| 31 |
0.0004964 |
0.05552 |
b2325 |
yfcL |
-14.31 |
0.031288 |
272 -- 297 |
32 -- 57 |
uncharacterized protein |
|
_____________271__________________________298\n_____________|____________________________|\n5'-AAC...GAUGA______________U___U____G____GCC-3'\n______________GUUGUUU_GC_CAG_GGG_AUUU_CGUG\n______________|||||||_:|_|||_|||_||||_|:||\n______________CAACAAA_UG_GUC_CCC_UAAA_GUAC\n3'-UUU...UUAAG_______G__A____________G____GAAUA...GCA-5'\n_____________|____________________________|\n_____________58___________________________31\n |
272 -- 278 |
51 -- 57 |
-23.7407 kcal/mol |
4.96676 kcal/mol |
4.4642 kcal/mol |
271 298@LB@ | |@LB@5'-AAC...GAUGA U U G GCC-3'@LB@ GUUGUUU GC CAG GGG AUUU CGUG@LB@ ||||||| :| ||| ||| |||| |:||@LB@ CAACAAA UG GUC CCC UAAA GUAC@LB@3'-UUU...UUAAG G A G GAAUA...GCA-5'@LB@ | |@LB@ 58 31@LB@@LB@@LB@Energy -14.31 kcal/mol@LB@Hybridization Energy -23.7407 kcal/mol@LB@Unfolding Energy - mRNA 4.96676 kcal/mol@LB@Unfolding Energy - sRNA 4.4642 kcal/mol@LB@@LB@Position - mRNA 272 -- 297@LB@Position - sRNA 32 -- 57@LB@Position Seed - mRNA 272 -- 278@LB@Position Seed - sRNA 51 -- 57@LB@ |
| 32 |
0.0005139 |
0.05552 |
b4070 |
nrfA |
-17.83 |
0.003136 |
66 -- 107 |
41 -- 78 |
nitrite reductase formate-dependent cytochrome |
|
_____________65_________________________________________108\n_____________|__________________________________________|\n5'-UGU...UGAUU______A___UU_______UG___AU_____A___A______CGAGC...CAA-3'\n______________AAAGAC_ACA__CACAGUG__GUU__UUGUU_CAC_UAGGGG\n______________||||||_|||__|||||::__:||__|||||_|||_:|||||\n______________UUUCUG_UGU__GUGUCGU__UAA__AACAA_GUG_GUCCCC\n3'-UUU...ACCCG______A_________________GC_____A___A______UAAAG...GCA-5'\n_____________|__________________________________________|\n_____________79_________________________________________40\n |
78 -- 84 |
62 -- 68 |
-32.7887 kcal/mol |
10.1881 kcal/mol |
4.77302 kcal/mol |
65 108@LB@ | |@LB@5'-UGU...UGAUU A UU UG AU A A CGAGC...CAA-3'@LB@ AAAGAC ACA CACAGUG GUU UUGUU CAC UAGGGG@LB@ |||||| ||| |||||:: :|| ||||| ||| :|||||@LB@ UUUCUG UGU GUGUCGU UAA AACAA GUG GUCCCC@LB@3'-UUU...ACCCG A GC A A UAAAG...GCA-5'@LB@ | |@LB@ 79 40@LB@@LB@@LB@Energy -17.83 kcal/mol@LB@Hybridization Energy -32.7887 kcal/mol@LB@Unfolding Energy - mRNA 10.1881 kcal/mol@LB@Unfolding Energy - sRNA 4.77302 kcal/mol@LB@@LB@Position - mRNA 66 -- 107@LB@Position - sRNA 41 -- 78@LB@Position Seed - mRNA 78 -- 84@LB@Position Seed - sRNA 62 -- 68@LB@ |
| 33 |
0.0005309 |
0.05552 |
b2905 |
gcvT |
-15.66 |
0.013961 |
227 -- 265 |
34 -- 74 |
aminomethyltransferase tetrahydrofolate-dependent subunit (T protein) of glycine cleavage complex |
|
_____________226___________________________________________266\n_____________|_____________________________________________|\n5'-CUG...UACGA__A_______________CG__________CAU__U_________CGGCU...AAA-3'\n______________AC_ACACAC_GC__UUUG__G___CGCUCG___GG_GGAUUUCCA\n______________||_||||||_||__||:|__|___|:|||:___||_|||||||||\n______________UG_UGUGUG_CG__AAGC__C___GUGAGU___CC_CCUAAAGGU\n3'-UUU...GUUUC__A______U__UU____AA_AAA_____________________ACGAA...GCA-5'\n_____________|_____________________________________________|\n_____________75____________________________________________33\n |
259 -- 265 |
34 -- 40 |
-32.8395 kcal/mol |
12.3643 kcal/mol |
4.81599 kcal/mol |
226 266@LB@ | |@LB@5'-CUG...UACGA A CG CAU U CGGCU...AAA-3'@LB@ AC ACACAC GC UUUG G CGCUCG GG GGAUUUCCA@LB@ || |||||| || ||:| | |:|||: || |||||||||@LB@ UG UGUGUG CG AAGC C GUGAGU CC CCUAAAGGU@LB@3'-UUU...GUUUC A U UU AA AAA ACGAA...GCA-5'@LB@ | |@LB@ 75 33@LB@@LB@@LB@Energy -15.66 kcal/mol@LB@Hybridization Energy -32.8395 kcal/mol@LB@Unfolding Energy - mRNA 12.3643 kcal/mol@LB@Unfolding Energy - sRNA 4.81599 kcal/mol@LB@@LB@Position - mRNA 227 -- 265@LB@Position - sRNA 34 -- 74@LB@Position Seed - mRNA 259 -- 265@LB@Position Seed - sRNA 34 -- 40@LB@ |
| 34 |
0.0005364 |
0.05552 |
b4244 |
pyrI |
-10.55 |
0.196904 |
198 -- 215 |
60 -- 77 |
aspartate carbamoyltransferase regulatory subunit |
|
_____________197________________216\n_____________|__________________|\n5'-UUC...AAAUA_____G_______A____AAAUU...UCA-3'\n______________GAGAU_ACACACG_UAAU\n______________:|||:_||||||:_:|||\n______________UUCUG_UGUGUGU_GUUA\n3'-UUU...CCCGU_____A_______C____AGCAA...GCA-5'\n_____________|__________________|\n_____________78_________________59\n |
204 -- 210 |
65 -- 71 |
-15.1619 kcal/mol |
1.32522 kcal/mol |
3.29036 kcal/mol |
197 216@LB@ | |@LB@5'-UUC...AAAUA G A AAAUU...UCA-3'@LB@ GAGAU ACACACG UAAU@LB@ :|||: ||||||: :|||@LB@ UUCUG UGUGUGU GUUA@LB@3'-UUU...CCCGU A C AGCAA...GCA-5'@LB@ | |@LB@ 78 59@LB@@LB@@LB@Energy -10.55 kcal/mol@LB@Hybridization Energy -15.1619 kcal/mol@LB@Unfolding Energy - mRNA 1.32522 kcal/mol@LB@Unfolding Energy - sRNA 3.29036 kcal/mol@LB@@LB@Position - mRNA 198 -- 215@LB@Position - sRNA 60 -- 77@LB@Position Seed - mRNA 204 -- 210@LB@Position Seed - sRNA 65 -- 71@LB@ |
| 35 |
0.0005607 |
0.05638 |
b1434 |
ydcN |
-11.45 |
0.133710 |
242 -- 253 |
62 -- 74 |
putative DNA-binding transcriptional regulator |
b1508 b1299 |
_____________241___________254\n_____________|_____________|\n5'-CGG...AAACA_____________GCGCG...CUA-3'\n______________ACUACGC_CAGCA\n______________|||||:|_|||||\n______________UGAUGUG_GUCGU\n3'-UUU...GUUUC_______U_____UAAGC...GCA-5'\n_____________|_____________|\n_____________75____________61\n |
242 -- 248 |
68 -- 74 |
-17.054 kcal/mol |
2.36402 kcal/mol |
3.24359 kcal/mol |
241 254@LB@ | |@LB@5'-CGG...AAACA GCGCG...CUA-3'@LB@ ACUACGC CAGCA@LB@ |||||:| |||||@LB@ UGAUGUG GUCGU@LB@3'-UUU...GUUUC U UAAGC...GCA-5'@LB@ | |@LB@ 75 61@LB@@LB@@LB@Energy -11.45 kcal/mol@LB@Hybridization Energy -17.054 kcal/mol@LB@Unfolding Energy - mRNA 2.36402 kcal/mol@LB@Unfolding Energy - sRNA 3.24359 kcal/mol@LB@@LB@Position - mRNA 242 -- 253@LB@Position - sRNA 62 -- 74@LB@Position Seed - mRNA 242 -- 248@LB@Position Seed - sRNA 68 -- 74@LB@ |
| 36 |
0.0006028 |
0.05893 |
b2398 |
yfeC |
-12.67 |
0.075056 |
159 -- 178 |
42 -- 76 |
DUF1323 family putative DNA-binding protein |
b2399 |
_____________158_________________________________179\n_____________|___________________________________|\n5'-AUA...CUAAU____C______________________________AAUUG...GCG-3'\n______________AGAC__CACAUA______________CAUUCAGGG\n______________||||__||||:|______________||:||||||\n______________UCUG__GUGUGU______________GUGAGUCCC\n3'-UUU...CCGUU____AU______CGUUAAGCAACAAA_________CUAAA...GCA-5'\n_____________|___________________________________|\n_____________77__________________________________41\n |
172 -- 178 |
42 -- 48 |
-21.7854 kcal/mol |
4.35612 kcal/mol |
4.76453 kcal/mol |
158 179@LB@ | |@LB@5'-AUA...CUAAU C AAUUG...GCG-3'@LB@ AGAC CACAUA CAUUCAGGG@LB@ |||| ||||:| ||:||||||@LB@ UCUG GUGUGU GUGAGUCCC@LB@3'-UUU...CCGUU AU CGUUAAGCAACAAA CUAAA...GCA-5'@LB@ | |@LB@ 77 41@LB@@LB@@LB@Energy -12.67 kcal/mol@LB@Hybridization Energy -21.7854 kcal/mol@LB@Unfolding Energy - mRNA 4.35612 kcal/mol@LB@Unfolding Energy - sRNA 4.76453 kcal/mol@LB@@LB@Position - mRNA 159 -- 178@LB@Position - sRNA 42 -- 76@LB@Position Seed - mRNA 172 -- 178@LB@Position Seed - sRNA 42 -- 48@LB@ |
| 37 |
0.0006599 |
0.0618 |
b3399 |
yrfG |
-16.99 |
0.005777 |
176 -- 197 |
35 -- 56 |
GMP/IMP nucleotidase |
|
_____________175____________________198\n_____________|______________________|\n5'-UAG...GCAAA___C_______U__A_______CUCAU...AGC-3'\n______________UUG_UUCACUC_GG_GAUUUCC\n______________|||_|||||||_||_|||||||\n______________AAC_AAGUGAG_CC_CUAAAGG\n3'-UUU...UAAGC___A_______U__C_______UACGA...GCA-5'\n_____________|______________________|\n_____________57_____________________34\n |
191 -- 197 |
35 -- 41 |
-24.095 kcal/mol |
5.08619 kcal/mol |
2.02101 kcal/mol |
175 198@LB@ | |@LB@5'-UAG...GCAAA C U A CUCAU...AGC-3'@LB@ UUG UUCACUC GG GAUUUCC@LB@ ||| ||||||| || |||||||@LB@ AAC AAGUGAG CC CUAAAGG@LB@3'-UUU...UAAGC A U C UACGA...GCA-5'@LB@ | |@LB@ 57 34@LB@@LB@@LB@Energy -16.99 kcal/mol@LB@Hybridization Energy -24.095 kcal/mol@LB@Unfolding Energy - mRNA 5.08619 kcal/mol@LB@Unfolding Energy - sRNA 2.02101 kcal/mol@LB@@LB@Position - mRNA 176 -- 197@LB@Position - sRNA 35 -- 56@LB@Position Seed - mRNA 191 -- 197@LB@Position Seed - sRNA 35 -- 41@LB@ |
| 38 |
0.0006674 |
0.0618 |
b2069 |
yegD |
-11.14 |
0.153468 |
57 -- 84 |
48 -- 76 |
Hsp70 chaperone family protein |
|
_____________56____________________________85\n_____________|_____________________________|\n5'-CAC...AGUUC___G_______C___UC__CUUA______CCGCU...UGC-3'\n______________AGG_UAUACAU_GCA__UC_____UUCAU\n______________||:_||:|||:_|||__||_____||||:\n______________UCU_AUGUGUG_CGU__AG_____AAGUG\n3'-UUU...CCGUU___G_______U___UA__CAACA_____AGUCC...GCA-5'\n_____________|_____________________________|\n_____________77____________________________47\n |
61 -- 67 |
66 -- 72 |
-18.1339 kcal/mol |
3.31217 kcal/mol |
3.68714 kcal/mol |
56 85@LB@ | |@LB@5'-CAC...AGUUC G C UC CUUA CCGCU...UGC-3'@LB@ AGG UAUACAU GCA UC UUCAU@LB@ ||: ||:|||: ||| || ||||:@LB@ UCU AUGUGUG CGU AG AAGUG@LB@3'-UUU...CCGUU G U UA CAACA AGUCC...GCA-5'@LB@ | |@LB@ 77 47@LB@@LB@@LB@Energy -11.14 kcal/mol@LB@Hybridization Energy -18.1339 kcal/mol@LB@Unfolding Energy - mRNA 3.31217 kcal/mol@LB@Unfolding Energy - sRNA 3.68714 kcal/mol@LB@@LB@Position - mRNA 57 -- 84@LB@Position - sRNA 48 -- 76@LB@Position Seed - mRNA 61 -- 67@LB@Position Seed - sRNA 66 -- 72@LB@ |
| 39 |
0.0006857 |
0.06187 |
b1305 |
pspB |
-16.08 |
0.010660 |
268 -- 296 |
48 -- 75 |
psp operon transcription co-activator |
|
_____________267____________________________297\n_____________|______________________________|\n5'-AUU...GUUAU_______U______________CUGG____AGUG-3'\n______________GGCUGCA_UACAGCAAU_CGUU____UCGC\n______________|:||:||_:||||||||_||||____||:|\n______________CUGAUGU_GUGUCGUUA_GCAA____AGUG\n3'-UUU...CGUUU_________________A____CAA_____AGUCC...GCA-5'\n_____________|______________________________|\n_____________76_____________________________47\n |
278 -- 284 |
60 -- 66 |
-29.5086 kcal/mol |
9.74074 kcal/mol |
3.68696 kcal/mol |
267 297@LB@ | |@LB@5'-AUU...GUUAU U CUGG AGUG-3'@LB@ GGCUGCA UACAGCAAU CGUU UCGC@LB@ |:||:|| :|||||||| |||| ||:|@LB@ CUGAUGU GUGUCGUUA GCAA AGUG@LB@3'-UUU...CGUUU A CAA AGUCC...GCA-5'@LB@ | |@LB@ 76 47@LB@@LB@@LB@Energy -16.08 kcal/mol@LB@Hybridization Energy -29.5086 kcal/mol@LB@Unfolding Energy - mRNA 9.74074 kcal/mol@LB@Unfolding Energy - sRNA 3.68696 kcal/mol@LB@@LB@Position - mRNA 268 -- 296@LB@Position - sRNA 48 -- 75@LB@Position Seed - mRNA 278 -- 284@LB@Position Seed - sRNA 60 -- 66@LB@ |
| 40 |
0.0008945 |
0.07693 |
b0525 |
ppiB |
-7.31 |
0.578113 |
284 -- 298 |
61 -- 76 |
peptidyl-prolyl cis-trans isomerase B (rotamase B) |
|
_____________283______________299\n_____________|________________|\n5'-UGU...UUCCU___________C____AG-3'\n______________GGACUAC_UGC_GCGA\n______________:||||||_::|_||:|\n______________UCUGAUG_GUG_CGUU\n3'-UUU...CCGUU_______U___U____AAGCA...GCA-5'\n_____________|________________|\n_____________77_______________60\n |
284 -- 290 |
70 -- 76 |
-14.2171 kcal/mol |
3.65067 kcal/mol |
3.25604 kcal/mol |
283 299@LB@ | |@LB@5'-UGU...UUCCU C AG-3'@LB@ GGACUAC UGC GCGA@LB@ :|||||| ::| ||:|@LB@ UCUGAUG GUG CGUU@LB@3'-UUU...CCGUU U U AAGCA...GCA-5'@LB@ | |@LB@ 77 60@LB@@LB@@LB@Energy -7.31 kcal/mol@LB@Hybridization Energy -14.2171 kcal/mol@LB@Unfolding Energy - mRNA 3.65067 kcal/mol@LB@Unfolding Energy - sRNA 3.25604 kcal/mol@LB@@LB@Position - mRNA 284 -- 298@LB@Position - sRNA 61 -- 76@LB@Position Seed - mRNA 284 -- 290@LB@Position Seed - sRNA 70 -- 76@LB@ |
