formyltransferase  
6 1.32e-05 0.00774 b0475 hemH -21.46 0.000115 123 -- 162 34 -- 75 ferrochelatase  
7 1.819e-05 0.009142 b1849 purT -22.68 0.000026 168 -- 199 33 -- 74 phosphoribosylglycinamide formyltransferase 2  
8 3.984e-05 0.01752 b2752 cysD -11.53 0.128779 103 -- 132 45 -- 74 sulfate adenylyltransferase subunit 2  
9 4.743e-05 0.01855 b1204 pth -17.38 0.004387 162 -- 190 43 -- 74 peptidyl-tRNA hydrolase  
10 6.564e-05 0.0231 b3458 livK -17.14 0.005196 153 -- 196 35 -- 71 leucine transporter subunit  
11 9.086e-05 0.0245 b3337 bfd -12.11 0.098410 247 -- 280 34 -- 76 bacterioferritin-associated ferredoxin  
12 9.939e-05 0.0245 b2308 hisQ -13.21 0.056865 186 -- 218 34 -- 75 histidine ABC transporter permease  
13 0.0001005 0.0245 b1921 fliZ -13.92 0.038869 246 -- 263 63 -- 78 RpoS antagonist; putative regulator of FliA activity  
14 0.0001025 0.0245 b4051 qorA -14.73 0.024599 192 -- 224 48 -- 76 quinone oxidoreductase NADPH-dependent  
15 0.0001044 0.0245 b0741 pal -16.61 0.007509 30 -- 75 30 -- 71 peptidoglycan-associated outer membrane lipoprotein  
16 0.00012 0.02638 b3089 sstT -15.87 0.012233 203 -- 224 42 -- 75 sodium:serine/threonine symporter  
17 0.0001292 0.02674 b1854 pykA -13.69 0.043994 133 -- 157 36 -- 68 pyruvate kinase II  
18 0.0001516 0.02826 b2817 amiC -14.62 0.026197 167 -- 204 31 -- 70 N-acetylmuramoyl-L-alanine amidase  
19 0.0001526 0.02826 b1040 csgD -18.47 0.001904 103 -- 117 60 -- 74 csgBAC operon transcriptional regulator b3520
20 0.0001757 0.02926 b4175 hflC -15.67 0.013919 175 -- 193 40 -- 75 HflB protease modulator specific for phage lambda cII repressor  
21 0.0001827 0.02926 b1937 fliE -13.91 0.039102 192 -- 221 38 -- 77 flagellar basal-body component  
22 0.0001899 0.02926 b2562 yfhL -14.77 0.023959 28 -- 42 42 -- 56 putative 4Fe-4S cluster-containing protein  
23 0.0001955 0.02926 b3846 fadB -13.56 0.047358 39 -- 83 35 -- 77 fused 3-hydroxybutyryl-CoA epimerase/delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase/enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase  
24 0.0002076 0.02926 b3459 panM -18.00 0.002751 9 -- 48 38 -- 75 PanD autocleavage accelerator panothenate synthesis  
25 0.0002079 0.02926 b4064 ghxP -13.58 0.046769 115 -- 151 38 -- 73 guanine/hypoxanthine permease high affinity; guanine/hypoxanthine:H+ symporter  
26 0.0002514 0.03403 b4551 yheV -11.83 0.112444 191 -- 229 42 -- 77 DUF2387 family putative metal-binding protein  
27 0.0003358 0.04376 b1784 yeaH -12.48 0.082239 130 -- 197 41 -- 99 UPF0229 family protein  
28 0.0004009 0.04965 b3511 hdeD -17.16 0.005105 126 -- 176 35 -- 75 acid-resistance membrane protein  
29 0.0004091 0.04965 b0958 sulA -15.92 0.011809 212 -- 243 48 -- 76 SOS cell division inhibitor  
30 0.0004324 0.05073 b3364 tsgA -16.38 0.008733 203 -- 236 38 -- 75 putative transporter  
31 0.0004964 0.05552 b2325 yfcL -14.31 0.031288 272 -- 297 32 -- 57 uncharacterized protein  
32 0.0005139 0.05552 b4070 nrfA -17.83 0.003136 66 -- 107 41 -- 78 nitrite reductase formate-dependent cytochrome  
33 0.0005309 0.05552 b2905 gcvT -15.66 0.013961 227 -- 265 34 -- 74 aminomethyltransferase tetrahydrofolate-dependent subunit (T protein) of glycine cleavage complex  
34 0.0005364 0.05552 b4244 pyrI -10.55 0.196904 198 -- 215 60 -- 77 aspartate carbamoyltransferase regulatory subunit  
35 0.0005607 0.05638 b1434 ydcN -11.45 0.133710 242 -- 253 62 -- 74 putative DNA-binding transcriptional regulator b1508 b1299
36 0.0006028 0.05893 b2398 yfeC -12.67 0.075056 159 -- 178 42 -- 76 DUF1323 family putative DNA-binding protein b2399
37 0.0006599 0.0618 b3399 yrfG -16.99 0.005777 176 -- 197 35 -- 56 GMP/IMP nucleotidase  
38 0.0006674 0.0618 b2069 yegD -11.14 0.153468 57 -- 84 48 -- 76 Hsp70 chaperone family protein  
39 0.0006857 0.06187 b1305 pspB -16.08 0.010660 268 -- 296 48 -- 75 psp operon transcription co-activator  
40 0.0008945 0.07693 b0525 ppiB -7.31 0.578113 284 -- 298 61 -- 76 peptidyl-prolyl cis-trans isomerase B (rotamase B)  
41 0.0008963 0.07693 b1378 pfo -13.27 0.055135 136 -- 164 58 -- 78 pyruvate-flavodoxin oxidoreductase  
42 0.0009586 0.08031 b3747 kup -11.44 0.134185 159 -- 185 49 -- 77 potassium transporter  
43 0.00107 0.08759 b4036 lamB -10.48 0.202041 185 -- 197 39 -- 51 maltose outer membrane porin (maltoporin)  
44 0.001243 0.09943 b3064 tsaD -15.06 0.020167 98 -- 131 41 -- 82 tRNA(ANN) t(6)A37 threonylcarbamoyladenosine modification protein; glycation binding protein  
45 0.001296 0.1014 b2465 tktB -16.90 0.006168 210 -- 248 39 -- 78 transketolase 2 thiamine triphosphate-binding  
46 0.001357 0.1038 b1235 rssB -13.33 0.053430 184 -- 194 40 -- 50 PcnB-degradosome interaction factor; response regulator  
47 0.001402 0.105 b2297 pta -18.38 0.002042 9 -- 40 45 -- 75 phosphate acetyltransferase  
48 0.001595 0.1153 b4567 yjjZ -9.54 0.291590 92 -- 131 37 -- 74 uncharacterized protein  
49 0.00161 0.1153 b0655 gltI -14.54 0.027470 112 -- 169 31 -- 74 glutamate/aspartate periplasmic binding protein  
50 0.001668 0.1153 b2821 ptrA -10.19 0.227412 3 -- 12 46 -- 55 protease III  
51 0.001671 0.1153 b3527 yhjJ -13.34 0.053290 153 -- 204 31 -- 75 putative periplasmic M16 family chaperone  
52 0.001789 0.121 b1799 dmlR -11.56 0.127346 72 -- 108 34 -- 68 transcriptional activator of dmlA b3060
53 0.001859 0.1218 b0529 folD -11.41 0.136116 200 -- 226 61 -- 85 bifunctional 5 10-methylene-tetrahydrofolate dehydrogenase/ 5 10-methylene-tetrahydrofolate cyclohydrolase  
54 0.00187 0.1218 b3607 cysE -14.87 0.022582 98 -- 129 42 -- 78 serine acetyltransferase  
55 0.001955 0.1223 b0840 deoR -10.34 0.214583 216 -- 260 60 -- 103 deoxyribose-5-phosphate-inducible deoxyribose operon transcriptional repressor; repressor of nupG and tsx  
56 0.001982 0.1223 b2304 yfcH -16.49 0.008143 193 -- 225 40 -- 77 putative NAD-dependent nucleotide-sugar epimerase  
57 0.002011 0.1223 b3057 bacA -16.67 0.007222 149 -- 193 41 -- 71 undecaprenyl pyrophosphate phosphatase  
58 0.002015 0.1223 b0189 rof -8.06 0.473679 29 -- 61 40 -- 71 modulator of Rho-dependent transcription termination  
59 0.002304 0.1363 b2508 guaB -11.36 0.139274 1 -- 26 38 -- 71 IMP dehydrogenase  
60 0.002324 0.1363 b0881 clpS -11.74 0.117068 9 -- 15 40 -- 46 regulatory protein for ClpA substrate specificity  
61 0.002486 0.1417 b1487 ddpA -13.46 0.049908 168 -- 192 43 -- 71 D D-dipeptide ABC transporter periplasmic binding protein  
62 0.002558 0.1417 b3579 yiaO -11.31 0.142375 245 -- 258 62 -- 75 2 3-diketo-L-gulonate-binding periplasmic protein  
63 0.002639 0.1417 b2751 cysN -11.35 0.139541 181 -- 198 34 -- 49 sulfate adenylyltransferase subunit 1  
64 0.002655 0.1417 b0876 ybjD -10.33 0.215429 171 -- 200 39 -- 78 putative OLD family ATP-dependent endonuclease; DUF2813 family protein  
65 0.002677 0.1417 b0584 fepA -11.47 0.132508 209 -- 249 37 -- 78 ferrienterobactin outer membrane transporter  
66 0.002697 0.1417 b1306 pspC -11.06 0.158336 44 -- 64 55 -- 75 psp operon transcription co-activator  
67 0.002719 0.1417 b3454 livF -11.67 0.120634 106 -- 122 40 -- 58 branched-chain amino acid ABC transporter ATPase  
68 0.002787 0.1417 b3001 gpr -15.31 0.017381 36 -- 59 44 -- 69 L-glyceraldehyde 3-phosphate reductase  
69 0.002809 0.1417 b1925 fliS -16.42 0.008504 133 -- 153 57 -- 74 flagellar protein potentiates polymerization  
70 0.002881 0.1417 b4144 yjeI -14.17 0.033933 177 -- 235 31 -- 99 DUF4156 family lipoprotein  
71 0.002886 0.1417 b2431 yfeX -11.26 0.145044 235 -- 277 40 -- 74 porphyrinogen oxidase cytoplasmic  
72 0.002899 0.1417 b3688 yidQ -12.98 0.064171 231 -- 261 39 -- 71 DUF1375 family outer membrane protein  
73 0.00298 0.1437 b0474 adk -13.48 0.049381 180 -- 198 34 -- 50 adenylate kinase  
74 0.003066 0.1452 b0467 priC -11.71 0.118543 157 -- 193 43 -- 75 primosomal replication protein N''  
75 0.003119 0.1452 b0871 poxB -11.12 0.154817 181 -- 203 32 -- 50 pyruvate dehydrogenase thiamine triphosphate-binding FAD-binding  
76 0.003141 0.1452 b0187 yaeR -8.98 0.354982 261 -- 292 48 -- 78 putative lyase  
77 0.003184 0.1452 b4406 yaeP -9.70 0.274250 222 -- 254 40 -- 71 UPF0253 family protein  
78 0.003218 0.1452 b1641 slyB -13.21 0.056987 203 -- 235 43 -- 75 outer membrane lipoprotein  
79 0.00332 0.1462 b1845 ptrB -10.90 0.169644 42 -- 70 35 -- 70 protease II  
80 0.003376 0.1462 b3098 yqjD -10.12 0.233597 155 -- 204 31 -- 75 membrane-anchored ribosome-binding protein  
81 0.003429 0.1462 b0413 nrdR -16.32 0.009130 136 -- 177 33 -- 64 Nrd regulon repressor  
82 0.00343 0.1462 b4043 lexA -10.80 0.176998 163 -- 196 40 -- 72 transcriptional repressor of SOS regulon  
83 0.003448 0.1462 b4231 yjfF -16.06 0.010834 60 -- 72 39 -- 51 putative sugar ABC transporter permease  
84 0.003656 0.1509 b0827 moeA -7.84 0.503176 157 -- 203 32 -- 75 molybdopterin molybdenumtransferase; molybdopterin biosynthesis protein  
85 0.003677 0.1509 b0813 rhtA -9.71 0.273689 106 -- 123 34 -- 46 threonine and homoserine efflux system  
86 0.003687 0.1509 b0774 bioA -10.95 0.166636 92 -- 152 44 -- 98 7 8-diaminopelargonic acid synthase PLP-dependent  
87 0.003844 0.1538 b3124 garK -12.12 0.097757 2 -- 34 58 -- 88 glycerate kinase I  
88 0.003962 0.1538 b3084 rlmG -11.78 0.115170 185 -- 197 40 -- 51 23S rRNA m(2)G1835 methyltransferase SAM-dependent  
89 0.003963 0.1538 b1252 tonB -10.58 0.194225 25 -- 43 64 -- 82 membrane spanning protein in TonB-ExbB-ExbD transport complex  
90 0.004009 0.1538 b3152 yraR -13.99 0.037452 47 -- 72 45 -- 75 putative nucleoside-diphosphate-sugar epimerase  
91 0.00412 0.1538 b0931 pncB -13.41 0.051237 255 -- 284 48 -- 77 nicotinate phosphoribosyltransferase  
92 0.004122 0.1538 b3912 cpxR -15.13 0.019325 106 -- 130 39 -- 76 response regulator in two-component regulatory system with CpxA  
93 0.004161 0.1538 b4221 tamB -11.98 0.104509 154 -- 185 44 -- 78 translocation and assembly module for autotransporter export inner membrane subunit  
94 0.004209 0.1538 b1798 leuE -8.23 0.450453 21 -- 61 47 -- 73 leucine efflux protein  
95 0.004386 0.1538 b1083 flgL -11.72 0.118200 146 -- 194 40 -- 76 flagellar hook-filament junction protein  
96 0.004462 0.1538 b3260 dusB -10.19 0.227205 72 -- 117 38 -- 74 tRNA-dihydrouridine synthase B  
97 0.004509 0.1538 b0465 mscK -15.00 0.020897 217 -- 248 49 -- 74 mechanosensitive channel protein intermediate conductance K+ regulated  
98 0.004518 0.1538 b2193 narP -14.47 0.028569 155 -- 204 31 -- 74 response regulator in two-component regulatory system with NarQ  
99 0.004523 0.1538 b1516 lsrB -10.33 0.215118 8 -- 28 39 -- 59 autoinducer 2-binding protein  
100 0.004525 0.1538 b2550 yphH -8.03 0.477033 31 -- 47 39 -- 54 putative DNA-binding transcriptional regulator  
101 0.004534 0.1538 b2079 baeR -10.16 0.230535 155 -- 191 34 -- 71 response regulator in two-component regulatory system with BaeS  
102 0.004593 0.1538 b0343 lacY -16.22 0.009713 12 -- 55 39 -- 78 lactose permease  
103 0.004595 0.1538 b3554 yiaF -10.61 0.191588 8 -- 38 46 -- 75 barrier effect co-colonization resistance factor; DUF3053 family lipoprotein  
104 0.004609 0.1538 b3405 ompR -12.19 0.094658 154 -- 190 42 -- 77 response regulator in two-component regulatory system with EnvZ  
105 0.004683 0.1538 b3349 slyD -10.61 0.192215 166 -- 197 39 -- 73 FKBP-type peptidyl prolyl cis-trans isomerase (rotamase)  
106 0.004704 0.1538 b0995 torR -15.76 0.013096 243 -- 292 33 -- 70 response regulator in two-component regulatory system with TorS  
107 0.004745 0.1538 b2413 cysZ -9.47 0.298503 222 -- 238 58 -- 74 sulfate transporter sulfite inhibited  
108 0.004771 0.1538 b2594 rluD -7.24 0.588975 189 -- 206 62 -- 78 23S rRNA pseudouridine(1911 1915 1917) synthase  
109 0.004772 0.1538 b2580 ung -9.28 0.319241 25 -- 55 36 -- 70 uracil-DNA-glycosylase  
110 0.004806 0.1538 b1429 tehA -12.16 0.096068 32 -- 62 44 -- 75 potassium-tellurite ethidium and proflavin transporter  
111 0.004903 0.1545 b1735 chbR -11.17 0.151186 109 -- 138 30 -- 50 repressor of chb operon for N N'-diacetylchitobiose utilization  
112 0.004986 0.1545 b0118 acnB -15.18 0.018766 221 -- 251 38 -- 71 aconitate hydratase 2; aconitase B; 2-methyl-cis-aconitate hydratase  
113 0.004991 0.1545 b0888 trxB -9.59 0.285839 209 -- 223 61 -- 75 thioredoxin reductase FAD/NAD(P)-binding  
114 0.005004 0.1545 b0025 ribF -11.63 0.123109 210 -- 237 43 -- 71 bifunctional riboflavin kinase/FAD synthetase  
115 0.005088 0.155 b4131 cadA -16.57 0.007707 197 -- 237 37 -- 75 lysine decarboxylase acid-inducible  
116 0.005119 0.155 b2513 yfgM -8.84 0.371642 84 -- 101 60 -- 75 ancillary SecYEG translocon subunit; putative anti-RcsB factor  
117 0.005152 0.155 b2235 nrdB -9.05 0.346139 190 -- 222 48 -- 77 ribonucleoside-diphosphate reductase 1 beta subunit ferritin-like protein  
118 0.005291 0.1553 b0481 ybaK -9.02 0.349126 203 -- 225 45 -- 75 Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase  
119 0.005328 0.1553 b3417 malP -6.58 0.680720 220 -- 257 42 -- 71 maltodextrin phosphorylase  
120 0.005393 0.1553 b0523 purE -13.83 0.040764 102 -- 146 30 -- 75 N5-carboxyaminoimidazole ribonucleotide mutase  
121 0.005439 0.1553 b1640 anmK -7.89 0.496680 290 -- 297 63 -- 70 anhydro-N-acetylmuramic acid kinase  
122 0.005462 0.1553 b3143 yraI -10.36 0.212908 69 -- 81 40 -- 51 putative periplasmic pilin chaperone b0939 b4316 b0531
123 0.005464 0.1553 b3746 ravA -13.51 0.048673 243 -- 263 41 -- 65 hexameric AAA+ MoxR family ATPase putative molecular chaperone  
124 0.005471 0.1553 b1249 clsA -8.47 0.418250 164 -- 196 34 -- 71 cardiolipin synthase 1  
125 0.005556 0.1564 b3384 trpS -12.26 0.091693 207 -- 244 40 -- 100 tryptophanyl-tRNA synthetase  
126 0.00562 0.157 b3017 ftsP -15.30 0.017476 190 -- 242 38 -- 84 septal ring component that protects the divisome from stress; multicopy suppressor of ftsI(Ts)  
127 0.005686 0.1575 b1176 minC -17.54 0.003902 3 -- 40 35 -- 74 inhibitor of FtsZ ring polymerization  
128 0.005802 0.1577 b2889 idi -10.08 0.237455 129 -- 166 33 -- 74 isopentenyl diphosphate isomerase  
129 0.005822 0.1577 b0713 ybgL -14.99 0.021088 226 -- 247 61 -- 83 UPF0271 family protein  
130 0.005881 0.1577 b0965 yccU -10.68 0.186123 93 -- 125 46 -- 74 putative CoA-binding protein  
131 0.005914 0.1577 b2360 yfdQ -15.68 0.013816 114 -- 143 46 -- 74 CPS-53 (KpLE1) prophage; uncharacterized protein  
132 0.005915 0.1577 b3356 yhfA -11.83 0.112173 273 -- 293 39 -- 71 OsmC family protein  
133 0.006126 0.1605 b0387 yaiI -9.01 0.350598 46 -- 81 33 -- 74 UPF0178 family protein  
134 0.006141 0.1605 b3413 gntX -10.72 0.183370 226 -- 267 37 -- 75 DNA catabolic protein  
135 0.006184 0.1605 b0637 rsfS -13.92 0.038847 179 -- 195 40 -- 56 ribosomal silencing factor  
136 0.006258 0.1605 b0219 yafV -11.82 0.112632 212 -- 233 61 -- 78 putative NAD(P)-binding C-N hydrolase family amidase  
137 0.006282 0.1605 b0123 cueO -13.57 0.047118 144 -- 176 48 -- 78 multicopper oxidase (laccase)  
138 0.006392 0.1605 b0345 lacI -7.62 0.533808 7 -- 17 61 -- 71 lactose-inducible lac operon transcriptional repressor  
139 0.006425 0.1605 b0924 mukB -11.72 0.118276 203 -- 227 45 -- 75 chromosome condensin MukBEF ATPase and DNA-binding subunit  
140 0.006445 0.1605 b0325 yahK -13.93 0.038719 67 -- 79 43 -- 55 broad specificity NADPH-dependent aldehyde reductase Zn-containing  
141 0.006483 0.1605 b2474 tmcA -12.94 0.065378 86 -- 105 35 -- 54 elongator methionine tRNA (ac4C34) acetyltransferase  
142 0.006549 0.1605 b3902 rhaD -9.93 0.251242 192 -- 218 44 -- 69 rhamnulose-1-phosphate aldolase  
143 0.006558 0.1605 b0161 degP -10.78 0.178564 159 -- 170 58 -- 69 serine endoprotease (protease Do) membrane-associated  
144 0.006569 0.1605 b2900 yqfB -12.46 0.083290 200 -- 238 34 -- 70 UPF0267 family protein  
145 0.006641 0.1605 b3316 rpsS -10.41 0.208024 125 -- 141 61 -- 77 30S ribosomal subunit protein S19  
146 0.006661 0.1605 b4479 dgoR -11.67 0.120911 94 -- 106 61 -- 74 D-galactonate catabolism operon transcriptional repressor  
147 0.006785 0.1624 b1920 fliY -15.06 0.020217 159 -- 198 40 -- 75 cystine transporter subunit  
148 0.006951 0.1638 b3995 rsd -9.56 0.289012 16 -- 28 58 -- 70 stationary phase protein binds sigma 70 RNA polymerase subunit  
149 0.006962 0.1638 b0935 ssuD -8.45 0.421381 102 -- 123 48 -- 71 alkanesulfonate monooxygenase FMNH(2)-dependent  
150 0.006982 0.1638 b3581 sgbH -9.48 0.297019 138 -- 176 34 -- 74 3-keto-L-gulonate 6-phosphate decarboxylase  
151 0.007209 0.1668 b0968 yccX -9.35 0.311742 266 -- 274 62 -- 70 weak acylphosphatase  
152 0.007399 0.1668 b0591 entS -13.87 0.039944 258 -- 287 45 -- 70 enterobactin exporter iron-regulated  
153 0.007486 0.1668 b1732 katE -14.34 0.030774 245 -- 275 42 -- 74 catalase HPII heme d-containing  
154 0.007512 0.1668 b2180 yejF -18.70 0.001576 262 -- 293 44 -- 72 microcin C ABC transporter ATPase  
155 0.007577 0.1668 b4364 yjjP -9.15 0.334468 166 -- 178 62 -- 74 DUF1212 family inner membrane protein  
156 0.007591 0.1668 b1044 ymdA -16.39 0.008687 226 -- 252 46 -- 73 uncharacterized protein  
157 0.007641 0.1668 b3154 yhbP -10.32 0.216043 188 -- 213 45 -- 78 UPF0306 family protein  
158 0.007677 0.1668 b1267 yciO -9.92 0.252655 228 -- 242 61 -- 75 putative RNA binding protein  
159 0.007688 0.1668 b0454 ybaZ -17.74 0.003345 226 -- 245 34 -- 52 excision repair protein alkyltransferase-like protein ATL  
160 0.007693 0.1668 b1671 ydhX -11.21 0.148807 210 -- 235 39 -- 74 putative 4Fe-4S ferridoxin-type protein; FNR Nar NarP-regulated protein; putative subunit of YdhYVWXUT oxidoreductase complex b4072
161 0.00773 0.1668 b0945 pyrD -11.84 0.111523 258 -- 300 33 -- 77 dihydro-orotate oxidase FMN-linked  
162 0.007731 0.1668 b4202 rpsR -9.58 0.287294 60 -- 77 62 -- 76 30S ribosomal subunit protein S18  
163 0.007762 0.1668 b0394 mak -14.23 0.032787 242 -- 265 40 -- 75 manno(fructo)kinase  
164 0.007775 0.1668 b2097 fbaB -9.67 0.277966 247 -- 265 48 -- 68 fructose-bisphosphate aldolase class I  
165 0.007934 0.1692 b3355 prkB -7.13 0.603515 287 -- 294 63 -- 70 putative phosphoribulokinase  
166 0.008074 0.1711 b2158 yeiH -9.26 0.321503 233 -- 257 41 -- 72 UPF0324 family inner membrane protein  
167 0.008121 0.1711 b2603 yfiR -9.52 0.293133 262 -- 278 35 -- 51 putative periplasmic inhibitor of YfiN activity  
168 0.008282 0.1723 b3822 recQ -12.50 0.081546 124 -- 155 43 -- 77 ATP-dependent DNA helicase  
169 0.008352 0.1723 b1222 narX -15.18 0.018797 58 -- 74 61 -- 75 sensory histidine kinase in two-component regulatory system with NarL  
170 0.008354 0.1723 b3294 rplQ -12.86 0.068031 178 -- 204 31 -- 54 50S ribosomal subunit protein L17  
171 0.008374 0.1723 b4485 ytfR -15.31 0.017344 177 -- 203 32 -- 71 putative sugar ABC transporter ATPase  
172 0.008479 0.1735 b4395 ytjC -10.99 0.163500 244 -- 268 34 -- 71 phosphatase  
173 0.008582 0.1745 b0060 polB -11.19 0.150164 8 -- 23 39 -- 51 DNA polymerase II  
174 0.008627 0.1745 b1926 fliT -7.57 0.540698 180 -- 211 31 -- 53 putative flagellar synthesis and assembly chaperone  
175 0.008768 0.1747 b0658 ybeX -12.37 0.086971 210 -- 256 35 -- 75 putative ion transport  
176 0.008803 0.1747 b1242 ychE -11.39 0.137124 41 -- 64 45 -- 75 UPF0056 family inner membrane protein  
177 0.008834 0.1747 b0932 pepN -9.31 0.316043 123 -- 145 58 -- 78 aminopeptidase N  
178 0.008884 0.1747 b0051 rsmA -9.94 0.250586 2 -- 32 30 -- 58 16S rRNA m(6)A1518 m(6)A1519 dimethyltransferase SAM-dependent  
179 0.009001 0.1747 b2725 hycA -11.58 0.125812 239 -- 264 43 -- 70 regulator of the transcriptional regulator FhlA  
180 0.009034 0.1747 b3146 rsmI -12.76 0.071583 191 -- 238 34 -- 76 16S rRNA C1402 2'-O-ribose methyltransferase SAM-dependent  
181 0.009071 0.1747 b3962 sthA -14.30 0.031527 83 -- 114 34 -- 76 pyridine nucleotide transhydrogenase soluble  
182 0.009082 0.1747 b3998 nfi -11.38 0.137700 53 -- 76 45 -- 75 endonuclease V; deoxyinosine 3' endonuclease  
183 0.009087 0.1747 b3965 trmA -11.75 0.116675 18 -- 52 35 -- 74 tRNA m(5)U54 methyltransferase SAM-dependent; tmRNA m(5)U341 methyltransferase  
184 0.00937 0.1776 b2467 nudK -13.30 0.054361 69 -- 94 38 -- 78 GDP-mannose pyrophosphatase  
185 0.009421 0.1776 b3094 exuR -10.10 0.235203 51 -- 95 35 -- 75 hexuronate regulon transcriptional repressor; autorepressor  
186 0.009502 0.1776 b1631 rsxG -12.74 0.072174 210 -- 253 41 -- 74 SoxR iron-sulfur cluster reduction factor component; putative membrane protein of electron transport complex  
187 0.009506 0.1776 b1243 oppA -10.52 0.199375 11 -- 17 40 -- 46 oligopeptide ABC transporter periplasmic binding protein  
188 0.009562 0.1776 b0147 ligT -10.24 0.223023 2 -- 33 35 -- 66 2'-5' RNA ligase  
189 0.009605 0.1776 b0927 ycbL -15.21 0.018444 14 -- 51 33 -- 78 putative metal-binding enzyme  
190 0.009703 0.1776 b4125 dcuS -9.98 0.246838 251 -- 265 60 -- 75 sensory histidine kinase in two-component regulatory system with DcuR regulator of anaerobic fumarate respiration  
191 0.009733 0.1776 b0190 yaeQ -9.83 0.261410 113 -- 128 45 -- 75 PDDEXK superfamily protein  
192 0.00979 0.1776 b3879 yihR -14.50 0.028125 239 -- 282 38 -- 72 putative sulphoquinovose mutarotase  
193 0.0098 0.1776 b0757 galK -12.45 0.083592 134 -- 176 33 -- 76 galactokinase  
194 0.009812 0.1776 b2687 luxS -7.90 0.495572 99 -- 106 42 -- 49 S-ribosylhomocysteine lyase  
195 0.009901 0.1776 b1098 tmk -15.44 0.015998 201 -- 230 41 -- 71 thymidylate kinase  
196 0.01003 0.1776 b0344 lacZ -8.86 0.369200 215 -- 237 48 -- 76 beta-D-galactosidase  
197 0.01006 0.1776 b0069 sgrR -8.41 0.425671 7 -- 22 58 -- 74 transcriptional DNA-binding transcriptional activator of sgrS sRNA  
198 0.01016 0.1776 b1764 selD -10.66 0.187945 118 -- 146 45 -- 71 selenophosphate synthase  
199 0.01026 0.1776 b2324 mnmC -11.15 0.152427 29 -- 45 45 -- 74 fused 5-methylaminomethyl-2-thiouridine-forming enzyme methyltransferase and FAD-dependent demodification enzyme  
200 0.01028 0.1776 b2803 fucK -15.72 0.013449 16 -- 30 62 -- 76 L-fuculokinase  

Details of Selected Interaction Download Interaction Details 

mRNA

sRNA


		

		

		

		
		

			

				
				

					
					
				

				
				

					
					
				

				
				

					
					
				

				
				

					
					
				

				
			

			

				
				

					
					
				

				
				

					
					
				

				
				

					
					
				

				
				

					
					
				

				
			

		
 
		
		

		
		

		
		
		
		
Evolutionary conservation of mRNA targets
			(alignment generated with
			Jalview)

		
		
		
Evolutionary conservation of sRNA
			(alignment generated with
			Jalview)

		
		
		

		
	

	
	
	

	
	
	




			 
	





	
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Results are computed with CopraRNA version 2.1.2



		 
	

			





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