71 |
0.002886 |
0.1417 |
b2431 |
yfeX |
-11.26 |
0.145044 |
235 -- 277 |
40 -- 74 |
porphyrinogen oxidase cytoplasmic |
|
_____________234_________________________________________278\n_____________|___________________________________________|\n5'-AUU...AGAAC____C______________GAUCGAA__CAACGUGAA______AGUUG...CCA-3'\n______________AUUG_CGCGCGGCGAUUUG_______GC_________AGGGGA\n______________|:|:_|:|:|:||:|||:|_______:|_________||||||\n______________UGAU_GUGUGUCGUUAAGC_______UG_________UCCCCU\n3'-UUU...GUUUC___________________AACAAAG__AG_____________AAAGG...GCA-5'\n_____________|___________________________________________|\n_____________75__________________________________________39\n |
246 -- 252 |
58 -- 64 |
-30.0675 kcal/mol |
14.0273 kcal/mol |
4.77707 kcal/mol |
234 278@LB@ | |@LB@5'-AUU...AGAAC C GAUCGAA CAACGUGAA AGUUG...CCA-3'@LB@ AUUG CGCGCGGCGAUUUG GC AGGGGA@LB@ |:|: |:|:|:||:|||:| :| ||||||@LB@ UGAU GUGUGUCGUUAAGC UG UCCCCU@LB@3'-UUU...GUUUC AACAAAG AG AAAGG...GCA-5'@LB@ | |@LB@ 75 39@LB@@LB@@LB@Energy -11.26 kcal/mol@LB@Hybridization Energy -30.0675 kcal/mol@LB@Unfolding Energy - mRNA 14.0273 kcal/mol@LB@Unfolding Energy - sRNA 4.77707 kcal/mol@LB@@LB@Position - mRNA 235 -- 277@LB@Position - sRNA 40 -- 74@LB@Position Seed - mRNA 246 -- 252@LB@Position Seed - sRNA 58 -- 64@LB@ |
72 |
0.002899 |
0.1417 |
b3688 |
yidQ |
-12.98 |
0.064171 |
231 -- 261 |
39 -- 71 |
DUF1375 family outer membrane protein |
|
_____________230_______________________________262\n_____________|_________________________________|\n5'-AUG...UCAUG___________AAUGACA__________A____GCUCC...GAA-3'\n______________AUAUGCAGCGG_________UUACUCGG_GGAU\n______________|:|::||||::_________|:||||:|_||||\n______________UGUGUGUCGUU_________AGUGAGUC_CCUA\n3'-UUU...UCUGA___________AAGCAACAA________C____AAGGU...GCA-5'\n_____________|_________________________________|\n_____________72________________________________38\n |
250 -- 256 |
44 -- 50 |
-25.1937 kcal/mol |
7.46905 kcal/mol |
4.74947 kcal/mol |
230 262@LB@ | |@LB@5'-AUG...UCAUG AAUGACA A GCUCC...GAA-3'@LB@ AUAUGCAGCGG UUACUCGG GGAU@LB@ |:|::||||:: |:||||:| ||||@LB@ UGUGUGUCGUU AGUGAGUC CCUA@LB@3'-UUU...UCUGA AAGCAACAA C AAGGU...GCA-5'@LB@ | |@LB@ 72 38@LB@@LB@@LB@Energy -12.98 kcal/mol@LB@Hybridization Energy -25.1937 kcal/mol@LB@Unfolding Energy - mRNA 7.46905 kcal/mol@LB@Unfolding Energy - sRNA 4.74947 kcal/mol@LB@@LB@Position - mRNA 231 -- 261@LB@Position - sRNA 39 -- 71@LB@Position Seed - mRNA 250 -- 256@LB@Position Seed - sRNA 44 -- 50@LB@ |
73 |
0.00298 |
0.1437 |
b0474 |
adk |
-13.48 |
0.049381 |
180 -- 198 |
34 -- 50 |
adenylate kinase |
|
_____________179_________________199\n_____________|___________________|\n5'-ACC...CGACA_____UA____________CAAUG...AUA-3'\n______________CAUUU__AGGGGAUUUUCG\n______________||:|:__|||||||||:|:\n______________GUGAG__UCCCCUAAAGGU\n3'-UUU...ACAAA___________________ACGAA...GCA-5'\n_____________|___________________|\n_____________51__________________33\n |
191 -- 197 |
35 -- 41 |
-19.9961 kcal/mol |
4.64453 kcal/mol |
1.87382 kcal/mol |
179 199@LB@ | |@LB@5'-ACC...CGACA UA CAAUG...AUA-3'@LB@ CAUUU AGGGGAUUUUCG@LB@ ||:|: |||||||||:|:@LB@ GUGAG UCCCCUAAAGGU@LB@3'-UUU...ACAAA ACGAA...GCA-5'@LB@ | |@LB@ 51 33@LB@@LB@@LB@Energy -13.48 kcal/mol@LB@Hybridization Energy -19.9961 kcal/mol@LB@Unfolding Energy - mRNA 4.64453 kcal/mol@LB@Unfolding Energy - sRNA 1.87382 kcal/mol@LB@@LB@Position - mRNA 180 -- 198@LB@Position - sRNA 34 -- 50@LB@Position Seed - mRNA 191 -- 197@LB@Position Seed - sRNA 35 -- 41@LB@ |
74 |
0.003066 |
0.1452 |
b0467 |
priC |
-11.71 |
0.118543 |
157 -- 193 |
43 -- 75 |
primosomal replication protein N'' |
|
_____________156___________________________________194\n_____________|_____________________________________|\n5'-GGG...AGAGU______UUUA_____A_____AUCAU_______G___UCUUA...GUU-3'\n______________GGCUAC____GCAUA_CAAUU_____UUUCAUU_AGG\n______________|:||||____:||:|_|||||_____|||||:|_|||\n______________CUGAUG____UGUGU_GUUAA_____AAAGUGA_UCC\n3'-UUU...CGUUU_______________C_____GCAAC_______G___CCUAA...GCA-5'\n_____________|_____________________________________|\n_____________76____________________________________42\n |
183 -- 189 |
47 -- 53 |
-24.815 kcal/mol |
8.75149 kcal/mol |
4.35266 kcal/mol |
156 194@LB@ | |@LB@5'-GGG...AGAGU UUUA A AUCAU G UCUUA...GUU-3'@LB@ GGCUAC GCAUA CAAUU UUUCAUU AGG@LB@ |:|||| :||:| ||||| |||||:| |||@LB@ CUGAUG UGUGU GUUAA AAAGUGA UCC@LB@3'-UUU...CGUUU C GCAAC G CCUAA...GCA-5'@LB@ | |@LB@ 76 42@LB@@LB@@LB@Energy -11.71 kcal/mol@LB@Hybridization Energy -24.815 kcal/mol@LB@Unfolding Energy - mRNA 8.75149 kcal/mol@LB@Unfolding Energy - sRNA 4.35266 kcal/mol@LB@@LB@Position - mRNA 157 -- 193@LB@Position - sRNA 43 -- 75@LB@Position Seed - mRNA 183 -- 189@LB@Position Seed - sRNA 47 -- 53@LB@ |
75 |
0.003119 |
0.1452 |
b0871 |
poxB |
-11.12 |
0.154817 |
181 -- 203 |
32 -- 50 |
pyruvate dehydrogenase thiamine triphosphate-binding FAD-binding |
|
_____________180_____________________204\n_____________|_______________________|\n5'-CCG...UAUCA________AGAU___GAA_____AAACA...GUG-3'\n______________CAUUCAGG____GGA___CCAUG\n______________||:|||||____|||___|||||\n______________GUGAGUCC____CCU___GGUAC\n3'-UUU...ACAAA_______________AAA_____GAAUA...GCA-5'\n_____________|_______________________|\n_____________51______________________31\n |
182 -- 188 |
43 -- 49 |
-21.2585 kcal/mol |
5.84423 kcal/mol |
4.29868 kcal/mol |
180 204@LB@ | |@LB@5'-CCG...UAUCA AGAU GAA AAACA...GUG-3'@LB@ CAUUCAGG GGA CCAUG@LB@ ||:||||| ||| |||||@LB@ GUGAGUCC CCU GGUAC@LB@3'-UUU...ACAAA AAA GAAUA...GCA-5'@LB@ | |@LB@ 51 31@LB@@LB@@LB@Energy -11.12 kcal/mol@LB@Hybridization Energy -21.2585 kcal/mol@LB@Unfolding Energy - mRNA 5.84423 kcal/mol@LB@Unfolding Energy - sRNA 4.29868 kcal/mol@LB@@LB@Position - mRNA 181 -- 203@LB@Position - sRNA 32 -- 50@LB@Position Seed - mRNA 182 -- 188@LB@Position Seed - sRNA 43 -- 49@LB@ |
76 |
0.003141 |
0.1452 |
b0187 |
yaeR |
-8.98 |
0.354982 |
261 -- 292 |
48 -- 78 |
putative lyase |
|
_____________260_______________________________293\n_____________|_________________________________|\n5'-AAA...UGAGC_______UUC___U_____AU__UUG_______GCUGCAAA-3'\n______________AAAG_CU___UAC_GCGAU__UC___GUUUCAC\n______________||||_||___:||_||:||__||___|||||||\n______________UUUC_GA___GUG_CGUUA__AG___CAAAGUG\n3'-UUU...ACCCG____U__UGU___U_________CAA_______AGUCC...GCA-5'\n_____________|_________________________________|\n_____________79________________________________47\n |
286 -- 292 |
48 -- 54 |
-17.4111 kcal/mol |
4.74942 kcal/mol |
3.68736 kcal/mol |
260 293@LB@ | |@LB@5'-AAA...UGAGC UUC U AU UUG GCUGCAAA-3'@LB@ AAAG CU UAC GCGAU UC GUUUCAC@LB@ |||| || :|| ||:|| || |||||||@LB@ UUUC GA GUG CGUUA AG CAAAGUG@LB@3'-UUU...ACCCG U UGU U CAA AGUCC...GCA-5'@LB@ | |@LB@ 79 47@LB@@LB@@LB@Energy -8.98 kcal/mol@LB@Hybridization Energy -17.4111 kcal/mol@LB@Unfolding Energy - mRNA 4.74942 kcal/mol@LB@Unfolding Energy - sRNA 3.68736 kcal/mol@LB@@LB@Position - mRNA 261 -- 292@LB@Position - sRNA 48 -- 78@LB@Position Seed - mRNA 286 -- 292@LB@Position Seed - sRNA 48 -- 54@LB@ |
77 |
0.003184 |
0.1452 |
b4406 |
yaeP |
-9.70 |
0.274250 |
222 -- 254 |
40 -- 71 |
UPF0253 family protein |
|
_____________221________________________________255\n_____________|__________________________________|\n5'-ACC...AGUUA_______A_____A__CG_AAA________C___GACUU...UGC-3'\n______________AUACGCA_GCGGU_CG__G___UCGC_CAG_GGA\n______________|:||:||_||::|_||__|___||:|_|||_|||\n______________UGUGUGU_CGUUA_GC__C___AGUG_GUC_CCU\n3'-UUU...UCUGA_____________A__AA_AA_____A___C___AAAGG...GCA-5'\n_____________|__________________________________|\n_____________72_________________________________39\n |
222 -- 228 |
65 -- 71 |
-25.8836 kcal/mol |
11.435 kcal/mol |
4.74818 kcal/mol |
221 255@LB@ | |@LB@5'-ACC...AGUUA A A CG AAA C GACUU...UGC-3'@LB@ AUACGCA GCGGU CG G UCGC CAG GGA@LB@ |:||:|| ||::| || | ||:| ||| |||@LB@ UGUGUGU CGUUA GC C AGUG GUC CCU@LB@3'-UUU...UCUGA A AA AA A C AAAGG...GCA-5'@LB@ | |@LB@ 72 39@LB@@LB@@LB@Energy -9.70 kcal/mol@LB@Hybridization Energy -25.8836 kcal/mol@LB@Unfolding Energy - mRNA 11.435 kcal/mol@LB@Unfolding Energy - sRNA 4.74818 kcal/mol@LB@@LB@Position - mRNA 222 -- 254@LB@Position - sRNA 40 -- 71@LB@Position Seed - mRNA 222 -- 228@LB@Position Seed - sRNA 65 -- 71@LB@ |
78 |
0.003218 |
0.1452 |
b1641 |
slyB |
-13.21 |
0.056987 |
203 -- 235 |
43 -- 75 |
outer membrane lipoprotein |
|
_____________202_________________________________236\n_____________|___________________________________|\n5'-CCG...UCAAU_____A___________G_________AUGG____UCUGU...AAG-3'\n______________GAUUA_ACGC_GU_AUU_GUUGUUUCA____UAGG\n______________||:||_||:|_|:_|||_|||||||||____:|||\n______________CUGAU_UGUG_CG_UAA_CAACAAAGU____GUCC\n3'-UUU...CGUUU_____G____U__U___G_________GA______CCUAA...GCA-5'\n_____________|___________________________________|\n_____________76__________________________________42\n |
221 -- 227 |
49 -- 55 |
-26.1882 kcal/mol |
8.63028 kcal/mol |
4.35266 kcal/mol |
202 236@LB@ | |@LB@5'-CCG...UCAAU A G AUGG UCUGU...AAG-3'@LB@ GAUUA ACGC GU AUU GUUGUUUCA UAGG@LB@ ||:|| ||:| |: ||| ||||||||| :|||@LB@ CUGAU UGUG CG UAA CAACAAAGU GUCC@LB@3'-UUU...CGUUU G U U G GA CCUAA...GCA-5'@LB@ | |@LB@ 76 42@LB@@LB@@LB@Energy -13.21 kcal/mol@LB@Hybridization Energy -26.1882 kcal/mol@LB@Unfolding Energy - mRNA 8.63028 kcal/mol@LB@Unfolding Energy - sRNA 4.35266 kcal/mol@LB@@LB@Position - mRNA 203 -- 235@LB@Position - sRNA 43 -- 75@LB@Position Seed - mRNA 221 -- 227@LB@Position Seed - sRNA 49 -- 55@LB@ |
79 |
0.00332 |
0.1462 |
b1845 |
ptrB |
-10.90 |
0.169644 |
42 -- 70 |
35 -- 70 |
protease II |
|
_____________41____________________________________71\n_____________|_____________________________________|\n5'-UCU...AGAAU________C_____AA____________CU_______UCUGU...AGC-3'\n______________CGCACAGC_AUUUG__________CAGG__GAUUUUC\n______________|:||||||_|||:|__________||||__|||||:|\n______________GUGUGUCG_UAAGC__________GUCC__CUAAAGG\n3'-UUU...CUGAU________U_____AACAAAGUGA____C________UACGA...GCA-5'\n_____________|_____________________________________|\n_____________71____________________________________34\n |
64 -- 70 |
35 -- 41 |
-24.5069 kcal/mol |
8.82337 kcal/mol |
4.7817 kcal/mol |
41 71@LB@ | |@LB@5'-UCU...AGAAU C AA CU UCUGU...AGC-3'@LB@ CGCACAGC AUUUG CAGG GAUUUUC@LB@ |:|||||| |||:| |||| |||||:|@LB@ GUGUGUCG UAAGC GUCC CUAAAGG@LB@3'-UUU...CUGAU U AACAAAGUGA C UACGA...GCA-5'@LB@ | |@LB@ 71 34@LB@@LB@@LB@Energy -10.90 kcal/mol@LB@Hybridization Energy -24.5069 kcal/mol@LB@Unfolding Energy - mRNA 8.82337 kcal/mol@LB@Unfolding Energy - sRNA 4.7817 kcal/mol@LB@@LB@Position - mRNA 42 -- 70@LB@Position - sRNA 35 -- 70@LB@Position Seed - mRNA 64 -- 70@LB@Position Seed - sRNA 35 -- 41@LB@ |
80 |
0.003376 |
0.1462 |
b3098 |
yqjD |
-10.12 |
0.233597 |
155 -- 204 |
31 -- 75 |
membrane-anchored ribosome-binding protein |
|
_____________154_________________________________________________205\n_____________|___________________________________________________|\n5'-UCA...CGCGC______UA__UCA____A___CACUAC_______CCU__A__AAA______CGAAA...AAG-3'\n______________GACUAC__AC___CAAU__GU______UUACUCA___GG_GA___CUAUGU\n______________||||||__||___||||__||______|:|||||___||_||___|:|||:\n______________CUGAUG__UG___GUUA__CA______AGUGAGU___CC_CU___GGUACG\n3'-UUU...CGUUU______UG__UC_____AG__ACAA_________C_______AAA______AAUAU...GCA-5'\n_____________|___________________________________________________|\n_____________76__________________________________________________30\n |
181 -- 187 |
45 -- 51 |
-24.4421 kcal/mol |
7.05998 kcal/mol |
7.26183 kcal/mol |
154 205@LB@ | |@LB@5'-UCA...CGCGC UA UCA A CACUAC CCU A AAA CGAAA...AAG-3'@LB@ GACUAC AC CAAU GU UUACUCA GG GA CUAUGU@LB@ |||||| || |||| || |:||||| || || |:|||:@LB@ CUGAUG UG GUUA CA AGUGAGU CC CU GGUACG@LB@3'-UUU...CGUUU UG UC AG ACAA C AAA AAUAU...GCA-5'@LB@ | |@LB@ 76 30@LB@@LB@@LB@Energy -10.12 kcal/mol@LB@Hybridization Energy -24.4421 kcal/mol@LB@Unfolding Energy - mRNA 7.05998 kcal/mol@LB@Unfolding Energy - sRNA 7.26183 kcal/mol@LB@@LB@Position - mRNA 155 -- 204@LB@Position - sRNA 31 -- 75@LB@Position Seed - mRNA 181 -- 187@LB@Position Seed - sRNA 45 -- 51@LB@ |