| 61 |
0.002486 |
0.1417 |
b1487 |
ddpA |
-13.46 |
0.049908 |
168 -- 192 |
43 -- 71 |
D D-dipeptide ABC transporter periplasmic binding protein |
|
_____________167___________________________193\n_____________|_____________________________|\n5'-UCA...CCCUG________________CAG____A_____AAACU...UGA-3'\n______________GCACACAGCA___CGU____UUA_UCAGG\n______________:|||||||||___|||____|:|_|||||\n______________UGUGUGUCGU___GCA____AGU_AGUCC\n3'-UUU...UCUGA__________UAA___ACAA___G_____CCUAA...GCA-5'\n_____________|_____________________________|\n_____________72____________________________42\n |
171 -- 177 |
62 -- 68 |
-25.043 kcal/mol |
7.26137 kcal/mol |
4.32409 kcal/mol |
167 193@LB@ | |@LB@5'-UCA...CCCUG CAG A AAACU...UGA-3'@LB@ GCACACAGCA CGU UUA UCAGG@LB@ :||||||||| ||| |:| |||||@LB@ UGUGUGUCGU GCA AGU AGUCC@LB@3'-UUU...UCUGA UAA ACAA G CCUAA...GCA-5'@LB@ | |@LB@ 72 42@LB@@LB@@LB@Energy -13.46 kcal/mol@LB@Hybridization Energy -25.043 kcal/mol@LB@Unfolding Energy - mRNA 7.26137 kcal/mol@LB@Unfolding Energy - sRNA 4.32409 kcal/mol@LB@@LB@Position - mRNA 168 -- 192@LB@Position - sRNA 43 -- 71@LB@Position Seed - mRNA 171 -- 177@LB@Position Seed - sRNA 62 -- 68@LB@ |
| 62 |
0.002558 |
0.1417 |
b3579 |
yiaO |
-11.31 |
0.142375 |
245 -- 258 |
62 -- 75 |
2 3-diketo-L-gulonate-binding periplasmic protein |
|
_____________244____________259\n_____________|______________|\n5'-ACU...GGCCU________U_____CAUCU...AAA-3'\n______________GGCUGCAU_CAGCA\n______________|:||:||:_|||||\n______________CUGAUGUG_GUCGU\n3'-UUU...CGUUU________U_____UAAGC...GCA-5'\n_____________|______________|\n_____________76_____________61\n |
246 -- 252 |
68 -- 74 |
-19.3904 kcal/mol |
4.83304 kcal/mol |
3.25167 kcal/mol |
244 259@LB@ | |@LB@5'-ACU...GGCCU U CAUCU...AAA-3'@LB@ GGCUGCAU CAGCA@LB@ |:||:||: |||||@LB@ CUGAUGUG GUCGU@LB@3'-UUU...CGUUU U UAAGC...GCA-5'@LB@ | |@LB@ 76 61@LB@@LB@@LB@Energy -11.31 kcal/mol@LB@Hybridization Energy -19.3904 kcal/mol@LB@Unfolding Energy - mRNA 4.83304 kcal/mol@LB@Unfolding Energy - sRNA 3.25167 kcal/mol@LB@@LB@Position - mRNA 245 -- 258@LB@Position - sRNA 62 -- 75@LB@Position Seed - mRNA 246 -- 252@LB@Position Seed - sRNA 68 -- 74@LB@ |
| 63 |
0.002639 |
0.1417 |
b2751 |
cysN |
-11.35 |
0.139541 |
181 -- 198 |
34 -- 49 |
sulfate adenylyltransferase subunit 1 |
|
_____________180________________199\n_____________|__________________|\n5'-AGU...AAAAA__G_______U_______AGAUG...GUG-3'\n______________AC_UCAGGGG_AUUUUUA\n______________||_|||||||_||||::|\n______________UG_AGUCCCC_UAAAGGU\n3'-UUU...CAAAG__________________ACGAA...GCA-5'\n_____________|__________________|\n_____________50_________________33\n |
184 -- 190 |
41 -- 47 |
-17.8149 kcal/mol |
4.64155 kcal/mol |
1.82276 kcal/mol |
180 199@LB@ | |@LB@5'-AGU...AAAAA G U AGAUG...GUG-3'@LB@ AC UCAGGGG AUUUUUA@LB@ || ||||||| ||||::|@LB@ UG AGUCCCC UAAAGGU@LB@3'-UUU...CAAAG ACGAA...GCA-5'@LB@ | |@LB@ 50 33@LB@@LB@@LB@Energy -11.35 kcal/mol@LB@Hybridization Energy -17.8149 kcal/mol@LB@Unfolding Energy - mRNA 4.64155 kcal/mol@LB@Unfolding Energy - sRNA 1.82276 kcal/mol@LB@@LB@Position - mRNA 181 -- 198@LB@Position - sRNA 34 -- 49@LB@Position Seed - mRNA 184 -- 190@LB@Position Seed - sRNA 41 -- 47@LB@ |
| 64 |
0.002655 |
0.1417 |
b0876 |
ybjD |
-10.33 |
0.215429 |
171 -- 200 |
39 -- 78 |
putative OLD family ATP-dependent endonuclease; DUF2813 family protein |
|
_____________170________________________________________201\n_____________|__________________________________________|\n5'-CGU...GCGUA______AAGU_____________________UGG________AUGAU...GGG-3'\n______________AAGGAU____CACAUA___________UUUC____AGGGGAU\n______________||:||:____||||:|___________||||____|||||||\n______________UUUCUG____GUGUGU___________AAAG____UCCCCUA\n3'-UUU...ACCCG______AU________CGUUAAGCAAC____UGAG_______AAGGU...GCA-5'\n_____________|__________________________________________|\n_____________79_________________________________________38\n |
194 -- 200 |
39 -- 45 |
-20.0974 kcal/mol |
4.99339 kcal/mol |
4.77966 kcal/mol |
170 201@LB@ | |@LB@5'-CGU...GCGUA AAGU UGG AUGAU...GGG-3'@LB@ AAGGAU CACAUA UUUC AGGGGAU@LB@ ||:||: ||||:| |||| |||||||@LB@ UUUCUG GUGUGU AAAG UCCCCUA@LB@3'-UUU...ACCCG AU CGUUAAGCAAC UGAG AAGGU...GCA-5'@LB@ | |@LB@ 79 38@LB@@LB@@LB@Energy -10.33 kcal/mol@LB@Hybridization Energy -20.0974 kcal/mol@LB@Unfolding Energy - mRNA 4.99339 kcal/mol@LB@Unfolding Energy - sRNA 4.77966 kcal/mol@LB@@LB@Position - mRNA 171 -- 200@LB@Position - sRNA 39 -- 78@LB@Position Seed - mRNA 194 -- 200@LB@Position Seed - sRNA 39 -- 45@LB@ |
| 65 |
0.002677 |
0.1417 |
b0584 |
fepA |
-11.47 |
0.132508 |
209 -- 249 |
37 -- 78 |
ferrienterobactin outer membrane transporter |
|
_____________208___________________________________________250\n_____________|_____________________________________________|\n5'-GAA...AACAA___________U_CCU___C________G____A__U________AUGGG...ACG-3'\n______________GAAGAUU_CAU_C___GGC___UUGUUG__UCA_UC_GGGGAUUU\n______________:||||:|_||:_|___:||___|:||||__|||_||_||||||||\n______________UUUCUGA_GUG_G___UCG___AGCAAC__AGU_AG_CCCCUAAA\n3'-UUU...ACCCG_______U___U_______UUA______AA___G__U________GGUAC...GCA-5'\n_____________|_____________________________________________|\n_____________79____________________________________________36\n |
243 -- 249 |
37 -- 43 |
-30.6633 kcal/mol |
14.4176 kcal/mol |
4.77973 kcal/mol |
208 250@LB@ | |@LB@5'-GAA...AACAA U CCU C G A U AUGGG...ACG-3'@LB@ GAAGAUU CAU C GGC UUGUUG UCA UC GGGGAUUU@LB@ :||||:| ||: | :|| |:|||| ||| || ||||||||@LB@ UUUCUGA GUG G UCG AGCAAC AGU AG CCCCUAAA@LB@3'-UUU...ACCCG U U UUA AA G U GGUAC...GCA-5'@LB@ | |@LB@ 79 36@LB@@LB@@LB@Energy -11.47 kcal/mol@LB@Hybridization Energy -30.6633 kcal/mol@LB@Unfolding Energy - mRNA 14.4176 kcal/mol@LB@Unfolding Energy - sRNA 4.77973 kcal/mol@LB@@LB@Position - mRNA 209 -- 249@LB@Position - sRNA 37 -- 78@LB@Position Seed - mRNA 243 -- 249@LB@Position Seed - sRNA 37 -- 43@LB@ |
| 66 |
0.002697 |
0.1417 |
b1306 |
pspC |
-11.06 |
0.158336 |
44 -- 64 |
55 -- 75 |
psp operon transcription co-activator |
|
_____________43_____________________65\n_____________|______________________|\n5'-CCG...GUUAU_______U______________CUGGU...CGG-3'\n______________GGCUGCA_UACAGCAAU_CGUU\n______________|:||:||_:||||||||_||||\n______________CUGAUGU_GUGUCGUUA_GCAA\n3'-UUU...CGUUU_________________A____CAAAG...GCA-5'\n_____________|______________________|\n_____________76_____________________54\n |
54 -- 60 |
60 -- 66 |
-24.9269 kcal/mol |
10.2549 kcal/mol |
3.6092 kcal/mol |
43 65@LB@ | |@LB@5'-CCG...GUUAU U CUGGU...CGG-3'@LB@ GGCUGCA UACAGCAAU CGUU@LB@ |:||:|| :|||||||| ||||@LB@ CUGAUGU GUGUCGUUA GCAA@LB@3'-UUU...CGUUU A CAAAG...GCA-5'@LB@ | |@LB@ 76 54@LB@@LB@@LB@Energy -11.06 kcal/mol@LB@Hybridization Energy -24.9269 kcal/mol@LB@Unfolding Energy - mRNA 10.2549 kcal/mol@LB@Unfolding Energy - sRNA 3.6092 kcal/mol@LB@@LB@Position - mRNA 44 -- 64@LB@Position - sRNA 55 -- 75@LB@Position Seed - mRNA 54 -- 60@LB@Position Seed - sRNA 60 -- 66@LB@ |
| 67 |
0.002719 |
0.1417 |
b3454 |
livF |
-11.67 |
0.120634 |
106 -- 122 |
40 -- 58 |
branched-chain amino acid ABC transporter ATPase |
|
_____________105_________________123\n_____________|___________________|\n5'-AGA...AUUUA___GG_____A________CGCCG...UUG-3'\n______________CGU____UCA_UCAGGGGA\n______________|||____|||_||||||||\n______________GCA____AGU_AGUCCCCU\n3'-UUU...GUUAA___ACAA___G________AAAGG...GCA-5'\n_____________|___________________|\n_____________59__________________39\n |
116 -- 122 |
40 -- 46 |
-19.8465 kcal/mol |
5.75116 kcal/mol |
2.42241 kcal/mol |
105 123@LB@ | |@LB@5'-AGA...AUUUA GG A CGCCG...UUG-3'@LB@ CGU UCA UCAGGGGA@LB@ ||| ||| ||||||||@LB@ GCA AGU AGUCCCCU@LB@3'-UUU...GUUAA ACAA G AAAGG...GCA-5'@LB@ | |@LB@ 59 39@LB@@LB@@LB@Energy -11.67 kcal/mol@LB@Hybridization Energy -19.8465 kcal/mol@LB@Unfolding Energy - mRNA 5.75116 kcal/mol@LB@Unfolding Energy - sRNA 2.42241 kcal/mol@LB@@LB@Position - mRNA 106 -- 122@LB@Position - sRNA 40 -- 58@LB@Position Seed - mRNA 116 -- 122@LB@Position Seed - sRNA 40 -- 46@LB@ |
| 68 |
0.002787 |
0.1417 |
b3001 |
gpr |
-15.31 |
0.017381 |
36 -- 59 |
44 -- 69 |
L-glyceraldehyde 3-phosphate reductase |
|
_____________35__________________________60\n_____________|___________________________|\n5'-UCC...GUUAA________________CAC________UUGGU...GGC-3'\n______________ACGCGGCA__UCGUUG___UC_CUCAG\n______________||:|:|||__||||||___||_|||||\n______________UGUGUCGU__AGCAAC___AG_GAGUC\n3'-UUU...UGAUG________UA______AA___U_____CCCUA...GCA-5'\n_____________|___________________________|\n_____________70__________________________43\n |
37 -- 43 |
62 -- 68 |
-25.5933 kcal/mol |
6.1914 kcal/mol |
4.09554 kcal/mol |
35 60@LB@ | |@LB@5'-UCC...GUUAA CAC UUGGU...GGC-3'@LB@ ACGCGGCA UCGUUG UC CUCAG@LB@ ||:|:||| |||||| || |||||@LB@ UGUGUCGU AGCAAC AG GAGUC@LB@3'-UUU...UGAUG UA AA U CCCUA...GCA-5'@LB@ | |@LB@ 70 43@LB@@LB@@LB@Energy -15.31 kcal/mol@LB@Hybridization Energy -25.5933 kcal/mol@LB@Unfolding Energy - mRNA 6.1914 kcal/mol@LB@Unfolding Energy - sRNA 4.09554 kcal/mol@LB@@LB@Position - mRNA 36 -- 59@LB@Position - sRNA 44 -- 69@LB@Position Seed - mRNA 37 -- 43@LB@Position Seed - sRNA 62 -- 68@LB@ |
| 69 |
0.002809 |
0.1417 |
b1925 |
fliS |
-16.42 |
0.008504 |
133 -- 153 |
57 -- 74 |
flagellar protein potentiates polymerization |
|
_____________132___________________154\n_____________|_____________________|\n5'-UUA...CAGCA_____UUA_____________AAAAC...AUG-3'\n______________GCUAC___ACGCAGCAGUUCG\n______________:||||___||:|||||:||||\n______________UGAUG___UGUGUCGUUAAGC\n3'-UUU...GUUUC_____________________AACAA...GCA-5'\n_____________|_____________________|\n_____________75____________________56\n |
147 -- 153 |
57 -- 63 |
-25.0139 kcal/mol |
5.019 kcal/mol |
3.57148 kcal/mol |
132 154@LB@ | |@LB@5'-UUA...CAGCA UUA AAAAC...AUG-3'@LB@ GCUAC ACGCAGCAGUUCG@LB@ :|||| ||:|||||:||||@LB@ UGAUG UGUGUCGUUAAGC@LB@3'-UUU...GUUUC AACAA...GCA-5'@LB@ | |@LB@ 75 56@LB@@LB@@LB@Energy -16.42 kcal/mol@LB@Hybridization Energy -25.0139 kcal/mol@LB@Unfolding Energy - mRNA 5.019 kcal/mol@LB@Unfolding Energy - sRNA 3.57148 kcal/mol@LB@@LB@Position - mRNA 133 -- 153@LB@Position - sRNA 57 -- 74@LB@Position Seed - mRNA 147 -- 153@LB@Position Seed - sRNA 57 -- 63@LB@ |
| 70 |
0.002881 |
0.1417 |
b4144 |
yjeI |
-14.17 |
0.033933 |
177 -- 235 |
31 -- 99 |
DUF4156 family lipoprotein |
|
_____________176______________________________________________________________________236\n_____________|________________________________________________________________________|\n5'-GCA...CGUCC_________AUU________G__UA______________AA_______________CA______G__G____CGCGC...GCA-3'\n______________AGCUCAUUG______AUGGG_AA__AC_AUGCAC_GUAA__________UACUUAG__GGGAUU_UC_GUGC\n______________|||:|||:|______|||||_||__||_|::|||_|:||__________:|||:||__||||||_||_:|||\n______________UCGGGUAGC______UACCC_UU__UG_UGUGUG_CGUU__________GUGAGUC__CCCUAA_AG_UACG\n_____3'-UUUUUU_________ACCCUC_____G__UC__A______U____AAGCAACAAA__________________G____AAUAU...GCA-5'\n_____________|________________________________________________________________________|\n_____________100______________________________________________________________________30\n |
213 -- 219 |
44 -- 50 |
-46.9384 kcal/mol |
12.7048 kcal/mol |
20.0691 kcal/mol |
176 236@LB@ | |@LB@5'-GCA...CGUCC AUU G UA AA CA G G CGCGC...GCA-3'@LB@ AGCUCAUUG AUGGG AA AC AUGCAC GUAA UACUUAG GGGAUU UC GUGC@LB@ |||:|||:| ||||| || || |::||| |:|| :|||:|| |||||| || :|||@LB@ UCGGGUAGC UACCC UU UG UGUGUG CGUU GUGAGUC CCCUAA AG UACG@LB@ 3'-UUUUUU ACCCUC G UC A U AAGCAACAAA G AAUAU...GCA-5'@LB@ | |@LB@ 100 30@LB@@LB@@LB@Energy -14.17 kcal/mol@LB@Hybridization Energy -46.9384 kcal/mol@LB@Unfolding Energy - mRNA 12.7048 kcal/mol@LB@Unfolding Energy - sRNA 20.0691 kcal/mol@LB@@LB@Position - mRNA 177 -- 235@LB@Position - sRNA 31 -- 99@LB@Position Seed - mRNA 213 -- 219@LB@Position Seed - sRNA 44 -- 50@LB@ |
