| 1 |
5.015e-10 |
1.765e-06 |
b0680 |
glnS |
-23.71 |
0.000006 |
155 -- 198 |
34 -- 77 |
glutamyl-tRNA synthetase |
|
_____________154___________________________________________199\n_____________|_____________________________________________|\n5'-UGC...CUUAU_____C______C__U__A________A_____U_A___A_____CGAUG...CGC-3'\n______________AAGAU_AUACGC_GU_AU_CGUUGUUU_CGCUU_G_GGA__UCCA\n______________||||:_|:||:|_|:_||_||||||||_|:||:_|_|||__||||\n______________UUCUG_UGUGUG_CG_UA_GCAACAAA_GUGAG_C_CCU__AGGU\n3'-UUU...CCCGU_____A______U__U__A______________U_C___AA____ACGAA...GCA-5'\n_____________|_____________________________________________|\n_____________78____________________________________________33\n |
175 -- 181 |
51 -- 57 |
-34.8912 kcal/mol |
6.37021 kcal/mol |
4.81601 kcal/mol |
154 199@LB@ | |@LB@5'-UGC...CUUAU C C U A A U A A CGAUG...CGC-3'@LB@ AAGAU AUACGC GU AU CGUUGUUU CGCUU G GGA UCCA@LB@ ||||: |:||:| |: || |||||||| |:||: | ||| ||||@LB@ UUCUG UGUGUG CG UA GCAACAAA GUGAG C CCU AGGU@LB@3'-UUU...CCCGU A U U A U C AA ACGAA...GCA-5'@LB@ | |@LB@ 78 33@LB@@LB@@LB@Energy -23.71 kcal/mol@LB@Hybridization Energy -34.8912 kcal/mol@LB@Unfolding Energy - mRNA 6.37021 kcal/mol@LB@Unfolding Energy - sRNA 4.81601 kcal/mol@LB@@LB@Position - mRNA 155 -- 198@LB@Position - sRNA 34 -- 77@LB@Position Seed - mRNA 175 -- 181@LB@Position Seed - sRNA 51 -- 57@LB@ |
| 7 |
1.819e-05 |
0.009142 |
b1849 |
purT |
-22.68 |
0.000026 |
168 -- 199 |
33 -- 74 |
phosphoribosylglycinamide formyltransferase 2 |
|
_____________167________________________________________200\n_____________|__________________________________________|\n5'-UUU...UUUAU________________AA__________________A_____UAUGA...GUC-3'\n______________ACUGCGCGCGG_AAUU___________UCAGGGGAU_UUCGU\n______________|||:|:|:|:|_||||___________|||||||||_|:|:|\n______________UGAUGUGUGUC_UUAA___________AGUCCCCUA_AGGUA\n3'-UUU...GUUUC___________G____GCAACAAAGUG_________A_____CGAAU...GCA-5'\n_____________|__________________________________________|\n_____________75_________________________________________32\n |
187 -- 193 |
39 -- 45 |
-34.2979 kcal/mol |
6.80622 kcal/mol |
4.81602 kcal/mol |
167 200@LB@ | |@LB@5'-UUU...UUUAU AA A UAUGA...GUC-3'@LB@ ACUGCGCGCGG AAUU UCAGGGGAU UUCGU@LB@ |||:|:|:|:| |||| ||||||||| |:|:|@LB@ UGAUGUGUGUC UUAA AGUCCCCUA AGGUA@LB@3'-UUU...GUUUC G GCAACAAAGUG A CGAAU...GCA-5'@LB@ | |@LB@ 75 32@LB@@LB@@LB@Energy -22.68 kcal/mol@LB@Hybridization Energy -34.2979 kcal/mol@LB@Unfolding Energy - mRNA 6.80622 kcal/mol@LB@Unfolding Energy - sRNA 4.81602 kcal/mol@LB@@LB@Position - mRNA 168 -- 199@LB@Position - sRNA 33 -- 74@LB@Position Seed - mRNA 187 -- 193@LB@Position Seed - sRNA 39 -- 45@LB@ |
| 6 |
1.32e-05 |
0.00774 |
b0475 |
hemH |
-21.46 |
0.000115 |
123 -- 162 |
34 -- 75 |
ferrochelatase |
|
_____________122__________________________________________163\n_____________|____________________________________________|\n5'-CGG...GAUUU___CU_U__________A___CUUC________CU_________CUACA...GCG-3'\n______________GAC__C_CACAGCAAUU_GUU____UUC_CUCA_____UUUCCG\n______________|||__|_||||||||||_|||____|||_||||_____|||||:\n______________CUG__G_GUGUCGUUAA_CAA____AAG_GAGU_____AAAGGU\n3'-UUU...CGUUU___AU_U__________G___CA_____U____CCCCU______ACGAA...GCA-5'\n_____________|____________________________________________|\n_____________76___________________________________________33\n |
133 -- 139 |
59 -- 65 |
-29.8744 kcal/mol |
3.60304 kcal/mol |
4.816 kcal/mol |
122 163@LB@ | |@LB@5'-CGG...GAUUU CU U A CUUC CU CUACA...GCG-3'@LB@ GAC C CACAGCAAUU GUU UUC CUCA UUUCCG@LB@ ||| | |||||||||| ||| ||| |||| |||||:@LB@ CUG G GUGUCGUUAA CAA AAG GAGU AAAGGU@LB@3'-UUU...CGUUU AU U G CA U CCCCU ACGAA...GCA-5'@LB@ | |@LB@ 76 33@LB@@LB@@LB@Energy -21.46 kcal/mol@LB@Hybridization Energy -29.8744 kcal/mol@LB@Unfolding Energy - mRNA 3.60304 kcal/mol@LB@Unfolding Energy - sRNA 4.816 kcal/mol@LB@@LB@Position - mRNA 123 -- 162@LB@Position - sRNA 34 -- 75@LB@Position Seed - mRNA 133 -- 139@LB@Position Seed - sRNA 59 -- 65@LB@ |
| 154 |
0.007512 |
0.1668 |
b2180 |
yejF |
-18.70 |
0.001576 |
262 -- 293 |
44 -- 72 |
microcin C ABC transporter ATPase |
|
_____________261______________________________294\n_____________|________________________________|\n5'-GAC...AACCG_____________CAA__A_________A___AUUGAGG-3'\n______________UACGUACAGUAGU___UG_UGUUUCACU_CAG\n______________|||::||||:|:|___:|_|||||||||_|||\n______________AUGUGUGUCGUUA___GC_ACAAAGUGA_GUC\n3'-UUU...UUCUG_____________A____A_____________CCCUA...GCA-5'\n_____________|________________________________|\n_____________73_______________________________43\n |
283 -- 289 |
47 -- 53 |
-27.8629 kcal/mol |
5.03502 kcal/mol |
4.12429 kcal/mol |
261 294@LB@ | |@LB@5'-GAC...AACCG CAA A A AUUGAGG-3'@LB@ UACGUACAGUAGU UG UGUUUCACU CAG@LB@ |||::||||:|:| :| ||||||||| |||@LB@ AUGUGUGUCGUUA GC ACAAAGUGA GUC@LB@3'-UUU...UUCUG A A CCCUA...GCA-5'@LB@ | |@LB@ 73 43@LB@@LB@@LB@Energy -18.70 kcal/mol@LB@Hybridization Energy -27.8629 kcal/mol@LB@Unfolding Energy - mRNA 5.03502 kcal/mol@LB@Unfolding Energy - sRNA 4.12429 kcal/mol@LB@@LB@Position - mRNA 262 -- 293@LB@Position - sRNA 44 -- 72@LB@Position Seed - mRNA 283 -- 289@LB@Position Seed - sRNA 47 -- 53@LB@ |
| 19 |
0.0001526 |
0.02826 |
b1040 |
csgD |
-18.47 |
0.001904 |
103 -- 117 |
60 -- 74 |
csgBAC operon transcriptional regulator |
b3520 |
_____________102_____________118\n_____________|_______________|\n5'-UUA...UUAUU_______________GCAAC...CGC-3'\n______________ACUACACACAGCAGU\n______________|||||||||||||:|\n______________UGAUGUGUGUCGUUA\n3'-UUU...GUUUC_______________AGCAA...GCA-5'\n_____________|_______________|\n_____________75______________59\n |
111 -- 117 |
60 -- 66 |
-23.4761 kcal/mol |
1.72592 kcal/mol |
3.27997 kcal/mol |
102 118@LB@ | |@LB@5'-UUA...UUAUU GCAAC...CGC-3'@LB@ ACUACACACAGCAGU@LB@ |||||||||||||:|@LB@ UGAUGUGUGUCGUUA@LB@3'-UUU...GUUUC AGCAA...GCA-5'@LB@ | |@LB@ 75 59@LB@@LB@@LB@Energy -18.47 kcal/mol@LB@Hybridization Energy -23.4761 kcal/mol@LB@Unfolding Energy - mRNA 1.72592 kcal/mol@LB@Unfolding Energy - sRNA 3.27997 kcal/mol@LB@@LB@Position - mRNA 103 -- 117@LB@Position - sRNA 60 -- 74@LB@Position Seed - mRNA 111 -- 117@LB@Position Seed - sRNA 60 -- 66@LB@ |
| 47 |
0.001402 |
0.105 |
b2297 |
pta |
-18.38 |
0.002042 |
9 -- 40 |
45 -- 75 |
phosphate acetyltransferase |
|
_____________8__________________________________41\n_____________|__________________________________|\n___5'-CGCAACCU_________UUU______A__UG___________ACAAA...GUC-3'\n______________GGCUGCACG___CGGCAA_UC___GUUUCA_UCA\n______________|:||:|||:___|:||||_||___||||||_|||\n______________CUGAUGUGU___GUCGUU_AG___CAAAGU_AGU\n3'-UUU...CGUUU__________________A__CAA______G___CCCCU...GCA-5'\n_____________|__________________________________|\n_____________76_________________________________44\n |
11 -- 17 |
67 -- 73 |
-26.9548 kcal/mol |
4.83173 kcal/mol |
3.74078 kcal/mol |
8 41@LB@ | |@LB@ 5'-CGCAACCU UUU A UG ACAAA...GUC-3'@LB@ GGCUGCACG CGGCAA UC GUUUCA UCA@LB@ |:||:|||: |:|||| || |||||| |||@LB@ CUGAUGUGU GUCGUU AG CAAAGU AGU@LB@3'-UUU...CGUUU A CAA G CCCCU...GCA-5'@LB@ | |@LB@ 76 44@LB@@LB@@LB@Energy -18.38 kcal/mol@LB@Hybridization Energy -26.9548 kcal/mol@LB@Unfolding Energy - mRNA 4.83173 kcal/mol@LB@Unfolding Energy - sRNA 3.74078 kcal/mol@LB@@LB@Position - mRNA 9 -- 40@LB@Position - sRNA 45 -- 75@LB@Position Seed - mRNA 11 -- 17@LB@Position Seed - sRNA 67 -- 73@LB@ |
| 24 |
0.0002076 |
0.02926 |
b3459 |
panM |
-18.00 |
0.002751 |
9 -- 48 |
38 -- 75 |
PanD autocleavage accelerator panothenate synthesis |
|
_____________8___________________________________________49\n_____________|___________________________________________|\n___5'-AAAAUAAC_______A_G___GGAAU_____ACUA________________AUGCU...UUG-3'\n______________GGC_ACA_A_GGC_____AAUUC______UCAUUCAGGGGAUU\n______________|:|_|||_|_:||_____|||||______|||:||||||||||\n______________CUG_UGU_U_UCG_____UUAAG______AGUGAGUCCCCUAA\n3'-UUU...CGUUU___A___G_G_____________CAACAA______________AGGUA...GCA-5'\n_____________|___________________________________________|\n_____________76__________________________________________37\n |
42 -- 48 |
38 -- 44 |
-31.5918 kcal/mol |
8.81239 kcal/mol |
4.77946 kcal/mol |
8 49@LB@ | |@LB@ 5'-AAAAUAAC A G GGAAU ACUA AUGCU...UUG-3'@LB@ GGC ACA A GGC AAUUC UCAUUCAGGGGAUU@LB@ |:| ||| | :|| ||||| |||:||||||||||@LB@ CUG UGU U UCG UUAAG AGUGAGUCCCCUAA@LB@3'-UUU...CGUUU A G G CAACAA AGGUA...GCA-5'@LB@ | |@LB@ 76 37@LB@@LB@@LB@Energy -18.00 kcal/mol@LB@Hybridization Energy -31.5918 kcal/mol@LB@Unfolding Energy - mRNA 8.81239 kcal/mol@LB@Unfolding Energy - sRNA 4.77946 kcal/mol@LB@@LB@Position - mRNA 9 -- 48@LB@Position - sRNA 38 -- 75@LB@Position Seed - mRNA 42 -- 48@LB@Position Seed - sRNA 38 -- 44@LB@ |
| 32 |
0.0005139 |
0.05552 |
b4070 |
nrfA |
-17.83 |
0.003136 |
66 -- 107 |
41 -- 78 |
nitrite reductase formate-dependent cytochrome |
|
_____________65_________________________________________108\n_____________|__________________________________________|\n5'-UGU...UGAUU______A___UU_______UG___AU_____A___A______CGAGC...CAA-3'\n______________AAAGAC_ACA__CACAGUG__GUU__UUGUU_CAC_UAGGGG\n______________||||||_|||__|||||::__:||__|||||_|||_:|||||\n______________UUUCUG_UGU__GUGUCGU__UAA__AACAA_GUG_GUCCCC\n3'-UUU...ACCCG______A_________________GC_____A___A______UAAAG...GCA-5'\n_____________|__________________________________________|\n_____________79_________________________________________40\n |
78 -- 84 |
62 -- 68 |
-32.7887 kcal/mol |
10.1881 kcal/mol |
4.77302 kcal/mol |
65 108@LB@ | |@LB@5'-UGU...UGAUU A UU UG AU A A CGAGC...CAA-3'@LB@ AAAGAC ACA CACAGUG GUU UUGUU CAC UAGGGG@LB@ |||||| ||| |||||:: :|| ||||| ||| :|||||@LB@ UUUCUG UGU GUGUCGU UAA AACAA GUG GUCCCC@LB@3'-UUU...ACCCG A GC A A UAAAG...GCA-5'@LB@ | |@LB@ 79 40@LB@@LB@@LB@Energy -17.83 kcal/mol@LB@Hybridization Energy -32.7887 kcal/mol@LB@Unfolding Energy - mRNA 10.1881 kcal/mol@LB@Unfolding Energy - sRNA 4.77302 kcal/mol@LB@@LB@Position - mRNA 66 -- 107@LB@Position - sRNA 41 -- 78@LB@Position Seed - mRNA 78 -- 84@LB@Position Seed - sRNA 62 -- 68@LB@ |
| 159 |
0.007688 |
0.1668 |
b0454 |
ybaZ |
-17.74 |
0.003345 |
226 -- 245 |
34 -- 52 |
excision repair protein alkyltransferase-like protein ATL |
|
_____________225__________________246\n_____________|____________________|\n5'-AGG...GCGAC__________C_UU______GAUUA...UUC-3'\n______________UUCACUCGGG_G__UUUCCA\n______________|||||||:||_|__||||||\n______________AAGUGAGUCC_C__AAAGGU\n3'-UUU...CAACA____________CU______ACGAA...GCA-5'\n_____________|____________________|\n_____________53___________________33\n |
229 -- 235 |
43 -- 49 |
-23.7092 kcal/mol |
4.0826 kcal/mol |
1.88482 kcal/mol |
225 246@LB@ | |@LB@5'-AGG...GCGAC C UU GAUUA...UUC-3'@LB@ UUCACUCGGG G UUUCCA@LB@ |||||||:|| | ||||||@LB@ AAGUGAGUCC C AAAGGU@LB@3'-UUU...CAACA CU ACGAA...GCA-5'@LB@ | |@LB@ 53 33@LB@@LB@@LB@Energy -17.74 kcal/mol@LB@Hybridization Energy -23.7092 kcal/mol@LB@Unfolding Energy - mRNA 4.0826 kcal/mol@LB@Unfolding Energy - sRNA 1.88482 kcal/mol@LB@@LB@Position - mRNA 226 -- 245@LB@Position - sRNA 34 -- 52@LB@Position Seed - mRNA 229 -- 235@LB@Position Seed - sRNA 43 -- 49@LB@ |
| 127 |
0.005686 |
0.1575 |
b1176 |
minC |
-17.54 |
0.003902 |
3 -- 40 |
35 -- 74 |
inhibitor of FtsZ ring polymerization |
|
_____________2________________________________________41\n_____________|________________________________________|\n_________5'-AA_G_____________GG____A__G__A_____U______UAAGC...AAG-3'\n______________A_UACG_ACGGCAAU__GUUG_UU_AC__AGGG_AUUUUU\n______________|_|||:_||:|||||__||||_||_||__||||_||||::\n______________U_AUGU_UGUCGUUA__CAAC_AA_UG__UCCC_UAAAGG\n3'-UUU...GUUUC_G____G________AG____A__G__AG____C______UACGA...GCA-5'\n_____________|________________________________________|\n_____________75_______________________________________34\n |
10 -- 16 |
60 -- 66 |
-29.7113 kcal/mol |
7.37167 kcal/mol |
4.80541 kcal/mol |
2 41@LB@ | |@LB@ 5'-AA G GG A G A U UAAGC...AAG-3'@LB@ A UACG ACGGCAAU GUUG UU AC AGGG AUUUUU@LB@ | |||: ||:||||| |||| || || |||| ||||::@LB@ U AUGU UGUCGUUA CAAC AA UG UCCC UAAAGG@LB@3'-UUU...GUUUC G G AG A G AG C UACGA...GCA-5'@LB@ | |@LB@ 75 34@LB@@LB@@LB@Energy -17.54 kcal/mol@LB@Hybridization Energy -29.7113 kcal/mol@LB@Unfolding Energy - mRNA 7.37167 kcal/mol@LB@Unfolding Energy - sRNA 4.80541 kcal/mol@LB@@LB@Position - mRNA 3 -- 40@LB@Position - sRNA 35 -- 74@LB@Position Seed - mRNA 10 -- 16@LB@Position Seed - sRNA 60 -- 66@LB@ |
